BAC Information

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BAC

Clone NameB6Ng01-149J24
Chromosome19 (Build37)
Map Location 38,312,402 - 38,424,420
singlet/doubletdoublet
Overlap geneLgi1
Upstream geneIde, LOC100043010, Kif11, EG667490, LOC631069, Hhex, Exoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281, Fer1l3, Cep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik
Downstream geneTmem20, LOC100042483, Plce1, EG667587, Noc3l, Tbc1d12, Hells, LOC209753, Cyp2c55, LOC100042507, Cyp2c65, LOC668278, Cyp2c66, Cyp2c29
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149J24.bB6Ng01-149J24.g
ACCDH945913DH945914
length7951,096
definitionDH945913|Mus musculus domesticus DNA, BAC clone: B6Ng01-149J24, 5' end.DH945914|Mus musculus domesticus DNA, BAC clone: B6Ng01-149J24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,312,402 - 38,313,196)(38,423,324 - 38,424,420)
sequence
gaattcttagaagtgtatgggtaggaggagctatggatacaagtagctat
gggtaggcgtggctatatgtgggagtggttatgtgtgggcgtggttatgg
gctatgagtaggagtggcaggaagtcagcccactagccaaatctgtagtc
tgtcctcaccctctgtgcttctagggaccagcctattgtgactgcagtta
ttgtttatccttgcccaagacctagaaaggccaagtgcctgccttcccag
gcgaagaagagaagagccaacccttctcaaatcagctctccctaccccat
ggtcagtgcccttctgaatctccctatctgctaagggaagcctgaaataa
cagggttgaaaccacaaagacctaaaaggctttacaaatgcaagtgactg
ggagggttggcacattagtgtgaccgtgtaaacagatcagctcttccctc
ggaactaatttgattagaaaactgcaaagcaggagatcttaatggaagag
gaaaggcccagagcagggtgggggtgatggaacagctgcgtcaatatcac
ctgcctcacagctaagtcctggacccaggctgaatgaagtgcaactctgt
tccaaaatccacggatctcaccaggaggctggcactcaccggggcaaggc
tgggaaccatctgcccaagttggagccatgccccaggggacagacagcag
aggaaggagcagagagtctggggacagtggtacaggcaggaggggaagtg
ggagatggagaacagaattagcccacagaacttgggggggggggg
gaattcccatcccccactgccaagtgaaacagtagggagctgtgactctt
acctgtaaccccaaatgctgacactctgtgacctcctaaagtcacgatgc
tgctaagtcttgaaccacgactgacatcccattcagttagtactgcctag
caatgcaaaatctacagctgtcatcttaaagggaataaaagacagtttat
tttggagccatttgaaatgatcatgcccatgaacagatgtagactacccc
aaatctcatgttccaatgtagaagccgtttcatgaagtcttcctagtttt
gcagaacaaagaaagacataagtcaaggcaagtttaaactatattggtgg
ttacatcagagaggtggttacagcaagatgggggagacttttctatacac
ccaagatgctatcggatgacattcttagctttgggactgaccgaagactg
tgagtctgcaaaggtttttaatctattatgttaaaggccttgcagagatc
agcaaggaatgactgctccagagggctagaactagcccaacagaaggtag
ttagcctctggcccagaaacattccagtctccctactgtactgaaattct
aatcactggtccatcggtctctatagacataacttttcaggagtgtccag
tcatagtcctagatgagcttccagaagtccctgtgtttgaaagagacatt
aactgatcaccccatcttatgcagagagggacttgaactcgtagccattc
agttctgggaccacccactgctcacctcatttctgttcatcccaggctcc
ctttcacaatctccaggttttctttgtccaacccgcagactacagcccta
gggtatatttgaaacaaaaaatatctttgcagtcttccgattaacacgat
ctgaagaaggtcaattacaaaatcttctgttaagaggtaattagttaaat
gaactaagaaaggtaaaatacagcttgatgttgtatagtttagtgccctt
acggaaccattcgacgcagcgggagttagttagccacagaacaaagatga
gtgacgtctgtttgggtggatggtaggcctctttacctggggaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_38312402_38313196
seq2: B6Ng01-149J24.b_50_844

seq1  GAATTCTTAGAAGTGTATGGGTAGGAGGAGCTATGGATACAAGTAGCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGAAGTGTATGGGTAGGAGGAGCTATGGATACAAGTAGCTAT  50

seq1  GGGTAGGCGTGGCTATATGTGGGAGTGGTTATGTGTGGGCGTGGTTATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGGCGTGGCTATATGTGGGAGTGGTTATGTGTGGGCGTGGTTATGG  100

seq1  GCTATGAGTAGGAGTGGCAGGAAGTCAGCCCACTAGCCAAATCTGTAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGAGTAGGAGTGGCAGGAAGTCAGCCCACTAGCCAAATCTGTAGTC  150

seq1  TGTCCTCACCCTCTGTGCTTCTAGGGACCAGCCTATTGTGACTGCAGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCACCCTCTGTGCTTCTAGGGACCAGCCTATTGTGACTGCAGTTA  200

seq1  TTGTTTATCCTTGCCCAAGACCTAGAAAGGCCAAGTGCCTGCCTTCCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTATCCTTGCCCAAGACCTAGAAAGGCCAAGTGCCTGCCTTCCCAG  250

seq1  GCGAAGAAGAGAAGAGCCAACCCTTCTCAAATCAGCTCTCCCTACCCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAAGAAGAGAAGAGCCAACCCTTCTCAAATCAGCTCTCCCTACCCCAT  300

seq1  GGTCAGTGCCCTTCTGAATCTCCCTATCTGCTAAGGGAAGCCTGAAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGTGCCCTTCTGAATCTCCCTATCTGCTAAGGGAAGCCTGAAATAA  350

seq1  CAGGGTTGAAACCACAAAGACCTAAAAGGCTTTACAAATGCAAGTGACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTGAAACCACAAAGACCTAAAAGGCTTTACAAATGCAAGTGACTG  400

seq1  GGAGGGTTGGCACATTAGTGTGACCGTGTAAACAGATCAGCTCTTCCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGTTGGCACATTAGTGTGACCGTGTAAACAGATCAGCTCTTCCCTC  450

seq1  GGAACTAATTTGATTAGAAAACTGCAAAGCAGGAGATCTTAATGGAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTAATTTGATTAGAAAACTGCAAAGCAGGAGATCTTAATGGAAGAG  500

seq1  GAAAGGCCCAGAGCAGGGTGGGGGTGATGGAACAGCTGCGTCAATATCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCCCAGAGCAGGGTGGGGGTGATGGAACAGCTGCGTCAATATCAC  550

seq1  CTGCCTCACAGCTAAGTCCTGGACCCAGGCTGAATGAAGTGCAACTCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCACAGCTAAGTCCTGGACCCAGGCTGAATGAAGTGCAACTCTGT  600

seq1  TCCAAAATCCACGGATCTCACCAGGAGGCTGGCACTCACCGGGGCAAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAATCCACGGATCTCACCAGGAGGCTGGCACTCACCGGGGCAAGGC  650

seq1  TGGGAACCATCTGCCCAAGTTGGAGCCATGCCCCAGGGGACAGACAGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAACCATCTGCCCAAGTTGGAGCCATGCCCCAGGGGACAGACAGCAG  700

seq1  AGGAAGGAGCAGAGAGTCTGGGGACAGTGGTACAGGCAGGAGGGGAAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAGCAGAGAGTCTGGGGACAGTGGTACAGGCAGGAGGGGAAGTG  750

seq1  GGAGATGGAGAACAGAATTAGCCCACAGAACTTGGGGGGGGGGGG  795
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGGAGAACAGAATTAGCCCACAGAACTTGGGGGGGGGGGG  795

seq1: chr19_38423324_38424420
seq2: B6Ng01-149J24.g_68_1163 (reverse)

seq1  TCTTCCCCAGGT-AAGAGGCTAACCATCCACACAAACAGACGTCACCTCA  49
      |||||||||||| |||||||  ||||||||| ||||||||||||| ||||
seq2  TCTTCCCCAGGTAAAGAGGCCTACCATCCACCCAAACAGACGTCA-CTCA  49

seq1  TCTTTGTTCTGT-GCTTACT-ACTCCCGCTGGCGGTCG-ATGGTTCCGTA  96
      |||||||||||| ||| ||| ||||||||||   |||| |||||||||||
seq2  TCTTTGTTCTGTGGCTAACTAACTCCCGCTG--CGTCGAATGGTTCCGTA  97

seq1  AGGGCCACTAAACTATTACACATCAAGCTGTATTTTTACCTTTC-TAGTT  145
      |||| |||||||||||   ||||||||||||| ||||||||||| |||||
seq2  AGGG-CACTAAACTATACAACATCAAGCTGTA-TTTTACCTTTCTTAGTT  145

seq1  CATTTAACTAATTACCTCTTAACAGAAGATTTTTGTAATTGACCTTCTTC  195
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CATTTAACTAATTACCTCTTAACAGAAGA-TTTTGTAATTGACCTTCTTC  194

seq1  AGATCGTTGTTAATCGGAAGACTGCAAAGATATTTTTTGTTTC-AATATA  244
      |||||| |||||||||||||||||||||||||||||||||||| ||||||
seq2  AGATCG-TGTTAATCGGAAGACTGCAAAGATATTTTTTGTTTCAAATATA  243

seq1  CCCTAGGGCTGTAGTCTGCGGGTTGGACAAAGGAAACCTGGAGATTGTGA  294
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CCCTAGGGCTGTAGTCTGCGGGTTGGACAAAGAAAACCTGGAGATTGTGA  293

seq1  AAGGGAGCCTGGGATGAACAGAAATGAGGTGAGCAGTGGGTGGTCCCAGA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGCCTGGGATGAACAGAAATGAGGTGAGCAGTGGGTGGTCCCAGA  343

seq1  ACTGAATGGCTACGAGTTCAAGTCCCTCTCTGCATAAGATGGGGTGATCA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATGGCTACGAGTTCAAGTCCCTCTCTGCATAAGATGGGGTGATCA  393

seq1  GTTAATGTCTCTTTCAAACACAGGGACTTCTGGAAGCTCATCTAGGACTA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGTCTCTTTCAAACACAGGGACTTCTGGAAGCTCATCTAGGACTA  443

seq1  TGACTGGACACTCCTGAAAAGTTATGTCTATAGAGACCGATGGACCAGTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGACACTCCTGAAAAGTTATGTCTATAGAGACCGATGGACCAGTG  493

seq1  ATTAGAATTTCAGTACAGTAGGGAGACTGGAATGTTTCTGGGCCAGAGGC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAATTTCAGTACAGTAGGGAGACTGGAATGTTTCTGGGCCAGAGGC  543

seq1  TAACTACCTTCTGTTGGGCTAGTTCTAGCCCTCTGGAGCAGTCATTCCTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTACCTTCTGTTGGGCTAGTTCTAGCCCTCTGGAGCAGTCATTCCTT  593

seq1  GCTGATCTCTGCAAGGCCTTTAACATAATAGATTAAAAACCTTTGCAGAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATCTCTGCAAGGCCTTTAACATAATAGATTAAAAACCTTTGCAGAC  643

seq1  TCACAGTCTTCGGTCAGTCCCAAAGCTAAGAATGTCATCCGATAGCATCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTCTTCGGTCAGTCCCAAAGCTAAGAATGTCATCCGATAGCATCT  693

seq1  TGGGTGTATAGAAAAGTCTCCCCCATCTTGCTGTAACCACCTCTCTGATG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTATAGAAAAGTCTCCCCCATCTTGCTGTAACCACCTCTCTGATG  743

seq1  TAACCACCAATATAGTTTAAACTTGCCTTGACTTATGTCTTTCTTTGTTC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCACCAATATAGTTTAAACTTGCCTTGACTTATGTCTTTCTTTGTTC  793

seq1  TGCAAAACTAGGAAGACTTCATGAAACGGCTTCTACATTGGAACATGAGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAACTAGGAAGACTTCATGAAACGGCTTCTACATTGGAACATGAGA  843

seq1  TTTGGGGTAGTCTACATCTGTTCATGGGCATGATCATTTCAAATGGCTCC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGTAGTCTACATCTGTTCATGGGCATGATCATTTCAAATGGCTCC  893

seq1  AAAATAAACTGTCTTTTATTCCCTTTAAGATGACAGCTGTAGATTTTGCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAACTGTCTTTTATTCCCTTTAAGATGACAGCTGTAGATTTTGCA  943

seq1  TTGCTAGGCAGTACTAACTGAATGGGATGTCAGTCGTGGTTCAAGACTTA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAGGCAGTACTAACTGAATGGGATGTCAGTCGTGGTTCAAGACTTA  993

seq1  GCAGCATCGTGACTTTAGGAGGTCACAGAGTGTCAGCATTTGGGGTTACA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATCGTGACTTTAGGAGGTCACAGAGTGTCAGCATTTGGGGTTACA  1043

seq1  GGTAAGAGTCACAGCTCCCTACTGTTTCACTTGGCAGTGGGGGATGGGAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGAGTCACAGCTCCCTACTGTTTCACTTGGCAGTGGGGGATGGGAA  1093

seq1  TTC  1097
      |||
seq2  TTC  1096