BAC Information

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BAC

Clone NameB6Ng01-132H11
Chromosome19 (Build37)
Map Location 57,453,302 - 57,682,973
singlet/doubletdoublet
Overlap geneAI450540, Trub1, LOC100043038
Upstream geneNrap, Casp7, 9930023K05Rik, Dclre1a, Nhlrc2, Adrb1, EG629643, A630007B06Rik, 1700010L13Rik, Tdrd1, Vwa2, Afap1l2, Ablim1, EG668259
Downstream geneAtrnl1, Gfra1, LOC100043503, 1700011F14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132H11.bB6Ng01-132H11.g
ACCDH933262DH933263
length1,1041,038
definitionDH933262|Mus musculus domesticus DNA, BAC clone: B6Ng01-132H11, 5' end.DH933263|Mus musculus domesticus DNA, BAC clone: B6Ng01-132H11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,453,302 - 57,454,406)(57,681,929 - 57,682,973)
sequence
gaattctttgttaaacctgacaagaagtcctgtgagtcagcttcctactt
cctcccacatgatttcgatacgtatttaaagtagaaacacatttattctt
cctttaatgaaaaacactgagtccttttacgttgaatttgacaagttccg
tgtgcgttctttcttaggacggccggatagctgtgaaggcctgcgagggc
ttgatgctcttggtgagcctaccggagcctgcggctgccaagtgccttgc
tcagagcacctgcctgtgcgagctgctgaccggcagactcacctccctgt
acaaggctctacctcagtcagtggaccccttagacattgaaaccgtggag
gcagttaactgggggtaagtgctattcgttctgtgttcattctatgaagg
tgtagcagtaccagggatcagtgagtgggatattctcatcttcagtcact
tagtggtcaggctggccgagctcagatacccttgcctttgcctcaggcat
catattctgcttctcaaactcaccacattgttcttattagaaaatagggc
ttttggcttagcgaggcaactctgttcttatagaagaccagagtttggtt
cccagcacccacacagggcagctcacaaccttcagcgatccagggaccca
ctcttctagctgctgtgggaacctgcacttacacacattcctacacatgc
atgcacacacacacatacacacacacacagacacatatacacatgtacac
ttctacacatacacacagacttggcaatgcggcaccacaccactgagcta
cgctttcgatttctattttgaaatagggacttattttaattgctcaggtt
aaccttgaacctctcttgtagtctaggcaggtcctgagatggcaatcctc
ctgccgcagccttctaagtagcagctgtaacagacctgtgcatcgggccc
agcttggatttccatacagtcacacatgtacacacatttttacacacata
catgcacatttctatacacacattgcaataccacacatttctacatacat
gcacatttctagaccataccaattgcattaccctaatgtaaaatcttaag
agaa
gaattcataggactggtgacagcagccatcactctggcaaagggttaaaa
acccccgaagagagaaaagggcaaaagccagtttcaccaaagtaaagtta
aattgtatagaactagtgattacaacttatccaagaagaaacatacgtgc
atttgttctctcaataattaactaatatcagggacccttggatatttggg
gcattatgttcacttctatttaaagtacttttaaaatttttaatatggta
gacaaaaacctaagagttctctttgccaatgtttgcaaaggacattcaaa
atgatagtttttaaagaacagggggaaataagtccactgatacagaattt
tgtcactctagaagcaaaggcttctattcagacgacagaaggcagaattg
cctgactgaaaggtgggctctgctctggctcttgttcaccattgactcac
acgagacctctgaaagcagccggaaataaagaaagtagcaggcaacacag
tctcagagcaggaaacaccatggtaggaccaagccagccaggcagcatct
ttaagacctaagagagcttagatggactctgacagattggggaataaaga
aaaagtcagatttaaatattcactaagaaatatgagtgaggtgagaggtg
tgtgctaatctgaaacatcgcaccctcccaaccaaaagctaacattctgc
ctccccctgggcccgttctttgcttccatccccctctctttgctgttgtg
cttgcaaacacacacaccactccttcttttgccaattttttctacttaac
acatttcaaacatattgttataagttaatccagagaaataaatccaaaga
ttctaatttcactaggctgggctatataatttttatttgaaaataaaatg
agcattctaaacttttctttctaaatatcacacgtattaccttacctcct
ccccacaatataaattgtcaggacgtggtataaaaattgtctttaatgaa
attagttatttttttaagtccatactatgaatcctcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_57453302_57454406
seq2: B6Ng01-132H11.b_45_1148

seq1  GAATTCTTTGTTAAACCTGACAAGAAGTCCTGTGAGTCAGCTTCCTACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTAAACCTGACAAGAAGTCCTGTGAGTCAGCTTCCTACTT  50

seq1  CCTCCCACATGATTTCGATACGTATTTAAAGTAGAAACACATTTATTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCACATGATTTCGATACGTATTTAAAGTAGAAACACATTTATTCTT  100

seq1  CCTTTAATGAAAAACACTGAGTCCTTTTACGTTGAATTTGACAAGTTCCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAATGAAAAACACTGAGTCCTTTTACGTTGAATTTGACAAGTTCCG  150

seq1  TGTGCGTTCTTTCTTAGGACGGCCGGATAGCTGTGAAGGCCTGCGAGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCGTTCTTTCTTAGGACGGCCGGATAGCTGTGAAGGCCTGCGAGGGC  200

seq1  TTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGC  250

seq1  TCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGT  300

seq1  ACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAG  350

seq1  GCAGTTAACTGGGGGTAAGTGCTATTCGTTCTGTGTTCATTCTATGAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTAACTGGGGGTAAGTGCTATTCGTTCTGTGTTCATTCTATGAAGG  400

seq1  TGTAGCAGTACCAGGGATCAGTGAGTGGGATATTCTCATCTTCAGTCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCAGTACCAGGGATCAGTGAGTGGGATATTCTCATCTTCAGTCACT  450

seq1  TAGTGGTCAGGCTGGCCGAGCTCAGATACCCTTGCCTTTGCCTCAGGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGTCAGGCTGGCCGAGCTCAGATACCCTTGCCTTTGCCTCAGGCAT  500

seq1  CATATTCTGCTTCTCAAACTCACCACATTGTTCTTATTAGAAAATAGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTCTGCTTCTCAAACTCACCACATTGTTCTTATTAGAAAATAGGGC  550

seq1  TTTTGGCTTAGCGAGGCAACTCTGTTCTTATAGAAGACCAGAGTTTGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGCTTAGCGAGGCAACTCTGTTCTTATAGAAGACCAGAGTTTGGTT  600

seq1  CCCAGCACCCACACAGGGCAGCTCACAACCTTCAGCGATCCAGGGACCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACCCACACAGGGCAGCTCACAACCTTCAGCGATCCAGGGACCCA  650

seq1  CTCTTCTAGCTGCTGTGGGAACCTGCACTTACACACATTCCTACACATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTAGCTGCTGTGGGAACCTGCACTTACACACATTCCTACACATGC  700

seq1  ATGCACACACACACATACACACACACACAGACACATATACACATGTACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACACACACACATACACACACACACAGACACATATACACATGTACAC  750

seq1  TTCTACACATACACACAGACTTGGCAATGCGGCACCACACCACTGAGCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACACATACACACAGACTTGGCAATGCGGCACCACACCACTGAGCTA  800

seq1  CGCTTTCGATTTCTATTTTGAAATAGGGACTTA-TTTAATTGCTCAGGTT  849
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CGCTTTCGATTTCTATTTTGAAATAGGGACTTATTTTAATTGCTCAGGTT  850

seq1  AACCTTGAACCTCTCTTGTAGTCTAGGCAGGTCCTGAGATGGCAATCCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTGAACCTCTCTTGTAGTCTAGGCAGGTCCTGAGATGGCAATCCTC  900

seq1  CTGCCGCAGCCTTCTAAGTAGCAGCTGTAACAGACCTGTGCATCGGGCCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCGCAGCCTTCTAAGTAGCAGCTGTAACAGACCTGTGCATCGGGCCC  950

seq1  AGCTTGGATTTCCATACAGTCACACATGTACACACATTTTTACACACATA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGGATTTCCATACAGTCACACATGTACACACATTTTTACACACATA  1000

seq1  CATGCACATTTCTATACACACATTGC-ATACCACACATTTCTACATACAT  1048
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CATGCACATTTCTATACACACATTGCAATACCACACATTTCTACATACAT  1050

seq1  GCACATTTCTAGACACATACACATTGCA-TACACTAAATGTAAAAATCTT  1097
      |||||||||||||| |||||  |||||| ||| || ||||| |||||| |
seq2  GCACATTTCTAGAC-CATACCAATTGCATTACCCT-AATGT-AAAATC-T  1096

seq1  TAAGAGAA  1105
      ||||||||
seq2  TAAGAGAA  1104

seq1: chr19_57681929_57682973
seq2: B6Ng01-132H11.g_66_1102 (reverse)

seq1  AGAGGAGTCATAGTCTGTGCCTTTAAAAAAATAACTAGATTTCATAAAAG  50
      |||||| ||||||| ||  |  ||||||||||||||| ||||||| ||||
seq2  AGAGGATTCATAGTATGGAC--TTAAAAAAATAACTA-ATTTCATTAAAG  47

seq1  ACAAATTTCTATGACCACGTCTTGGCAATTTATTATTTGTGGGGAGGAGG  100
      || ||||| ||| |||||||| || ||||||||   ||||||||||||||
seq2  AC-AATTTTTAT-ACCACGTCCTGACAATTTAT--ATTGTGGGGAGGAGG  93

seq1  TAAGGTAATACGTGTGGATATTTAGAAAGAAAAGTTTAAGAATGCTCATT  150
      ||||||||||||||| ||||||||||||||||||||| ||||||||||||
seq2  TAAGGTAATACGTGT-GATATTTAGAAAGAAAAGTTT-AGAATGCTCATT  141

seq1  TTATTTTCAATTAAAAATTATATTAGCCCAGCCTAGTGAATTTAGAATCT  200
      |||||||||| ||||||||||| ||||||||||||||||| |||||||||
seq2  TTATTTTCAAATAAAAATTATA-TAGCCCAGCCTAGTGAAATTAGAATCT  190

seq1  TTGGATTTATTTCTCTGGATTTACTTATAACAATATGTTTGAAATGTGTT  250
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTGGATTTATTTCTCTGGATTAACTTATAACAATATGTTTGAAATGTGTT  240

seq1  AAGTAG-AAAAATTGGCAGAAGAAGGAGTGGTGTGTGTGTTTGCAAGCAC  299
      |||||| ||||||||||| |||||||||||||||||||||||||||||||
seq2  AAGTAGAAAAAATTGGCAAAAGAAGGAGTGGTGTGTGTGTTTGCAAGCAC  290

seq1  AACAGC-AAGAGAGGGGGATGGAAGCAAAGAACGGGCCCAGGGGGAGGCA  348
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAAAGAGAGGGGGATGGAAGCAAAGAACGGGCCCAGGGGGAGGCA  340

seq1  GAATGTTAGCTTTTGGTTGGGAGGGTGCGATGTTTCAGATTAGCACACAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTAGCTTTTGGTTGGGAGGGTGCGATGTTTCAGATTAGCACACAC  390

seq1  CTCTCACCTCACTCATATTTCTTAGTGAATATTTAAATCTGACTTTTTCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACCTCACTCATATTTCTTAGTGAATATTTAAATCTGACTTTTTCT  440

seq1  TTATTCCCCAATCTGTCAGAGTCCATCTAAGCTCTCTTAGGTCTTAAAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCCCAATCTGTCAGAGTCCATCTAAGCTCTCTTAGGTCTTAAAGA  490

seq1  TGCTGCCTGGCTGGCTTGGTCCTACCATGGTGTTTCCTGCTCTGAGACTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCTGGCTGGCTTGGTCCTACCATGGTGTTTCCTGCTCTGAGACTG  540

seq1  TGTTGCCTGCTACTTTCTTTATTTCCGGCTGCTTTCAGAGGTCTCGTGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCCTGCTACTTTCTTTATTTCCGGCTGCTTTCAGAGGTCTCGTGTG  590

seq1  AGTCAATGGTGAACAAGAGCCAGAGCAGAGCCCACCTTTCAGTCAGGCAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAATGGTGAACAAGAGCCAGAGCAGAGCCCACCTTTCAGTCAGGCAA  640

seq1  TTCTGCCTTCTGTCGTCTGAATAGAAGCCTTTGCTTCTAGAGTGACAAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCTTCTGTCGTCTGAATAGAAGCCTTTGCTTCTAGAGTGACAAAA  690

seq1  TTCTGTATCAGTGGACTTATTTCCCCCTGTTCTTTAAAAACTATCATTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTATCAGTGGACTTATTTCCCCCTGTTCTTTAAAAACTATCATTTT  740

seq1  GAATGTCCTTTGCAAACATTGGCAAAGAGAACTCTTAGGTTTTTGTCTAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTCCTTTGCAAACATTGGCAAAGAGAACTCTTAGGTTTTTGTCTAC  790

seq1  CATATTAAAAATTTTAAAAGTACTTTAAATAGAAGTGAACATAATGCCCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTAAAAATTTTAAAAGTACTTTAAATAGAAGTGAACATAATGCCCC  840

seq1  AAATATCCAAGGGTCCCTGATATTAGTTAATTATTGAGAGAACAAATGCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCCAAGGGTCCCTGATATTAGTTAATTATTGAGAGAACAAATGCA  890

seq1  CGTATGTTTCTTCTTGGATAAGTTGTAATCACTAGTTCTATACAATTTAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATGTTTCTTCTTGGATAAGTTGTAATCACTAGTTCTATACAATTTAA  940

seq1  CTTTACTTTGGTGAAACTGGCTTTTGCCCTTTTCTCTCTTCGGGGGTTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTTTGGTGAAACTGGCTTTTGCCCTTTTCTCTCTTCGGGGGTTTT  990

seq1  TAACCCTTTGCCAGAGTGATGGCTGCTGTCACCAGTCCTATGAATTC  1045
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCTTTGCCAGAGTGATGGCTGCTGTCACCAGTCCTATGAATTC  1037