BAC Information

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BAC

Clone NameB6Ng01-143I04
Chromosome19 (Build37)
Map Location 41,174,198 - 41,294,231
singlet/doubletdoublet
Overlap geneTll2, Tm9sf3
Upstream geneCyp2c50, Cyp2c70, LOC545289, LOC676923, Pdlim1, LOC435599, Sorbs1, A930028N01Rik, Aldh18a1, LOC100043135, 4930521E07Rik, EG667723, Entpd1, EG667720, EG668310, EG668311, Ccnj, LOC664819, E030044B06Rik, E130314M14Rik, Zfp518, Blnk, LOC100043155, Dntt, Tmem10
Downstream genePik3ap1, LOC100043167, EG627352, Lcor, AI606181, Slit1, Arhgap19, Frat1, Frat2, Rrp12, LOC100042609, Pgam1, Exosc1, Zdhhc16, Mms19l, Ubtd1, Ankrd2, 0610010D20Rik, 4933411K16Rik, BC023055, Pi4k2a, Avpi1, Marveld1, EG628994, LOC100042633, Zfyve27, Sfrp5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143I04.bB6Ng01-143I04.g
ACCDH941427DH941428
length1,1541,018
definitionDH941427|Mus musculus domesticus DNA, BAC clone: B6Ng01-143I04, 5' end.DH941428|Mus musculus domesticus DNA, BAC clone: B6Ng01-143I04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,293,063 - 41,294,231)(41,174,198 - 41,175,223)
sequence
gaattctcccataataacataggcctcttctggcctatgttatttgctca
ttcctggtaccaatttatgccgtagtttgctttcttttactgataaaaca
ccagcttggggagatggatttatttggcatatataccccaatcacagtcc
acagtgaaaatcagggcaggaactgaatcctgcttactggcttcctcccg
tggcttgctcagcctgctgtcgtgtacaacccagtgccacctgcccaggg
attagcactgcctgcagtggtcttggctttctcacatcaaccagaaaatg
ccccaaagacttgcctacaagccagtctaatgcagcctacaagccagtct
aatgcagcctacaagccagtctaatgcagccagtctcccaatgagggact
tctccccagattattctaggttgtgtcaagttgacaaagagtaaccagca
caactcataagtataaataaataaatagatagataggtgtctttgttggc
catacgctgtgagtatactacaagtattggtgggtgcctggaagtgcaca
tcagagaggccagggttggctcgttactgggctgttctgccggggagtaa
tctcctagacaggagtgatgtttcccctacagtgctgatcctcactgctc
acttgctttcaaaataagtgaataaaaaaaggggtttttattttattttt
tgagattatatataattgcatggtttccctctttccttctttcctccaaa
cttttcccttaacctgttgcaagggatctgtaaatagtttctaaaaggat
atattattgaataaatagattgcaaaacaggagagaaatttcttaaaaag
aaggaccctgttctgaattcaggagtttgagcaatggattttaaagagaa
ttttgttttcttcttgagaaatattagtgctctttctctcactgtcctct
gagacagcgtcagtctctgtcagactctgtcagactgtggctctgatttg
tttgtttcttttctaatctgaatatctagtttatcactgtttttctacta
ataaatgttttataaaatgtgaaatatattactgagtgggttgtgttctt
aaagtggacgatgaaagatcgacttttattttacaattgaattggggcgt
gctc
gaattcaaagtgactaggagttgggaataacctgaaaagacagccaaccc
taccaccatggacaggatctctttaagggtggcttctcagacccttgcct
actttttctcagaggtttccttgggttgtctcgctcctcaaactctcagc
tcattggtcctccatgaatgtaatgccctctctactattttttccctctc
tgcttccctcttccaactcaaacgaaccaacttctagccttcctccttgt
ctgttcagcacacactccttatcagcttgatcgcccttctccagtgagag
gatagcttgtccataccccagtgtttcactcagtggagagcacacagagt
aaccatgagtgtcaggtgttcttgggctcaacaatgactgaaatgagttg
gtcagtgggtgccaaaagatgctctaggcagggaggtgaaattgtctgtg
gccattaataaatgtagtagtaaccatgttgaaacagtgttcaaagcaac
tatttactcattgtactgaaatatgcaaagcactttcttaggcatctaga
catttttcagaaattttggagtaagggaaatatataggataatatggagc
agtagaaagagatcaggattctgggcaagttgggtcaggttgggccaacc
aatacaatccaatcatatagacttggatgatggttatttggcttctctga
gccttcctctacttttaaaaacaacaagagcggtgttggcttttgtggcg
attgaaaattatgcgcatgaaggactggtatattgtcgatgtgcagggct
gcatttcagacaactctggtgcagtttctgcacctccaggagttggaaag
acaatgatgggaagggtagaaagagagacagcctgggcaaaagggcagag
aagtgaggagttgagagagggccagggcagaggcagttgataatagggcg
gcatgatgctcagtggagaaggattgggcagatgaaggggcacagcagtc
taagatgtgaaccagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_41293063_41294231
seq2: B6Ng01-143I04.b_50_1203 (reverse)

seq1  GAGCA-GCCCCAATCTACATTTGTAAAAT-AAAGTCGATTCCTTCATTCG  48
      ||||| |||||||  | || ||||||||| |||||||| || |||| |||
seq2  GAGCACGCCCCAA--TTCAATTGTAAAATAAAAGTCGA-TCTTTCA-TCG  46

seq1  TCCACTTTTTAAG-ACACAACACCACTCAAGTAATATATTTCACATTTTA  97
      |||||  |||||| ||||||| |||||| |||||||||||||||||||||
seq2  TCCAC--TTTAAGAACACAAC-CCACTC-AGTAATATATTTCACATTTTA  92

seq1  TAAAACATTTTATTAAGTAGAAAAACAAGTGATAAACTAAGAATATACAG  147
      ||||||| |||||| ||||||||||| ||||||||||||   |||| |||
seq2  TAAAACA-TTTATT-AGTAGAAAAAC-AGTGATAAACTA--GATATTCAG  137

seq1  AATTAGAAAAGAAAACAAACAAATCAGGAGGCCACAGTCTGACAGAGTCT  197
       |||||||||| |||||||||||||||   ||||||||||||||||||||
seq2  -ATTAGAAAAG-AAACAAACAAATCAG--AGCCACAGTCTGACAGAGTCT  183

seq1  GACAGAGACTGACGCTGTCTCAGAGGACAGTGAGAGAAAGAGCACTAATA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGACTGACGCTGTCTCAGAGGACAGTGAGAGAAAGAGCACTAATA  233

seq1  TTTCTCAAGAAGAAAACAAAATTCTCTTTAAAATCCATTGCTCAAACCTC  297
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTCTCAAGAAGAAAACAAAATTCTCTTTAAAATCCATTGCTCAAA-CTC  282

seq1  CTGAATTCAGAACAGGGTCCTTCTTTTTAAGAAATTTCTCTCCTGTTTTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTCAGAACAGGGTCCTTCTTTTTAAGAAATTTCTCTCCTGTTTTG  332

seq1  CAATCTATTTATTCAATAATATATCCTTTTAGAAACTATTTACAGATCCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTATTTATTCAATAATATATCCTTTTAGAAACTATTTACAGATCCC  382

seq1  TTGCAACAGGTTAAGGGAAAAGTTTGGAGGAAAGAAGGAAAGAGGGAAAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAACAGGTTAAGGGAAAAGTTTGGAGGAAAGAAGGAAAGAGGGAAAC  432

seq1  CATGCAATTATATATAATCTCAAAAAATAAAATAAAAACCCCTTTTTTTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAATTATATATAATCTCAAAAAATAAAATAAAAACCCCTTTTTTTA  482

seq1  TTCACTTATTTTGAAAGCAAGTGAGCAGTGAGGATCAGCACTGTAGGGGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTATTTTGAAAGCAAGTGAGCAGTGAGGATCAGCACTGTAGGGGA  532

seq1  AACATCACTCCTGTCTAGGAGATTACTCCCCGGCAGAACAGCCCAGTAAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCACTCCTGTCTAGGAGATTACTCCCCGGCAGAACAGCCCAGTAAC  582

seq1  GAGCCAACCCTGGCCTCTCTGATGTGCACTTCCAGGCACCCACCAATACT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAACCCTGGCCTCTCTGATGTGCACTTCCAGGCACCCACCAATACT  632

seq1  TGTAGTATACTCACAGCGTATGGCCAACAAAGACACCTATCTATCTATTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTATACTCACAGCGTATGGCCAACAAAGACACCTATCTATCTATTT  682

seq1  ATTTATTTATACTTATGAGTTGTGCTGGTTACTCTTTGTCAACTTGACAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTATACTTATGAGTTGTGCTGGTTACTCTTTGTCAACTTGACAC  732

seq1  AACCTAGAATAATCTGGGGAGAAGTCCCTCATTGGGAGACTGGCTGCATT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAGAATAATCTGGGGAGAAGTCCCTCATTGGGAGACTGGCTGCATT  782

seq1  AGACTGGCTTGTAGGCTGCATTAGACTGGCTTGTAGGCTGCATTAGACTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGCTTGTAGGCTGCATTAGACTGGCTTGTAGGCTGCATTAGACTG  832

seq1  GCTTGTAGGCAAGTCTTTGGGGCATTTTCTGGTTGATGTGAGAAAGCCAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTAGGCAAGTCTTTGGGGCATTTTCTGGTTGATGTGAGAAAGCCAA  882

seq1  GACCACTGCAGGCAGTGCTAATCCCTGGGCAGGTGGCACTGGGTTGTACA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACTGCAGGCAGTGCTAATCCCTGGGCAGGTGGCACTGGGTTGTACA  932

seq1  CGACAGCAGGCTGAGCAAGCCACGGGAGGAAGCCAGTAAGCAGGATTCAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAGCAGGCTGAGCAAGCCACGGGAGGAAGCCAGTAAGCAGGATTCAG  982

seq1  TTCCTGCCCTGATTTTCACTGTGGACTGTGATTGGGGTATATATGCCAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCCCTGATTTTCACTGTGGACTGTGATTGGGGTATATATGCCAAA  1032

seq1  TAAATCCATCTCCCCAAGCTGGTGTTTTATCAGTAAAAGAAAGCAAACTA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCCATCTCCCCAAGCTGGTGTTTTATCAGTAAAAGAAAGCAAACTA  1082

seq1  CGGCATAAATTGGTACCAGGAATGAGCAAATAACATAGGCCAGAAGAGGC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCATAAATTGGTACCAGGAATGAGCAAATAACATAGGCCAGAAGAGGC  1132

seq1  CTATGTTATTATGGGAGAATTC  1169
      ||||||||||||||||||||||
seq2  CTATGTTATTATGGGAGAATTC  1154

seq1: chr19_41174198_41175223
seq2: B6Ng01-143I04.g_68_1085

seq1  GAATTCAAAGTGACTAGGAGTTGGGAATAACCTGAAAAGACAGCCAACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGTGACTAGGAGTTGGGAATAACCTGAAAAGACAGCCAACCC  50

seq1  TACCACCATGGACAGGATCTCTTTAAGGGTGGCTTCTCAGACCCTTGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACCATGGACAGGATCTCTTTAAGGGTGGCTTCTCAGACCCTTGCCT  100

seq1  ACTTTTTCTCAGAGGTTTCCTTGGGTTGTCTCGCTCCTCAAACTCTCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTCTCAGAGGTTTCCTTGGGTTGTCTCGCTCCTCAAACTCTCAGC  150

seq1  TCATTGGTCCTCCATGAATGTAATGCCCTCTCTACTATTTTTTCCCTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGGTCCTCCATGAATGTAATGCCCTCTCTACTATTTTTTCCCTCTC  200

seq1  TGCTTCCCTCTTCCAACTCAAACGAACCAACTTCTAGCCTTCCTCCTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCCTCTTCCAACTCAAACGAACCAACTTCTAGCCTTCCTCCTTGT  250

seq1  CTGTTCAGCACACACTCCTTATCAGCTTGATCGCCCTTCTCCAGTGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCAGCACACACTCCTTATCAGCTTGATCGCCCTTCTCCAGTGAGAG  300

seq1  GATAGCTTGTCCATACCCCAGTGTTTCACTCAGTGGAGAGCACACAGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCTTGTCCATACCCCAGTGTTTCACTCAGTGGAGAGCACACAGAGT  350

seq1  AACCATGAGTGTCAGGTGTTCTTGGGCTCAACAATGACTGAAATGAGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGAGTGTCAGGTGTTCTTGGGCTCAACAATGACTGAAATGAGTTG  400

seq1  GTCAGTGGGTGCCAAAAGATGCTCTAGGCAGGGAGGTGAAATTGTCTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGGGTGCCAAAAGATGCTCTAGGCAGGGAGGTGAAATTGTCTGTG  450

seq1  GCCATTAATAAATGTAGTAGTAACCATGTTGAAACAGTGTTCAAAGCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTAATAAATGTAGTAGTAACCATGTTGAAACAGTGTTCAAAGCAAC  500

seq1  TATTTACTCATTGTACTGAAATATGCAAAGCACTTTCTTAGGCATCTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACTCATTGTACTGAAATATGCAAAGCACTTTCTTAGGCATCTAGA  550

seq1  CATTTTTCAGAAATTTTGGAGTAAGGGAAATATATAGGATAATATGGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTCAGAAATTTTGGAGTAAGGGAAATATATAGGATAATATGGAGC  600

seq1  AGTAGAAAGAGATCAGGATTCTGGGCAAGTTGGGTCAGGTTGGGCCAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAAGAGATCAGGATTCTGGGCAAGTTGGGTCAGGTTGGGCCAACC  650

seq1  AATACAATCCAATCATATAGACTTGGATGATGGTTATTTGGCTTCTCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAATCCAATCATATAGACTTGGATGATGGTTATTTGGCTTCTCTGA  700

seq1  GCCTTCCTCTACTTTTAAAAACAACAAGAGCGGTGTTGGCTTTTGTGGCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCTCTACTTTTAAAAACAACAAGAGCGGTGTTGGCTTTTGTGGCG  750

seq1  ATTGAAAATTATGCGCATGAAGGACTGGTATATTGTCGATGTGCAGGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAATTATGCGCATGAAGGACTGGTATATTGTCGATGTGCAGGGCT  800

seq1  GCATTTCAGACAACTCTGGTGCAGTTTCTGCACCTCCAGGAGTTGGAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCAGACAACTCTGGTGCAGTTTCTGCACCTCCAGGAGTTGGAAAG  850

seq1  ACAATGATGGGAAGGGTAGAAGGAGAGACAGCCTGGGCAAAAGGGCAGAG  900
      ||||||||||||||||||||| ||||||||||||||||||||||||||| 
seq2  ACAATGATGGGAAGGGTAGAAAGAGAGACAGCCTGGGCAAAAGGGCAGA-  899

seq1  GAGGTGAGGAGGTGAGGAGAGGGGCAGGGGCAGAGGCAGGTGAAGAGAGG  950
      || |||||||| ||| ||||||| || |||||||||||| |||  | | |
seq2  GAAGTGAGGAGTTGA-GAGAGGGCCA-GGGCAGAGGCAGTTGATAATA-G  946

seq1  GGCGGCAAGGATGGCTCAGTGAAGAAGGAATGGGCAGATGAGAGGGGCAC  1000
      |||||| | ||| |||||||| ||||||| ||||||||||| ||||||||
seq2  GGCGGC-ATGAT-GCTCAGTGGAGAAGGATTGGGCAGATGA-AGGGGCAC  993

seq1  AGCAGGTCTAAGAAGTGGACCAGAGA  1026
      |||| |||||||| ||| ||||||||
seq2  AGCA-GTCTAAGATGTGAACCAGAGA  1018