BAC Information

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BAC

Clone NameB6Ng01-129A17
Chromosome19 (Build37)
Map Location 58,529,221 - 58,571,248
singlet/doubletdoublet
Overlap geneLOC100043503
Upstream geneTrub1, LOC100043038, Atrnl1, Gfra1
Downstream gene1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129A17.bB6Ng01-129A17.g
ACCDH930734DH930735
length1,1471,070
definitionDH930734|Mus musculus domesticus DNA, BAC clone: B6Ng01-129A17, 5' end.DH930735|Mus musculus domesticus DNA, BAC clone: B6Ng01-129A17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,570,084 - 58,571,248)(58,529,221 - 58,530,313)
sequence
gaattccaggctggtaaaagaaattgtgtccaaaaaaaagtgagcttacc
agacagttagtacctgaggttgtcttatgttcatattcattgtataatga
aaaaaaaaaacaatagtcttttatgtatcattggttctcttcccttctat
tcataattgacaactgcctgacttatcaaagggtgcatgaaattcatatg
accaccacaccataacctttctcttttcctgctaaaaatacatgaaacta
ccttctcaacatagatgtgtatgatgcagcactgttaactccagttcagg
agctgtgagtcagaacttatgtgtcctgggtgactgtattctctgaccac
actcttcacccctacattgccagtctactctctgttccctggctgctttg
gggtatgcacataaacagtaatgatgcatataatctgtcaggattattcc
actcgtttcctcgggttcctgtatattgacacaaatggtagctctttttt
ttttctcaccattaactggggctcatagatggagctaggactgctggcta
gtaagccctagtgatcctcctgcctctgcctccccgtgctaagatttatc
atgtgccaccatgccccagtgggtttatgtggttctggcagttgaacttg
gctccctgtgcttgtgtgcttcatcaacagagccagcaccccagccccta
tttgtgtatcttgattcctgtgaataatgtttcaatgaacacattgaaaa
ttgatgcagcctttacagaaagcaatatggccatccttcaagtaatttaa
aatgtaactacattttcagccacttctggaatatcccctcaagcagatga
cctcatttcttgttctttttaaacatgtgatcctgccctttggcttggaa
accccccccctctgttatctttcttttgcacttaggactcaactctggga
ttctatgtctgtgttagaatagcctccctatcacagagactccttgcttt
ccacatcttttaggtatagagctggtgttaagacttcattctacaagatt
tcagcacatcactgaagaacattatctttcaacagtggtgagatgacaaa
atattaagaagactgcacttattcgagaccttacatcaagcacgaat
gaattcatctattacgggcacgaggaagctccggaacccgggttctggag
ctggtaaggtccgctagggctcccaacgttcaaagctggaggatatcgcg
cacaacccaagaggctgaacgcaagcaaataaataaccattactttcaga
gcaagcgccggaagctagctggcgctgcccggagtcggagcctcggtggc
gaaggcttcttagccaaccccgctggaccaagaccctgctccggctccgg
gaagttggccgccctccctggctctcgcccgaccactcacttgctggctc
gatcactagcgttctagctcttctgtccccggccaccgatcgctacccca
gtcaccgtcatcccctcccctggacgagcctctcttcccaggcagtccgg
caagaggaaactgacatcccgcatcccgcctggtactgaaacctggcttc
tccgcccctactcctacctgccgctcatcctgggctccttcctagacttc
agtgcttcacacgcacttgcctagcgcccgaactcctgtgcatccacacc
actgccccgtgagagcgagctagtccacagcatctgcacaccccagcagg
tgcagccccgcaccactagcgcccccctggccccaaagttggaggacgcc
agcaaaatggaaagggatggctggaggggaggtggcgatgggttctcaag
tggaatgagaaaactctaaatgccacgaacctgaacccaattgaccggtg
tccagctgcagcgagtagccagtgtttgtttatttattctttggggtgtc
cccgcctcctctttctctttccggcctcactttctctgtgctaggtaaaa
aaacgatgccacaatctgctacagctcggaggacagagttggccaggacg
attttcgagcagacctctccgcccggctcgatgcccggtaggatgtcagc
ggtattgagcgtgggagatagcatgccagatgtttgctaaagccctcagg
ctgctctgctctgctcggcagcgcaggcggtctttctgtgaagcgcagtt
ctcgttcgccacagcagact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_58570084_58571248
seq2: B6Ng01-129A17.b_48_1194 (reverse)

seq1  ATTCGCTGCTTGAATTGTAATGTCTCAAAATAAGTGCAGTCTCTCTAAAA  50
      ||||| |||||||  ||||| |||||  |||||||||||||| |||  ||
seq2  ATTCG-TGCTTGA--TGTAAGGTCTC-GAATAAGTGCAGTCT-TCT-TAA  44

seq1  TATTTTGTCATCTCA-CACTGTTTGAAAGATAAATGGTCTTCAGTGGAAT  99
      ||||||||||||||| ||||| ||||||||| |||| |||||||||  ||
seq2  TATTTTGTCATCTCACCACTG-TTGAAAGAT-AATGTTCTTCAGTG--AT  90

seq1  GGTTGCTGAAATTCTTTGTTAGAATGGAAGTCTTAACACCAGCTTCTATA  149
      |  |||||||| ||||   |||||| ||||||||||||||||| ||||||
seq2  G--TGCTGAAA-TCTT--GTAGAAT-GAAGTCTTAACACCAGC-TCTATA  133

seq1  CCTAAAAGATGTGGATAGCAAGGAGTTCTCTGTGATAGGGAGGCTATTCT  199
      ||||||||||||||| ||||||||| ||||||||||||||||||||||||
seq2  CCTAAAAGATGTGGAAAGCAAGGAG-TCTCTGTGATAGGGAGGCTATTCT  182

seq1  AACACAGACATAGAATCCCAGAGTTGAGTCCTAAGTGCAAAAGAAAGATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGACATAGAATCCCAGAGTTGAGTCCTAAGTGCAAAAGAAAGATA  232

seq1  ACAGAGGGGGGGGGGTTTCCAAGCCAAAGGGCAGGATCACATGTTTAAAA  299
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGA-GGGGGGGGGTTTCCAAGCCAAAGGGCAGGATCACATGTTTAAAA  281

seq1  AGAACAAGGAATGAGGTCATCTGCTTGAGGGGATATTCCAGAAGTGGCTG  349
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAGAAATGAGGTCATCTGCTTGAGGGGATATTCCAGAAGTGGCTG  331

seq1  AAAATGTAGTTACATTTTAAATTACTTGAAGGATGGCCATATTGCTTTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTAGTTACATTTTAAATTACTTGAAGGATGGCCATATTGCTTTCT  381

seq1  GTAAAGGCTGCATCAATTTTCAATGTGTTCATTGAAACATTATTCACAGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGGCTGCATCAATTTTCAATGTGTTCATTGAAACATTATTCACAGG  431

seq1  AATCAAGATACACAAATAGGGGCTGGGGTGCTGGCTCTGTTGATGAAGCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGATACACAAATAGGGGCTGGGGTGCTGGCTCTGTTGATGAAGCA  481

seq1  CACAAGCACAGGGAGCCAAGTTCAACTGCCAGAACCACATAAACCCACTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCACAGGGAGCCAAGTTCAACTGCCAGAACCACATAAACCCACTG  531

seq1  GGGCATGGTGGCACATGATAAATCTTAGCACGGGGAGGCAGAGGCAGGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATGGTGGCACATGATAAATCTTAGCACGGGGAGGCAGAGGCAGGAG  581

seq1  GATCACTAGGGCTTACTAGCCAGCAGTCCTAGCTCCATCTATGAGCCCCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACTAGGGCTTACTAGCCAGCAGTCCTAGCTCCATCTATGAGCCCCA  631

seq1  GTTAATGGTGAGAAAAAAAAAAGAGCTACCATTTGTGTCAATATACAGGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGGTGAGAAAAAAAAAAGAGCTACCATTTGTGTCAATATACAGGA  681

seq1  ACCCGAGGAAACGAGTGGAATAATCCTGACAGATTATATGCATCATTACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGAGGAAACGAGTGGAATAATCCTGACAGATTATATGCATCATTACT  731

seq1  GTTTATGTGCATACCCCAAAGCAGCCAGGGAACAGAGAGTAGACTGGCAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGTGCATACCCCAAAGCAGCCAGGGAACAGAGAGTAGACTGGCAA  781

seq1  TGTAGGGGTGAAGAGTGTGGTCAGAGAATACAGTCACCCAGGACACATAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGGGTGAAGAGTGTGGTCAGAGAATACAGTCACCCAGGACACATAA  831

seq1  GTTCTGACTCACAGCTCCTGAACTGGAGTTAACAGTGCTGCATCATACAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGACTCACAGCTCCTGAACTGGAGTTAACAGTGCTGCATCATACAC  881

seq1  ATCTATGTTGAGAAGGTAGTTTCATGTATTTTTAGCAGGAAAAGAGAAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATGTTGAGAAGGTAGTTTCATGTATTTTTAGCAGGAAAAGAGAAAG  931

seq1  GTTATGGTGTGGTGGTCATATGAATTTCATGCACCCTTTGATAAGTCAGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGGTGTGGTGGTCATATGAATTTCATGCACCCTTTGATAAGTCAGG  981

seq1  CAGTTGTCAATTATGAATAGAAGGGAAGAGAACCAATGATACATAAAAGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGTCAATTATGAATAGAAGGGAAGAGAACCAATGATACATAAAAGA  1031

seq1  CTATTGTTTTTTTTTTTCATTATACAATGAATATGAACATAAGACAACCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGTTTTTTTTTTTCATTATACAATGAATATGAACATAAGACAACCT  1081

seq1  CAGGTACTAACTGTCTGGTAAGCTCACTTTTTTTTGGACACAATTTCTTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTACTAACTGTCTGGTAAGCTCACTTTTTTTTGGACACAATTTCTTT  1131

seq1  TACCAGCCTGGAATTC  1165
      ||||||||||||||||
seq2  TACCAGCCTGGAATTC  1147

seq1: chr19_58529221_58530313
seq2: B6Ng01-129A17.g_67_1136

seq1  GAATTCATCTATTACGGGCACGAGGAAGCTCCGGAACCCGGGTTCTGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTATTACGGGCACGAGGAAGCTCCGGAACCCGGGTTCTGGAG  50

seq1  CTGGTAAGGTCCGCTAGGGCTCCCAACGTTCAAAGCTGGAGGATATCGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAAGGTCCGCTAGGGCTCCCAACGTTCAAAGCTGGAGGATATCGCG  100

seq1  CACAACCCAAGAGGCTGAACGCAAGCAAATAAATAACCATTACTTTCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCCAAGAGGCTGAACGCAAGCAAATAAATAACCATTACTTTCAGA  150

seq1  GCAAGCGCCGGAAGCTAGCTGGCGCTGCCCGGAGTCGGAGCCTCGGTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCGCCGGAAGCTAGCTGGCGCTGCCCGGAGTCGGAGCCTCGGTGGC  200

seq1  GAAGGCTTCTTAGCCAACCCCGCTGGACCAAGACCCTGCTCCGGCTCCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTTCTTAGCCAACCCCGCTGGACCAAGACCCTGCTCCGGCTCCGG  250

seq1  GAAGTTGGCCGCCCTCCCTGGCTCTCGCCCGACCACTCACTTGCTGGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGGCCGCCCTCCCTGGCTCTCGCCCGACCACTCACTTGCTGGCTC  300

seq1  GATCACTAGCGTTCTAGCTCTTCTGTCCCCGGCCACCGATCGCTACCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACTAGCGTTCTAGCTCTTCTGTCCCCGGCCACCGATCGCTACCCCA  350

seq1  GTCACCGTCATCCCCTCCCCTGGACGAGCCTCTCTTCCCAGGCAGTCCGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCGTCATCCCCTCCCCTGGACGAGCCTCTCTTCCCAGGCAGTCCGG  400

seq1  CAAGAGGAAACTGACATCCCGCATCCCGCCTGGTACTGAAACCTGGCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGGAAACTGACATCCCGCATCCCGCCTGGTACTGAAACCTGGCTTC  450

seq1  TCCGCCCCTACTCCTACCTGCCGCTCATCCTGGGCTCCTTCCTAGACTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCCCCTACTCCTACCTGCCGCTCATCCTGGGCTCCTTCCTAGACTTC  500

seq1  AGTGCTTCACACGCACTTGCCTAGCGCCCGAACTCCTGTGCATCCACACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTCACACGCACTTGCCTAGCGCCCGAACTCCTGTGCATCCACACC  550

seq1  ACTGCCCCGTGAGAGCGAGCTAGTCCACAGCATCTGCACACCCCAGCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCCCGTGAGAGCGAGCTAGTCCACAGCATCTGCACACCCCAGCAGG  600

seq1  TGCAGCCCCGCACCACTAGCGCCCCCCTGGCCCCAAAGTTGGAGGACGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCCCGCACCACTAGCGCCCCCCTGGCCCCAAAGTTGGAGGACGCC  650

seq1  AGCAAAATGGAAAGGGATGGCTGGAGGGGAGGTGGCGATGGGTTCTCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAATGGAAAGGGATGGCTGGAGGGGAGGTGGCGATGGGTTCTCAAG  700

seq1  TGGAATGAGAAAACTCTAAATGCCACGAACCTGAACCCAATTGACCGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGAGAAAACTCTAAATGCCACGAACCTGAACCCAATTGACCGGTG  750

seq1  TCCAGCTGCAGCGAGTAGCCAGTGTTTGTTTATTTATTCTTTGGGGTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTGCAGCGAGTAGCCAGTGTTTGTTTATTTATTCTTTGGGGTGTC  800

seq1  CCCGCCTCCTCTTTCTCTTTCCGGCCTCACTTTCTCTGTGCTAGGTAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCCTCCTCTTTCTCTTTCCGGCCTCACTTTCTCTGTGCTAGGTAAAA  850

seq1  AAACGATGCCACAATCTGCTACAGCTCGGAGGACAGAGTTGGCCAGGACG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGATGCCACAATCTGCTACAGCTCGGAGGACAGAGTTGGCCAGGACG  900

seq1  ATTTCCGAGCAGACCTCCCCGCCCCGGCTCGATGCCCGGTAGGGATGTCA  950
      |||| |||||||||||| ||| ||||||||||||||||||| ||||||||
seq2  ATTTTCGAGCAGACCTCTCCG-CCCGGCTCGATGCCCGGTA-GGATGTCA  948

seq1  GCGGTTATTGGAAGCGGTGGGAGGATAGCATGCCCAGATTGGTTTTGGCT  1000
      |||| |||||  ||| |||||| ||||||||| ||||||  ||||  |||
seq2  GCGG-TATTG--AGC-GTGGGA-GATAGCATG-CCAGAT--GTTT--GCT  988

seq1  AAAGGCCCCTCAGGCTGCTTCTGCTCCTGCCTCCGGGCAGCGCAGGGCCG  1050
      ||||  |||||||||||| |||||| ||| |||  |||||||||||  ||
seq2  AAAG--CCCTCAGGCTGC-TCTGCT-CTG-CTC--GGCAGCGCAGG--CG  1029

seq1  GCTCTTCTGTGAAGCGCAGTTCCTCCGTCCGCCACAGCAGACT  1093
      |   ||||||||||||||||||   ||| ||||||||||||||
seq2  GTCTTTCTGTGAAGCGCAGTTC--TCGTTCGCCACAGCAGACT  1070