BAC Information

Click to search

BAC

Clone NameB6Ng01-145I03
Chromosome19 (Build37)
Map Location 55,828,967 - 55,958,736
singlet/doubletdoublet
Overlap geneTcf7l2, Ppnr
Upstream geneGpam, Tectb, Gucy2g, Acsl5, Zdhhc6, Vti1a, LOC100043479
Downstream geneLOC100043484, Habp2, Nrap, Casp7, 9930023K05Rik, Dclre1a, Nhlrc2, Adrb1, EG629643, A630007B06Rik, 1700010L13Rik, Tdrd1, Vwa2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145I03.bB6Ng01-145I03.g
ACCDH942893DH942894
length7471,073
definitionDH942893|Mus musculus domesticus DNA, BAC clone: B6Ng01-145I03, 5' end.DH942894|Mus musculus domesticus DNA, BAC clone: B6Ng01-145I03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,828,967 - 55,829,713)(55,957,645 - 55,958,736)
sequence
gaattccgtggacacatttgttttcccagaaatagatttgtgtctgagag
ccaggattcagttgttagagatgtagggggcggggcttctacttgatccc
tgctagtggctccttacagccctctctgccttcagtctccgcctatgtgt
cgcctactgttgacttttgcaacaccctgttaagtttctccagccttctg
ctcagcacccaatggcttcctttgtgtctttatgggcttcagtttctgcc
tcccttgtcgctgattcttgttcctgcccctctgcctccccttcgcttac
tgaatggatgtttaaaacaaaacaaacaaccaaaagaaaaaacaaaacaa
aacaaaagcaacagtttagatttgtgtgatcatcttatctgtaataatga
aggtccgcaggtcttgattgaatgctaaggctgcacctcggtctagggag
gtttgtctgctattcatgaactgcttaagatgctttcttgtagtttgtga
aatgagcagaacgctttgatttggtttcttcctacagctccattttcaat
ccggcagcactcattactctgcgtacaaaacgattgaacaccagattgca
attcaggtaggaggccaagagattccgaagctcgaattaccaatgtgtat
agggtctcttgtgtctttttattctatgcctccccccacccagttgatgt
tgatgatgatgctaatgatgagggtgatgatgatggtgatggtggtg
gaattctttaattatggagtctgctccttaagtcaaactgcattcgatct
aattagtaagcttagatctcaccttcgtactgaactttaaactcgctgaa
gccaattaagaactatttaaatgaatattaaaaggattcctgtgatcatt
tctgacatgagagaaaacatgcttttcagggggaaaaaaaagggggttta
cacagcatgcctgcatctcacaaaatatttgaattgagccttgtatttaa
tccatgcctcccattctgaaactctgccatccagtgcatttcctaagctc
tttcacgaccaggacccttctttggtcccatctgtcctgagctccgtttt
aagtgcactcagagcgatctgttttcagtaacttattaagaggaactgca
tggcacacaccctctgcctccatttggataaaccactggtttaagcacat
gcagtttcatatccatggaagccggaattaaaagggaaaatcttagcaat
ttcctttttgataaagcgaagcaaaccgagttcaggtaaatgcatattct
ttctaagtccatgcctcgaaataggtcttggtttggttttgtttgtttgt
ttgtttgtttgtttatttgcttgtttttctttttttcttttagtaactta
ttgttttcttatgaaatcaagtgttcccatgaaatgctgttacaattaac
accactaaatgtgtgaggtcacactcaggaaattgtcacagtctaatcat
accaatgagccacttaactcatgtttactaattcaatttatcttcatttc
gagctgtgtggactgatcgactgccatcattagaaaataacaaaactcaa
cactggaggaagacacagacctactcatgccgtggcttctcccaagacac
acaccgctgcctacactggagtgcctgcaagtgagggactgactccttgg
caagagactaacagtcatgctttggaagccaagagtcagctgtatcactg
aagtgacaacagaggacaaagaaatgtcctctatagaatcataccctaag
ggctagtcagcagcattctatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_55828967_55829713
seq2: B6Ng01-145I03.b_42_788

seq1  GAATTCCGTGGACACATTTGTTTTCCCAGAAATAGATTTGTGTCTGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGTGGACACATTTGTTTTCCCAGAAATAGATTTGTGTCTGAGAG  50

seq1  CCAGGATTCAGTTGTTAGAGATGTAGGGGGCGGGGCTTCTACTTGATCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGATTCAGTTGTTAGAGATGTAGGGGGCGGGGCTTCTACTTGATCCC  100

seq1  TGCTAGTGGCTCCTTACAGCCCTCTCTGCCTTCAGTCTCCGCCTATGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGTGGCTCCTTACAGCCCTCTCTGCCTTCAGTCTCCGCCTATGTGT  150

seq1  CGCCTACTGTTGACTTTTGCAACACCCTGTTAAGTTTCTCCAGCCTTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTACTGTTGACTTTTGCAACACCCTGTTAAGTTTCTCCAGCCTTCTG  200

seq1  CTCAGCACCCAATGGCTTCCTTTGTGTCTTTATGGGCTTCAGTTTCTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCACCCAATGGCTTCCTTTGTGTCTTTATGGGCTTCAGTTTCTGCC  250

seq1  TCCCTTGTCGCTGATTCTTGTTCCTGCCCCTCTGCCTCCCCTTCGCTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGTCGCTGATTCTTGTTCCTGCCCCTCTGCCTCCCCTTCGCTTAC  300

seq1  TGAATGGATGTTTAAAACAAAACAAACAACCAAAAGAAAAAACAAAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGATGTTTAAAACAAAACAAACAACCAAAAGAAAAAACAAAACAA  350

seq1  AACAAAAGCAACAGTTTAGATTTGTGTGATCATCTTATCTGTAATAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAGCAACAGTTTAGATTTGTGTGATCATCTTATCTGTAATAATGA  400

seq1  AGGTCCGCAGGTCTTGATTGAATGCTAAGGCTGCACCTCGGTCTAGGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCGCAGGTCTTGATTGAATGCTAAGGCTGCACCTCGGTCTAGGGAG  450

seq1  GTTTGTCTGCTATTCATGAACTGCTTAAGATGCTTTCTTGTAGTTTGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTCTGCTATTCATGAACTGCTTAAGATGCTTTCTTGTAGTTTGTGA  500

seq1  AATGAGCAGAACGCTTTGATTTGGTTTCTTCCTACAGCTCCATTTTCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCAGAACGCTTTGATTTGGTTTCTTCCTACAGCTCCATTTTCAAT  550

seq1  CCGGCAGCACTCATTACTCTGCGTACAAAACGATTGAACACCAGATTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCAGCACTCATTACTCTGCGTACAAAACGATTGAACACCAGATTGCA  600

seq1  ATTCAGGTAGGAGGCCAAGAGATTCCGAAGCTCGAATTACCAATGTGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGTAGGAGGCCAAGAGATTCCGAAGCTCGAATTACCAATGTGTAT  650

seq1  AGGGTCTCTTGTGTCTTTTTATTCTATGCCTCCCCCCACCCAGTTGATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTCTTGTGTCTTTTTATTCTATGCCTCCCCCCACCCAGTTGATGT  700

seq1  TGATGATGATGCTAATGATGAGGGTGATGATGATGGTGATGGTGGTG  747
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATGATGCTAATGATGAGGGTGATGATGATGGTGATGGTGGTG  747

seq1: chr19_55957645_55958736
seq2: B6Ng01-145I03.g_66_1138 (reverse)

seq1  TGATAGAATGCCCTGCTTGGACTGGCCCTTAGTGTTGTGATTTCTATAGA  50
      ||||||||||  |||||  |||| |||||||| | | ||| |||||||||
seq2  TGATAGAATG--CTGCT--GACTAGCCCTTAG-GGTATGA-TTCTATAGA  44

seq1  -GACATTTCTTTTGTCCCTCCTGGTGTGTCCACTTCAGTGATTACAGCTG  99
       |||||||| |||||||   ||| |||   ||||||||||| ||||||||
seq2  GGACATTTC-TTTGTCC--TCTGTTGT---CACTTCAGTGA-TACAGCTG  87

seq1  AACTCTTTTGCTTCCAAAGCCATGACTTGTTAGTCCTTCTTGCCAGGGAG  149
       |||| || |||||||||| |||||| ||||||||  |||||||| ||||
seq2  -ACTC-TTGGCTTCCAAAG-CATGAC-TGTTAGTC--TCTTGCCAAGGAG  131

seq1  TCAGTCCCTCACTTGCAGGCACTCCCAGTGTAGGCAGCGGTGTGTGGTCT  199
      ||||||||||||||||||||||| ||||||||||||||||||||| ||||
seq2  TCAGTCCCTCACTTGCAGGCACT-CCAGTGTAGGCAGCGGTGTGT-GTCT  179

seq1  TGGGAGAAGCCACGGCATGAGTAGGTCTGTGTCTTCCTCCAGTGTTGAGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGAAGCCACGGCATGAGTAGGTCTGTGTCTTCCTCCAGTGTTGAGT  229

seq1  TTTGTTA-TTTCTAATGATGGCAGTCGATCAGTCCACACAGCTCGAAATG  298
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTATTTTCTAATGATGGCAGTCGATCAGTCCACACAGCTCGAAATG  279

seq1  AAGATAAATTGAATTAGTAAACATGAGTTAAGTGGCTCATTGGTATGATT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAATTGAATTAGTAAACATGAGTTAAGTGGCTCATTGGTATGATT  329

seq1  AGACTGTGACAATTTCCTGAGTGTGACCTCACACATTTAGTGGTGTTAAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTGACAATTTCCTGAGTGTGACCTCACACATTTAGTGGTGTTAAT  379

seq1  TGTAACAGCATTTCATGGGAACACTTGATTTCATAAGAAAACAATAAGTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACAGCATTTCATGGGAACACTTGATTTCATAAGAAAACAATAAGTT  429

seq1  ACTAAAAGAAAAAAAGAAAAACAAGCAAATAAACAAACAAACAAACAAAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAGAAAAAAAGAAAAACAAGCAAATAAACAAACAAACAAACAAAC  479

seq1  AAACAAAACCAAACCAAGACCTATTTCGAGGCATGGACTTAGAAAGAATA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACCAAACCAAGACCTATTTCGAGGCATGGACTTAGAAAGAATA  529

seq1  TGCATTTACCTGAACTCGGTTTGCTTCGCTTTATCAAAAAGGAAATTGCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTACCTGAACTCGGTTTGCTTCGCTTTATCAAAAAGGAAATTGCT  579

seq1  AAGATTTTCCCTTTTAATTCCGGCTTCCATGGATATGAAACTGCATGTGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTTCCCTTTTAATTCCGGCTTCCATGGATATGAAACTGCATGTGC  629

seq1  TTAAACCAGTGGTTTATCCAAATGGAGGCAGAGGGTGTGTGCCATGCAGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACCAGTGGTTTATCCAAATGGAGGCAGAGGGTGTGTGCCATGCAGT  679

seq1  TCCTCTTAATAAGTTACTGAAAACAGATCGCTCTGAGTGCACTTAAAACG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTAATAAGTTACTGAAAACAGATCGCTCTGAGTGCACTTAAAACG  729

seq1  GAGCTCAGGACAGATGGGACCAAAGAAGGGTCCTGGTCGTGAAAGAGCTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCAGGACAGATGGGACCAAAGAAGGGTCCTGGTCGTGAAAGAGCTT  779

seq1  AGGAAATGCACTGGATGGCAGAGTTTCAGAATGGGAGGCATGGATTAAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATGCACTGGATGGCAGAGTTTCAGAATGGGAGGCATGGATTAAAT  829

seq1  ACAAGGCTCAATTCAAATATTTTGTGAGATGCAGGCATGCTGTGTAAACC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGCTCAATTCAAATATTTTGTGAGATGCAGGCATGCTGTGTAAACC  879

seq1  CCCTTTTTTTTCCCCCTGAAAAGCATGTTTTCTCTCATGTCAGAAATGAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTTTTTCCCCCTGAAAAGCATGTTTTCTCTCATGTCAGAAATGAT  929

seq1  CACAGGAATCCTTTTAATATTCATTTAAATAGTTCTTAATTGGCTTCAGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAATCCTTTTAATATTCATTTAAATAGTTCTTAATTGGCTTCAGC  979

seq1  GAGTTTAAAGTTCAGTACGAAGGTGAGATCTAAGCTTACTAATTAGATCG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTAAAGTTCAGTACGAAGGTGAGATCTAAGCTTACTAATTAGATCG  1029

seq1  AATGCAGTTTGACTTAAGGAGCAGACTCCATAATTAAAGAATTC  1092
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGTTTGACTTAAGGAGCAGACTCCATAATTAAAGAATTC  1073