BAC Information

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BAC

Clone NameB6Ng01-131M07
Chromosome19 (Build37)
Map Location 45,483,075 - 45,612,315
singlet/doubletdoublet
Overlap geneBtrc, EG627889
Upstream geneWnt8b, Sec31b, Ndufb8, Hif1an, Pax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1
Downstream genePoll, 5330431N19Rik, Fbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu, Trim8, Arl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131M07.bB6Ng01-131M07.g
ACCDH932742DH932743
length1,2031,001
definitionDH932742|Mus musculus domesticus DNA, BAC clone: B6Ng01-131M07, 5' end.DH932743|Mus musculus domesticus DNA, BAC clone: B6Ng01-131M07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,611,087 - 45,612,315)(45,483,075 - 45,484,081)
sequence
gaattccagccaaccaggtgggaatcttgagggtagctgtgctgtgtctg
gggagagtgtgttggggtggagacatcagtatgaagaaggcaatgcctgg
ccaattggaccaaggagacatctggtggccagtaagggacctgcagcctt
tttacaggagcaccaggtggaggtatcaggtctccctaaccctttgggga
ctcctggggatccaagagaacatcagaccttgagtctactccagggctgg
gactcagaggacagacaatcggtctctggtcctcttctcatcctccaagt
aggaggagagtggacctggacagggatgatggttacaggaggccctgctc
caccatccttggtggacaatgaaccatcatcaccccaatgaaagcaagtg
catcctgggaatgggtgagtggcagagaaagcacttcacgccgctgctcc
tataagctctcccttggagctggggagccaaactgactgcagagctcctg
ggacacccagatagagaccaaggctggaactgggggtacagtcaaggact
aaggtctggattggagtatcaaggttggtcagaagatcttgaggctaggg
tcccagggataagggtccttgtcatcagaagaggggagtaagatcattac
caaacccaaccgtgagcccctgcagataccagaagccacaggaagcccca
agggctgtctagaatttctgggcacatatttttttttaaagatttattta
ttattatacacaagtacactatagctgacttcagacgtaccagaagacag
tgtcagatcccattacagatggctgtgagccaccatgtggtttgctggga
tttgaactcaggaccttcggaagagcagtcagtgctcttacccattgagc
catcttgccagcccctgggtacacattctaaaggtatctgggctctgcca
aggccaaagggggtgtatacaggggccaggctagagactagttctgttca
ctatgaagtacagcagctctgctgggccatgttgcctttgctcctggccc
agacttctggaacccgccagggggtgttgtagggactgggagtctcctga
ggcggacttctttactgagtagccacatgttaccagagtgagagaaagag
tgattctggaagcctggctccttgctctctcatggcatagcacctggcct
gtc
gaattccactgtcatagagaaatcctcgcggtttttgcccatttaaacat
tgggttacttggcttttgtcgttattgttgttgagctatagaagtcctca
agcttctggattcaggtgatcctcctgcctcagcttccagagtgcttctc
ctaagaagcccatcttacgtttactcctcctctttctcttcttctcctcc
tcttctactttttctctccttcttctcctcctgttgctgtcacactgggg
attggactcagtgcttcctatatacaaggcaagctttacattttgctaca
tttattttgcacaaaagttatttgtgtatgtgccatatgaaggtgtgtac
atgtgtgtagagtctagaggtcaccttcaggtagcatttctcaagagccc
ttaattctttgaggcaagatctctcattggttagccaggagcacaccata
ggctggctgctccacctttccagccctggtgtttgtaaacacaccatcat
gtttggcttgttacaaggattctgagagtcaagctcagggcttcacattt
acacaagcactttactgagagttactacagcgcacccagaagtattttct
gaagcctttccccccatgttttttctgtgactaattatacacacacacac
acacacacacacacacacacacacgtcatattacttcatagtttaaaagc
cctgaggttttgttggtttttctttttttaatgacttccttaatttattt
ttattttttgtacattggtgtttcgccttcatcatgtgtgtttgtgtgag
agccggatggacagaactggagttatacacagttgtgagctgctgtgtag
ttgctgggaattgaaccctagtcctctggaaaggctgccagtgctcttaa
ctcaaagctatttttctgcctgttattttctagtcttcacctcttgcttg
tcatttttggaatgcttgcctgccttctcccgcctctccttcccctctcc
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_45611087_45612315
seq2: B6Ng01-131M07.b_47_1249 (reverse)

seq1  GACAGGTAGCCAGGGTGTGCTATGCCAAAAGGAAGAAGCAGGAGAAGCCA  50
      |||||   |||||   |||||||||||  ||  || ||||  || |||||
seq2  GACAG---GCCAG---GTGCTATGCCATGAG--AG-AGCA--AGGAGCCA  39

seq1  GGCTTCTCAG-AGAACTCCATCTCTCCTCCACTCTGGTAGCCAGTCGCCT  99
      |||||| ||| |  ||||  |||||    |||||||||| |  || ||  
seq2  GGCTTC-CAGAATCACTCTTTCTCT----CACTCTGGTAACATGTGGC--  82

seq1  AACTCAGGTAATGAAAAGTCTGCCTTCAAGGAGACTCCCAGTCCCTACCA  149
       ||||| ||||  | ||||| ||||   |||||||||||||||||||| |
seq2  TACTCA-GTAA--AGAAGTCCGCCT--CAGGAGACTCCCAGTCCCTACAA  127

seq1  CACACCTTGCTGTGGTCTCAGAAGTCTGGGCCA-GAGCAAAGGCCAACAT  198
      ||| || ||  | |||  ||||||||||||||| ||||||||| ||||||
seq2  CACCCCCTGGCG-GGTTCCAGAAGTCTGGGCCAGGAGCAAAGG-CAACAT  175

seq1  GGCCCAGCAGAGCCTTGCTGTACTTTCTAGTGAACAGACTTAGTCTCCTA  248
      |||||||||||||  ||||||||||  |||||||||||  |||||| |||
seq2  GGCCCAGCAGAGC--TGCTGTACTTCATAGTGAACAGAACTAGTCT-CTA  222

seq1  GCCTGGCCCCTGTATACACCCCCTTTGGCCTTGGCAAGAGCCCAGATACC  298
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GCCTGGCCCCTGTATACACCCCCTTTGGCCTTGGC-AGAGCCCAGATACC  271

seq1  CTTAGAATGTGTACCCAGGGGCTGGCAAGATGGCTCAATGGGTAAGAGCA  348
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAATGTGTACCCAGGGGCTGGCAAGATGGCTCAATGGGTAAGAGCA  321

seq1  CTGACTGCTCTTCCGAAGGTCCTGAGTTCAAATCCCAGC-AACCACATGG  397
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTGACTGCTCTTCCGAAGGTCCTGAGTTCAAATCCCAGCAAACCACATGG  371

seq1  TGGCTCACAGCCATCTGTAATGGGATCTGACACTGTCTTCTGGTACGTCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCACAGCCATCTGTAATGGGATCTGACACTGTCTTCTGGTACGTCT  421

seq1  GAAGTCAGCTATAGTGTACTTGTGTATAATAATAAATAAATCTTTAAAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCAGCTATAGTGTACTTGTGTATAATAATAAATAAATCTTTAAAAA  471

seq1  AAAATATGTGCCCAGAAATTCTAGACAGCCCTTGGGGCTTCCTGTGGCTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGTGCCCAGAAATTCTAGACAGCCCTTGGGGCTTCCTGTGGCTT  521

seq1  CTGGTATCTGCAGGGGCTCACGGTTGGGTTTGGTAATGATCTTACTCCCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTATCTGCAGGGGCTCACGGTTGGGTTTGGTAATGATCTTACTCCCC  571

seq1  TCTTCTGATGACAAGGACCCTTATCCCTGGGACCCTAGCCTCAAGATCTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGATGACAAGGACCCTTATCCCTGGGACCCTAGCCTCAAGATCTT  621

seq1  CTGACCAACCTTGATACTCCAATCCAGACCTTAGTCCTTGACTGTACCCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCAACCTTGATACTCCAATCCAGACCTTAGTCCTTGACTGTACCCC  671

seq1  CAGTTCCAGCCTTGGTCTCTATCTGGGTGTCCCAGGAGCTCTGCAGTCAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCAGCCTTGGTCTCTATCTGGGTGTCCCAGGAGCTCTGCAGTCAG  721

seq1  TTTGGCTCCCCAGCTCCAAGGGAGAGCTTATAGGAGCAGCGGCGTGAAGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTCCCCAGCTCCAAGGGAGAGCTTATAGGAGCAGCGGCGTGAAGT  771

seq1  GCTTTCTCTGCCACTCACCCATTCCCAGGATGCACTTGCTTTCATTGGGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTCTGCCACTCACCCATTCCCAGGATGCACTTGCTTTCATTGGGG  821

seq1  TGATGATGGTTCATTGTCCACCAAGGATGGTGGAGCAGGGCCTCCTGTAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATGGTTCATTGTCCACCAAGGATGGTGGAGCAGGGCCTCCTGTAA  871

seq1  CCATCATCCCTGTCCAGGTCCACTCTCCTCCTACTTGGAGGATGAGAAGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATCCCTGTCCAGGTCCACTCTCCTCCTACTTGGAGGATGAGAAGA  921

seq1  GGACCAGAGACCGATTGTCTGTCCTCTGAGTCCCAGCCCTGGAGTAGACT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAGAGACCGATTGTCTGTCCTCTGAGTCCCAGCCCTGGAGTAGACT  971

seq1  CAAGGTCTGATGTTCTCTTGGATCCCCAGGAGTCCCCAAAGGGTTAGGGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTCTGATGTTCTCTTGGATCCCCAGGAGTCCCCAAAGGGTTAGGGA  1021

seq1  GACCTGATACCTCCACCTGGTGCTCCTGTAAAAAGGCTGCAGGTCCCTTA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGATACCTCCACCTGGTGCTCCTGTAAAAAGGCTGCAGGTCCCTTA  1071

seq1  CTGGCCACCAGATGTCTCCTTGGTCCAATTGGCCAGGCATTGCCTTCTTC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCACCAGATGTCTCCTTGGTCCAATTGGCCAGGCATTGCCTTCTTC  1121

seq1  ATACTGATGTCTCCACCCCAACACACTCTCCCCAGACACAGCACAGCTAC  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGATGTCTCCACCCCAACACACTCTCCCCAGACACAGCACAGCTAC  1171

seq1  CCTCAAGATTCCCACCTGGTTGGCTGGAATTC  1229
      ||||||||||||||||||||||||||||||||
seq2  CCTCAAGATTCCCACCTGGTTGGCTGGAATTC  1203

seq1: chr19_45483075_45484081
seq2: B6Ng01-131M07.g_69_1069

seq1  GAATTCCACTGTCATAGAGAAATCCTCGCGGTTTTTGCCCATTTAAACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTGTCATAGAGAAATCCTCGCGGTTTTTGCCCATTTAAACAT  50

seq1  TGGGTTACTTGGCTTTTGTCGTTATTGTTGTTGAGCTATAGAAGTCCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTACTTGGCTTTTGTCGTTATTGTTGTTGAGCTATAGAAGTCCTCA  100

seq1  AGCTTCTGGATTCAGGTGATCCTCCTGCCTCAGCTTCCAGAGTGCTTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTGGATTCAGGTGATCCTCCTGCCTCAGCTTCCAGAGTGCTTCTC  150

seq1  CTAAGAAGCCCATCTTACGTTTACTCCTCCTCTTTCTCTTCTTCTCCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAGCCCATCTTACGTTTACTCCTCCTCTTTCTCTTCTTCTCCTCC  200

seq1  TCTTCTACTTTTTCTCTCCTTCTTCTCCTCCTGTTGCTGTCACACTGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTACTTTTTCTCTCCTTCTTCTCCTCCTGTTGCTGTCACACTGGGG  250

seq1  ATTGGACTCAGTGCTTCCTATATACAAGGCAAGCTTTACATTTTGCTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGACTCAGTGCTTCCTATATACAAGGCAAGCTTTACATTTTGCTACA  300

seq1  TTTATTTTGCACAAAAGTTATTTGTGTATGTGCCATATGAAGGTGTGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTGCACAAAAGTTATTTGTGTATGTGCCATATGAAGGTGTGTAC  350

seq1  ATGTGTGTAGAGTCTAGAGGTCACCTTCAGGTAGCATTTCTCAAGAGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTAGAGTCTAGAGGTCACCTTCAGGTAGCATTTCTCAAGAGCCC  400

seq1  TTAATTCTTTGAGGCAAGATCTCTCATTGGTTAGCCAGGAGCACACCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCTTTGAGGCAAGATCTCTCATTGGTTAGCCAGGAGCACACCATA  450

seq1  GGCTGGCTGCTCCACCTTTCCAGCCCTGGTGTTTGTAAACACACCATCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCTGCTCCACCTTTCCAGCCCTGGTGTTTGTAAACACACCATCAT  500

seq1  GTTTGGCTTGTTACAAGGATTCTGAGAGTCAAGCTCAGGGCTTCACATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGCTTGTTACAAGGATTCTGAGAGTCAAGCTCAGGGCTTCACATTT  550

seq1  ACACAAGCACTTTACTGAGAGTTACTACAGCGCACCCAGAAGTATTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGCACTTTACTGAGAGTTACTACAGCGCACCCAGAAGTATTTTCT  600

seq1  GAAGCCTTTCCCCCCATGTTTTTTCTGTGACTAATTATACACACACACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTTTCCCCCCATGTTTTTTCTGTGACTAATTATACACACACACAC  650

seq1  ACACACACACACACACACACACACGTCATATTACTTCATAGTTTAAAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACGTCATATTACTTCATAGTTTAAAAGC  700

seq1  CCTGAGGTTTTGTTGGTTTTTCTTTTTTTAATGACTTCCTTAATTTATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGTTTTGTTGGTTTTTCTTTTTTTAATGACTTCCTTAATTTATTT  750

seq1  TTATTTTTTGTACATTGGTGTTTCGCCTTCATCATGTGTGTTTGTGTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTTGTACATTGGTGTTTCGCCTTCATCATGTGTGTTTGTGTGAG  800

seq1  AGCCGGATGGACAGAACTGGAGTTATACACAGTTGTGAGCTGCTGTGTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGGATGGACAGAACTGGAGTTATACACAGTTGTGAGCTGCTGTGTAG  850

seq1  TTGCTGGGAATTGAACCCTAGTCCTCTGGAAAGGCTGCCAGTGCTCTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGGAATTGAACCCTAGTCCTCTGGAAAGGCTGCCAGTGCTCTTAA  900

seq1  CTCAGAGCTATTTTTCTGTCCTGTTATTTTCTTAGTCTTCACCTCTTGCT  950
      |||| ||||||||||||| |||||||||||| ||||||||||||||||||
seq2  CTCAAAGCTATTTTTCTG-CCTGTTATTTTC-TAGTCTTCACCTCTTGCT  948

seq1  TGTCATTTTGTGTATTGCTTGCCTGCCTTCCTCCTCGCCTCTCCTTCCCC  1000
      ||||||||| || | |||||||||||||| |||| ||||||||||| |||
seq2  TGTCATTTT-TGGAATGCTTGCCTGCCTT-CTCC-CGCCTCTCCTT-CCC  994

seq1  CTCTCCC  1007
      |||||||
seq2  CTCTCCC  1001