BAC Information

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BAC

Clone NameB6Ng01-133F20
Chromosome19 (Build37)17 (Build37)
Map Location 34,911,537 - 34,911,6716,528,252 - 6,528,700
singlet/doubletsingletsinglet
Overlap genePank1
Upstream geneLOC668127, Lipf, Lipk, EG383462, Lipn, Ankrd22, Stambpl1, Acta2, Fas, Ch25h, Lipa, Ifit2, Ifit3, OTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1, Slc16a12, LOC676714
Downstream geneMphosph1, LOC383464, LOC100042292, A830019P07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133F20.bB6Ng01-133F20.g
ACCDH933930DH933931
length1,017651
definitionDH933930|Mus musculus domesticus DNA, BAC clone: B6Ng01-133F20, 5' end.DH933931|Mus musculus domesticus DNA, BAC clone: B6Ng01-133F20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(34,911,537 - 34,911,671)(6,528,252 - 6,528,700)
sequence
gaattcaacaaaatcatccaggatctaaaaatggaagtagaaacaataaa
gaaatcaaaaagggagaccactctggaaacagaaaacctaggaaaaagtc
aagagccattgatgcaagcataaccaacagaatacaagagagagaagaga
tacagaagataccatagaaaacattgaaacaacagtgaaagaaaatgtga
aatacaaaaagatcctaaccccaaacatccaggaaatccaggacacaaga
agacaaaagcaggaggatttctgagttccaggccagcctggtctactgag
tgagattcaggacaggcagggctattcagagaaaccctgtctcgaaaaac
aaacaaacaaacaaataaaaacaacaaaaacaaaacaaagcccaaaaaga
aaaaaagaaaaaaaaggataataggtatagacgagaagaagatttccaac
ttaaagggccagtaagtatcttcaacaaaattatagaagaaaacttcccc
aacctaaagaaagagattcccatgagcatacaagaagcctacagaactcc
aaatagtttggaacagaaaagaaattccgctcatcacataataatcaaaa
caccaaatgcacaaaacaaaaaaagaatattaaaagaagtaagggaaaag
gtcaagtaacatatacaggcagacctatcagaattacaccagaattctca
ccagagactaggaaagccagaagatcagggcagatatcatacagatccta
tgagaacacaaatgccagcccaagctactatacccagcaaaactctcaat
taccatagatggagaaaccaaagtattccatgacaaaaccaaatttacac
aatatctttccacaaatccagcccttcaaaggataataaagggaaaactc
taacaaagggggaaactaagctcgaaaaaggcaacaaagtaatctttcaa
caaacctaagaagatagccacttgacagaattccaactctaacaacaaaa
tacagaagcacaacagc
gaattctctctggtcccattttccttcagcagtgagtttgtatacttttt
gatgtttctactgtgatgtagggtgttatttattattttctatatgttgt
gttttatgtgttaatatgtggatattttggggacaagattgggatgatga
tgcagaggagtatgatcttgctaaaaaaggggactgttttcatcataaaa
attcctaggacagaaataaatgacatctttgccttatttgctgctgctcc
tgcttttaaaacaagatcagtcaatcctgaaaggaaaatgccaaccaata
ggggattcttaggggccatgaaagaagccaggcgaaagggagatttggac
ttctgcttcccagtaacaaattttaaaggggagactccccaatgggaacc
tctttaaaaactcttaaagaactacagtattctgttaagaacatgggtcc
aagtgctccatacatttgacagattgtggaaatgttgggtagcatgtggc
taactccttatgattggcatcagactgcaaatgccactctttagcccatg
acagtttataggatggaggacagaatatgaggacagagcaagggaattgg
ttcagaattttatccgacaggaataaggcagataaacctactgtgtcaat
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_34911537_34911671
seq2: B6Ng01-133F20.b_314_433

seq1  GATTTCTGAGTTCGAGGCCAGCCTTGTCTACAGAGTGAGTTCCAGGACAG  50
      ||||||||||||| |||||||||| |||||| ||||||| | ||||||||
seq2  GATTTCTGAGTTCCAGGCCAGCCTGGTCTACTGAGTGAGATTCAGGACAG  50

seq1  CCAGGGCTACTCAGAGAAACCCTGTCTCGAAAAAAAACAAACAAACAAAC  100
       |||||||| |||||||||||||||||||||       ||||||||||||
seq2  GCAGGGCTATTCAGAGAAACCCTGTCTCGAA-------AAACAAACAAAC  93

seq1  AAACAAAAAACCCAAACAAAACAACAAAAACAAAA  135
      ||||||| |        ||||||||||||||||||
seq2  AAACAAATA--------AAAACAACAAAAACAAAA  120

seq1: chr17_6528252_6528700
seq2: B6Ng01-133F20.g_265_715

seq1  AAAATTCCTAGGACAGAAATAGATGACATCTCTGCCTTAATTGCTGCTGC  50
      ||||||||||||||||||||| ||||||||| ||||||| ||||||||||
seq2  AAAATTCCTAGGACAGAAATAAATGACATCTTTGCCTTATTTGCTGCTGC  50

seq1  TCCTGCTTTTAAAACAAGATCAGTCAATCCTGAAAGGAAAATGCCAACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTTTTAAAACAAGATCAGTCAATCCTGAAAGGAAAATGCCAACCA  100

seq1  ATAGGGGATTCTTAGGGGCCATGAAAGAAGCCAGGCGAAAGGGAGATTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGGATTCTTAGGGGCCATGAAAGAAGCCAGGCGAAAGGGAGATTTG  150

seq1  GACTTCTGCTTCCCAGTAACAAATTTTGAAGGGGAGACACCCCAATGGGA  200
      ||||||||||||||||||||||||||| |||||||||| |||||||||||
seq2  GACTTCTGCTTCCCAGTAACAAATTTTAAAGGGGAGACTCCCCAATGGGA  200

seq1  ACCTCTTTAAAAACTCTTAAAGAACTAAAGTATTCTGTTAAGAACATGGG  250
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACCTCTTTAAAAACTCTTAAAGAACTACAGTATTCTGTTAAGAACATGGG  250

seq1  TCCAAGTGCTCCATACATTTGACAGATTGTGGAAATGTTGGGTAGCATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTGCTCCATACATTTGACAGATTGTGGAAATGTTGGGTAGCATGT  300

seq1  GGCTAACTCCTTATGATTGGCATCAGACTGCAAAGTCCACTC-TTAGCCC  349
      ||||||||||||||||||||||||||||||||||  |||||| |||||||
seq2  GGCTAACTCCTTATGATTGGCATCAGACTGCAAATGCCACTCTTTAGCCC  350

seq1  AGGACAGTTTATAGTATGGAGGACAGAATATGAGGATAGAGCAAGGGAAG  399
      | |||||||||||| ||||||||||||||||||||| |||||||||||| 
seq2  ATGACAGTTTATAGGATGGAGGACAGAATATGAGGACAGAGCAAGGGAAT  400

seq1  TGGTTCAGAA-TTTAGCTGTTAGGAAAAAGGCAGATAAACCTACTATGTC  448
      |||||||||| |||| | |  ||||| |||||||||||||||||| ||||
seq2  TGGTTCAGAATTTTATCCGACAGGAATAAGGCAGATAAACCTACTGTGTC  450

seq1  A  449
      |
seq2  A  451