BAC Information

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BAC

Clone NameB6Ng01-142L20
Chromosome19 (Build37)
Map Location 53,859,697 - 53,974,519
singlet/doubletdoublet
Overlap geneRbm20, LOC100042979, Pdcd4
Upstream geneLOC100043450, Xpnpep1, LOC668545, LOC674277, Add3, 1700001K23Rik, Mxi1, Smndc1, Dusp5, LOC100043462, Smc3
Downstream gene2310002J21Rik, Shoc2, Adra2a, LOC100043004
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142L20.bB6Ng01-142L20.g
ACCDH940859DH940860
length1,0761,029
definitionDH940859|Mus musculus domesticus DNA, BAC clone: B6Ng01-142L20, 5' end.DH940860|Mus musculus domesticus DNA, BAC clone: B6Ng01-142L20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,859,697 - 53,860,788)(53,973,468 - 53,974,519)
sequence
gaattcataggtatcctgataggcagaggacttgtgggctccaggttggc
catgtttgataggccttctctgactgctcctctgtagtgtggaattaaag
agcccatccctctatgtgttgttgttcttttatagagggttaagtaattt
cttgggcaataagttaaatcttggccttgaaaaaaaaaaaagagccatca
agggaactctactcttaactggcttccctgcccctgtgtggctctcagct
gtcctgtggtggctaaggtgcagtctcttcaagagtgtctgtaagggcag
ctggctctgatgcagtctggagaggccacattagtcagtggagtcttctc
cattgccctgatccttaacactccgacgtgtgtctgtgactgtgaaggtg
gattcctgcctctggttacagcttagggcacatcagcaaataagttcagg
ccactcataagtttgcaagtctagactctggcttccccataatgtcacgc
tttggccagttggtgttggatcaagatttccaaactttaaactctaaatg
tcagtactgaagagataagtcaggcagtaaagtactcgccttgcaagcat
gaggacctgaattgatcccaagaactcatgttaaaatgctgggcatggta
gcattgggctcgacatcccagttcaggggaggtggagatagacagaccca
tggggctttttggtcatccagcgtagacctgtctccaaaagcaatgaccc
ctgagaggatggtgttgtggaatagtggctaaggtggtccttgggtctcc
agacatatgctcacacagacaaacacagtgggacacacacacacacacac
acacacacacacacacacacacacacacacggattccaaatgttgaccat
gaatttgtgacagataggcattcagattccacatagatggaacctgagaa
atgccatgggcatgagatataccgtaatcatttgttcatcagaaacatcc
attgggcttcttctggcagctcagtactaggggctatatagcaccttcct
ccgaaagttacagttagaattctaca
gaattcccctacttcaaacctttcatttgatgagtagagaattagatgca
cgggaatttagtgagttgtccaaaccctcataaccagttacgatcaaagc
caggataggaaagaaggtctcagtgcacgggccatgtaggaatcatatgg
acaggaagactggccgtctggaagccaggctgcactaggccctttctact
gctcagccctgagtttttcaaatggcagtcttaaagccccagaagtgatg
ggcaggatggagtcgggaggaagcgcctgactgacgttaaaagtgcttca
gagacggttccaagaacctgggcaagaagaccacggtgtgaccagaggca
cagcacggtaagcagatgcagtgtgtcagcacagtatatacccagaaggt
gcagtgtgtcagcacggtatatacccagaagggctgagcagctccgaagc
tttgacttccgcagttcggctctgaaagactttcgtggcatcttgtcttt
catacagcttgtttgccaaatcagtcctgctacataacaagttagaaacg
agctcaactcaggatgaggaaagccagaaaaaaacgtttccctggaaaat
aaaataaaattttgccacctctacacctacacttgctctgacttccgagc
ccacgcacagtccagcgcctctagcccttgcagtggtcagttggggaacc
ccatactttcctgtgcttactaccactggtgtcgggctcctcccactgca
tctctggaggctccatttgtgttcttttggagggttcttggccaggcttc
acatatctgagaattaccctctcttctcctccgttgtgtgttgagacatt
tagtcgccattatcctcttcttgctcctcagacgccaaacaggctataga
gcctcgagagaatgggagatttttttttttcgtgcagtcatgagagtacg
atggtgcagcgtcatgatcaaagtcactcttctagaatgcaagaagctgt
aagggtgtgggaggctcagagaaaggatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_53859697_53860788
seq2: B6Ng01-142L20.b_30_1105

seq1  GAATTCATAGGTATCCTGATAGGCAGAGGACTTGTGGGCTCCAGGTTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGGTATCCTGATAGGCAGAGGACTTGTGGGCTCCAGGTTGGC  50

seq1  CATGTTTGATAGGCCTTCTCTGACTGCTCCTCTGTAGTGTGGAATTAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTGATAGGCCTTCTCTGACTGCTCCTCTGTAGTGTGGAATTAAAG  100

seq1  AGCCCATCCCTCTATGTGTTGTTGTTCTTTTATAGAGGGTTAAGTAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATCCCTCTATGTGTTGTTGTTCTTTTATAGAGGGTTAAGTAATTT  150

seq1  CTTGGGCAATAAGTTAAATCTTGGCCTTGAAAAAAAAAAAAGAGCCATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGCAATAAGTTAAATCTTGGCCTTGAAAAAAAAAAAAGAGCCATCA  200

seq1  AGGGAACTCTACTCTTAACTGGCTTCCCTGCCCCTGTGTGGCTCTCAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACTCTACTCTTAACTGGCTTCCCTGCCCCTGTGTGGCTCTCAGCT  250

seq1  GTCCTGTGGTGGCTAAGGTGCAGTCTCTTCAAGAGTGTCTGTAAGGGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTGGTGGCTAAGGTGCAGTCTCTTCAAGAGTGTCTGTAAGGGCAG  300

seq1  CTGGCTCTGATGCAGTCTGGAGAGGCCACATTAGTCAGTGGAGTCTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCTGATGCAGTCTGGAGAGGCCACATTAGTCAGTGGAGTCTTCTC  350

seq1  CATTGCCCTGATCCTTAACACTCCGACGTGTGTCTGTGACTGTGAAGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCCCTGATCCTTAACACTCCGACGTGTGTCTGTGACTGTGAAGGTG  400

seq1  GATTCCTGCCTCTGGTTACAGCTTAGGGCACATCAGCAAATAAGTTCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTGCCTCTGGTTACAGCTTAGGGCACATCAGCAAATAAGTTCAGG  450

seq1  CCACTCATAAGTTTGCAAGTCTAGACTCTGGCTTCCCCATAATGTCACGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCATAAGTTTGCAAGTCTAGACTCTGGCTTCCCCATAATGTCACGC  500

seq1  TTTGGCCAGTTGGTGTTGGATCAAGATTTCCAAACTTTAAACTCTAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCCAGTTGGTGTTGGATCAAGATTTCCAAACTTTAAACTCTAAATG  550

seq1  TCAGTACTGAAGAGATAAGTCAGGCAGTAAAGTACTCGCCTTGCAAGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTACTGAAGAGATAAGTCAGGCAGTAAAGTACTCGCCTTGCAAGCAT  600

seq1  GAGGACCTGAATTGATCCCAAGAACTCATGTTAAAATGCTGGGCATGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACCTGAATTGATCCCAAGAACTCATGTTAAAATGCTGGGCATGGTA  650

seq1  GCATTGGGCTCGACATCCCAGTTCAGGGGAGGTGGAGATAGACAGACCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGGGCTCGACATCCCAGTTCAGGGGAGGTGGAGATAGACAGACCCA  700

seq1  TGGGGCTTTTTGGTCATCCAGCGTAGACCTGTCTCCAAAAGCAATGACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTTTTTGGTCATCCAGCGTAGACCTGTCTCCAAAAGCAATGACCC  750

seq1  CTGAGAGGATGGTGTTGTGGAATAGTGGCTAAGGTGGTCCTTGGGTCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGGATGGTGTTGTGGAATAGTGGCTAAGGTGGTCCTTGGGTCTCC  800

seq1  AGACATATGCTCACACAGACAAACACAGTGGCACACACACACACACACAC  850
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGACATATGCTCACACAGACAAACACAGTGGGACACACACACACACACAC  850

seq1  ACACACACACACACACACACACACACACACGGATTCCAAATGTTGACCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACGGATTCCAAATGTTGACCAT  900

seq1  GAATTTGTGACAGATAGGCATTCAGATTCCACAATAGGATGGAAACCTGA  950
      |||||||||||||||||||||||||||||||| ||| ||||| |||||||
seq2  GAATTTGTGACAGATAGGCATTCAGATTCCAC-ATA-GATGG-AACCTGA  947

seq1  GAAATTGCCATGGGCATGAGAATATACCGTAAATCATTTGTTCATTCAGG  1000
      |||| ||||||||||||||| ||||||||| ||||||||||||| ||| |
seq2  GAAA-TGCCATGGGCATGAG-ATATACCGT-AATCATTTGTTCA-TCA-G  992

seq1  AAACATTCAATGGGCTTCTTTCTGGCAAGCTCAGTACTAGGGGGCTATAT  1050
      |||||| || |||||||| ||||||| |||||||||||| ||||||||||
seq2  AAACATCCATTGGGCTTC-TTCTGGC-AGCTCAGTACTA-GGGGCTATAT  1039

seq1  AGCACCCTTTCCTCCGAGAGGTTACAGTTTAGAATATCTACA  1092
      ||||||  ||||||||| | ||||||| ||||||| ||||||
seq2  AGCACC--TTCCTCCGA-AAGTTACAG-TTAGAAT-TCTACA  1076

seq1: chr19_53973468_53974519
seq2: B6Ng01-142L20.g_67_1095 (reverse)

seq1  CATCCCTTTTCTCTTGAGCCTCCCCACCACCCCTTTCCAGCTTTCTCTGC  50
      |||||  |||||| ||||||||    |||| || || |||| |||| |||
seq2  CATCC--TTTCTC-TGAGCCTC----CCACACCCTTACAGC-TTCT-TGC  41

seq1  ATTTCCTAGGAGAGTTGACTTTGAATCATGACGCTGCACCATTCGTTACT  100
      |||  |||| |||| |||||||| ||||||||||||||||| ||| ||||
seq2  ATT--CTAGAAGAG-TGACTTTG-ATCATGACGCTGCACCA-TCG-TACT  85

seq1  CTCATTGACTGCCACGAAAAAAAAAAATCTCCCATTTCTCTCCGAGGCTC  150
      |||| |||||| |||||||||||||||||||||| |||||| ||||||| 
seq2  CTCA-TGACTG-CACGAAAAAAAAAAATCTCCCA-TTCTCT-CGAGGCT-  130

seq1  CTATTAGCCTTGTTTGGCGTCTGAGGGGCAAG-AGAGGATAATGGCGACT  199
      ||| ||||| |||||||||||||||| ||||| |||||||||||||||||
seq2  CTA-TAGCC-TGTTTGGCGTCTGAGGAGCAAGAAGAGGATAATGGCGACT  178

seq1  AAATGTTCTCAAACACACAACGGA-GAGAAGAGAGGGTTAATTCTCAGAT  248
      ||||| |||| ||||||||||||| |||||||||||| ||||||||||||
seq2  AAATG-TCTC-AACACACAACGGAGGAGAAGAGAGGG-TAATTCTCAGAT  225

seq1  ATGTGAAGCCTGGCCAAGAACCCTCCAAAAGAACACAAATGGAGCCTCCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAGCCTGGCCAAGAACCCTCCAAAAGAACACAAATGGAGCCTCCA  275

seq1  GAGATGCAGTGGGAGGAGCCCGACACCAGTGGTAGTAAGCACAGGAAAGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCAGTGGGAGGAGCCCGACACCAGTGGTAGTAAGCACAGGAAAGT  325

seq1  ATGGGGTTCCCCAACTGACCACTGCAAGGGCTAGAGGCGCTGGACTGTGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGTTCCCCAACTGACCACTGCAAGGGCTAGAGGCGCTGGACTGTGC  375

seq1  GTGGGCTCGGAAGTCAGAGCAAGTGTAGGTGTAGAGGTGGCAAAATTTTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCTCGGAAGTCAGAGCAAGTGTAGGTGTAGAGGTGGCAAAATTTTA  425

seq1  TTTTATTTTCCAGGGAAACGTTTTTTTCTGGCTTTCCTCATCCTGAGTTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTCCAGGGAAACGTTTTTTTCTGGCTTTCCTCATCCTGAGTTG  475

seq1  AGCTCGTTTCTAACTTGTTATGTAGCAGGACTGATTTGGCAAACAAGCTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCGTTTCTAACTTGTTATGTAGCAGGACTGATTTGGCAAACAAGCTG  525

seq1  TATGAAAGACAAGATGCCACGAAAGTCTTTCAGAGCCGAACTGCGGAAGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAGACAAGATGCCACGAAAGTCTTTCAGAGCCGAACTGCGGAAGT  575

seq1  CAAAGCTTCGGAGCTGCTCAGCCCTTCTGGGTATATACCGTGCTGACACA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTTCGGAGCTGCTCAGCCCTTCTGGGTATATACCGTGCTGACACA  625

seq1  CTGCACCTTCTGGGTATATACTGTGCTGACACACTGCATCTGCTTACCGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACCTTCTGGGTATATACTGTGCTGACACACTGCATCTGCTTACCGT  675

seq1  GCTGTGCCTCTGGTCACACCGTGGTCTTCTTGCCCAGGTTCTTGGAACCG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCCTCTGGTCACACCGTGGTCTTCTTGCCCAGGTTCTTGGAACCG  725

seq1  TCTCTGAAGCACTTTTAACGTCAGTCAGGCGCTTCCTCCCGACTCCATCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAAGCACTTTTAACGTCAGTCAGGCGCTTCCTCCCGACTCCATCC  775

seq1  TGCCCATCACTTCTGGGGCTTTAAGACTGCCATTTGAAAAACTCAGGGCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATCACTTCTGGGGCTTTAAGACTGCCATTTGAAAAACTCAGGGCT  825

seq1  GAGCAGTAGAAAGGGCCTAGTGCAGCCTGGCTTCCAGACGGCCAGTCTTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTAGAAAGGGCCTAGTGCAGCCTGGCTTCCAGACGGCCAGTCTTC  875

seq1  CTGTCCATATGATTCCTACATGGCCCGTGCACTGAGACCTTCTTTCCTAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCATATGATTCCTACATGGCCCGTGCACTGAGACCTTCTTTCCTAT  925

seq1  CCTGGCTTTGATCGTAACTGGTTATGAGGGTTTGGACAACTCACTAAATT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTTTGATCGTAACTGGTTATGAGGGTTTGGACAACTCACTAAATT  975

seq1  CCCGTGCATCTAATTCTCTACTCATCAAATGAAAGGTTTGAAGTAGGGGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTGCATCTAATTCTCTACTCATCAAATGAAAGGTTTGAAGTAGGGGA  1025

seq1  ATTC  1052
      ||||
seq2  ATTC  1029