BAC Information

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BAC

Clone NameB6Ng01-151K22
Chromosome19 (Build37)
Map Location 26,620,950 - 26,830,632
singlet/doubletdoublet
Overlap geneSmarca2
Upstream geneDmrt1, Dmrt3, Dmrt2, EG667806, 1700048O14Rik, LOC100041846, LOC100041857
Downstream geneGm815, LOC100042576, Vldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151K22.bB6Ng01-151K22.g
ACCDH947442DH947443
length1,2161,157
definitionDH947442|Mus musculus domesticus DNA, BAC clone: B6Ng01-151K22, 5' end.DH947443|Mus musculus domesticus DNA, BAC clone: B6Ng01-151K22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,620,950 - 26,622,187)(26,829,453 - 26,830,632)
sequence
gaattcttttcagctatattcccacaatgtaggggcatctaacgatatgt
aaacaccaaagaaaccagggtctttatctgtctcattcacggctgtggtc
cctgcctactaccatatggcacactacaatgtcccttgagagatgctaaa
tcaattggaaagtgattttcactttctctgaaattgggagaattattttc
cacgggttaaccttttaaaagaatcatctctacaactttgttcctcttcc
attgcctggtaaatgggacctgagacatcttctgccaccgagtgtgtaat
ttgtttacctgtgatgacacgcaatgtaaaacccatttctccaggatatg
tgttcagtgacttcctttgtaggtcaatactttaacatccattctgctga
agtttcagatatcctgaactgcccttttctaaccaaggctatgaagccaa
aaaaaccacatcacaaatgggaacttgcaacctatcgatgatcaagataa
tcatttccttatactagcaacattgaaaacatctgtaaattgtatggaaa
ctctgatctccaaaactgtgcctgcttaagaaatgtcctgtaaccagaaa
ctgttttagacagaattcaagtctctgtgtatttcagtaactgccatacc
tacagagagcctggctggtgtttcccactctcttttcaatggtcagtttg
actctgagtgggcttctaagacacatgctgaatcatctcagagttttaag
aatagcgtcagtacctgggctccctgaggtgtcacagcgcttgagagcta
gctcataaactgactctcttcttgagatctgctctgaggacctgggttgc
tcttggatcgtaattagtcttcccaacctgtcaggtttgctcttaacaaa
caaaattatctcaaggggagaaaaagctgtattaatcaatcctgaaggtt
tctattttttccccattagatacagcagagtgactttaatgtaaaaggac
atttcagaccacaaaggcagtgactttagagggatatttctgatgcattt
ggcactttaaaatcctgctgctttgctcccccccctcccccaattaaagc
ctctctaagtctagcatggtatttctggaaatcactctactgcattcctg
ttatggccacagatcgcctagcgtactctctgatgtgaactgtggtttta
gacattccaagtgtag
gaattcttgtgggcaaggttcaaatgggcagtacaagagcagaatatgcc
cggggagggtctaagtgtcactcagagaacaaagggggatgtttctacct
gaagaaggtggccctgggctggggatgcccatttagaactattttcaaag
gacatctcttgaaacaagactggattcattctctgactagtttgtagact
agctaaaaatcagtggaaaggatttcaatgtgggaaagaacaaccatatc
gaagacagtcttgcagcgtcaagaagttcctccagaaaccatgccctaat
gtgggatccacatccacaggctggaggactttctgtcaccagggctgctg
ctgcacctgagtcacaggacaccacaccaggcagagccaaagcccagaac
ctctgcctttaaggctgtctctaggaaccttttcctgagacctagaagac
ttgcagggtaggtctccacctattccccatggcatctcatggcgatttta
aagagtacaggtgcaacagaggaggaatcctttacaaagaaacggagtgc
ctcgggttaaatattatagaaggtgagagggtggttaacagccttcaaaa
caagcagagaacaaaacatgtccacgaagtcaaaacaaagtatggcttga
gataaagttttctatctgggacaaataacatggtaggaactagtagccgt
agtcctgtactgcctaatagccattggttcgtgaatcacacaatgtgatc
ggctcttccgggtcacattttaaaaccgtatcatgctttaaaatataaag
cagtaaatatacacaaattatcttaagtctttatggaaatatcaagccac
atctgtccccgaatcgtgcaaggatttttaaacaactgctcctgagggct
tattcttcttatctatctgttaagtagagatggaggtctgacttaatcta
ctctcagctacacagcaatgtaaccctgactaacactggacggcatgtta
gatgggtttcgtacaaggtggcctccttctttaagtagcctgaagtactg
tttaaatactgacgctaatgctgaggaaccttcaacacagcaatgatgtc
attcttccagtagcttttttttcctaaaatgaaacaaaaacacaacctgt
tcctaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_26620950_26622187
seq2: B6Ng01-151K22.b_43_1258

seq1  GAATTCTTTTCAGCTATATTCCCACAATGTAGGGGCATCTAACGATATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCAGCTATATTCCCACAATGTAGGGGCATCTAACGATATGT  50

seq1  AAACACCAAAGAAACCAGGGTCTTTATCTGTCTCATTCACGGCTGTGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCAAAGAAACCAGGGTCTTTATCTGTCTCATTCACGGCTGTGGTC  100

seq1  CCTGCCTACTACCATATGGCACACTACAATGTCCCTTGAGAGATGCTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTACTACCATATGGCACACTACAATGTCCCTTGAGAGATGCTAAA  150

seq1  TCAATTGGAAAGTGATTTTCACTTTCTCTGAAATTGGGAGAATTATTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTGGAAAGTGATTTTCACTTTCTCTGAAATTGGGAGAATTATTTTC  200

seq1  CACGGGTTAACCTTTTAAAAGAATCATCTCTACAACTTTGTTCCTCTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGGTTAACCTTTTAAAAGAATCATCTCTACAACTTTGTTCCTCTTCC  250

seq1  ATTGCCTGGTAAATGGGACCTGAGACATCTTCTGCCACCGAGTGTGTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCTGGTAAATGGGACCTGAGACATCTTCTGCCACCGAGTGTGTAAT  300

seq1  TTGTTTACCTGTGATGACACGCAATGTAAAACCCATTTCTCCAGGATATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTACCTGTGATGACACGCAATGTAAAACCCATTTCTCCAGGATATG  350

seq1  TGTTCAGTGACTTCCTTTGTAGGTCAATACTTTAACATCCATTCTGCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGTGACTTCCTTTGTAGGTCAATACTTTAACATCCATTCTGCTGA  400

seq1  AGTTTCAGATATCCTGAACTGCCCTTTTCTAACCAAGGCTATGAAGCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAGATATCCTGAACTGCCCTTTTCTAACCAAGGCTATGAAGCCAA  450

seq1  AAAAACCACATCACAAATGGGAACTTGCAACCTATCGATGATCAAGATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCACATCACAAATGGGAACTTGCAACCTATCGATGATCAAGATAA  500

seq1  TCATTTCCTTATACTAGCAACATTGAAAACATCTGTAAATTGTATGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCCTTATACTAGCAACATTGAAAACATCTGTAAATTGTATGGAAA  550

seq1  CTCTGATCTCCAAAACTGTGCCTGCTTAAGAAATGTCCTGTAACCAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATCTCCAAAACTGTGCCTGCTTAAGAAATGTCCTGTAACCAGAAA  600

seq1  CTGTTTTAGACAGAATTCAAGTCTCTGTGTATTTCAGTAACTGCCATACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTAGACAGAATTCAAGTCTCTGTGTATTTCAGTAACTGCCATACC  650

seq1  TACAGAGAGCCTGGCTGGTGTTTCCCACTCTCTTTTCAATGGTCAGTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGAGCCTGGCTGGTGTTTCCCACTCTCTTTTCAATGGTCAGTTTG  700

seq1  ACTCTGAGTGGGCTTCTAAGACACATGCTGAATCATCTCAGAGTTTTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAGTGGGCTTCTAAGACACATGCTGAATCATCTCAGAGTTTTAAG  750

seq1  AATAGCGTCAGTACCTGGGCTCCCTGAGGTGTCACAGCGCTTGAGAGCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCGTCAGTACCTGGGCTCCCTGAGGTGTCACAGCGCTTGAGAGCTA  800

seq1  GCTCATAAACTGACTCTCTTCTTGAGATCTGCTCTGAGGACCTGGGTTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATAAACTGACTCTCTTCTTGAGATCTGCTCTGAGGACCTGGGTTGC  850

seq1  TCTTGGATCGTAATTAGTCTTCCCAACCTGTCAGGTTTGCTCTTAACAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGATCGTAATTAGTCTTCCCAACCTGTCAGGTTTGCTCTTAACAAA  900

seq1  CAAAATTATCTCAAGGGGAGAAAAAGCTGTATTAATCAATCCTGAAGGGT  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CAAAATTATCTCAAGGGGAGAAAAAGCTGTATTAATCAATCCTGAA-GGT  949

seq1  TTCTATTTTTTCCCCCATTAGGAATACAGCAGAGTGACTTTAATGTTAAA  1000
      ||||||||||| |||||||||  |||||||||||||||||||||| ||||
seq2  TTCTATTTTTT-CCCCATTAG--ATACAGCAGAGTGACTTTAATG-TAAA  995

seq1  AGGACATTTCAGACCACAAAAGGCCAGTGACTTTAGAGGGATATTTCCTG  1050
      ||||||||||||||||||||  | |||||||||||||||||||||| |||
seq2  AGGACATTTCAGACCACAAA--GGCAGTGACTTTAGAGGGATATTT-CTG  1042

seq1  ATGCATTTGGCACTTTTAAAATCTCTGCTGCTTTGGCTCCCCCCCCCTCC  1100
      ||||||||||||| ||||||||| |||||||||| ||| |||||||||||
seq2  ATGCATTTGGCAC-TTTAAAATC-CTGCTGCTTT-GCT-CCCCCCCCTCC  1088

seq1  CCCAATATAAAGCCTCTCCTAGTTTCTAGCATGGGTATTTCTGAAATTCA  1150
      |||||| |||||||||||  ||  |||||||| |||||||||| || |||
seq2  CCCAAT-TAAAGCCTCTCTAAG--TCTAGCAT-GGTATTTCTGGAAATCA  1134

seq1  -TCTACTGCCATTTTTCTGTATTGTCCAACAGATTGGCCCTA--GTACCT  1197
       ||||||||    || ||||  || || |||||| |  ||||  ||||  
seq2  CTCTACTGC---ATTCCTGTTATGGCC-ACAGATCG--CCTAGCGTACTC  1178

seq1  TCTGATGTGTGACAGCTGT-GTTTTAACCATTCCAAGTGTAG  1238
      |||||||||    | |||| ||||||  ||||||||||||||
seq2  TCTGATGTG----AACTGTGGTTTTAGACATTCCAAGTGTAG  1216

seq1: chr19_26829453_26830632
seq2: B6Ng01-151K22.g_68_1224 (reverse)

seq1  ATTAGGAGGGCCTTAATTAGATACAGTGTTGTATTTTTGGTTCATTTTAG  50
                     |||||  |||| ||||| |||||| ||||||||||
seq2  ---------------ATTAGGAACAG-GTTGTGTTTTTGTTTCATTTTAG  34

seq1  AGAAAAAAAAAAGCTACTGGAAGGATGTACATC-TTGCTGTGTTG-AGGT  98
          ||||||||||||||||||| ||| ||||| ||||||||||| ||||
seq2  ---GAAAAAAAAGCTACTGGAAGAATG-ACATCATTGCTGTGTTGAAGGT  80

seq1  TCCTCCAGCATTAGCGTCAGTTATTAATACAGTAACTCAGCCTACTTAAA  148
      |||| ||||||||||||||| |||| | ||||||  |||| |||||||||
seq2  TCCT-CAGCATTAGCGTCAG-TATTTAAACAGTACTTCAGGCTACTTAAA  128

seq1  GAAGGAGGGCCACC-TGTACGAAACCCCATCTAACATGCCCGTCCAGTGT  197
      |||||| ||||||| ||||||||| ||||||||||||| |||||||||||
seq2  GAAGGA-GGCCACCTTGTACGAAA-CCCATCTAACATG-CCGTCCAGTGT  175

seq1  TAGTC-GGGTTCCAATGGCTGTGTAGCTGAAGAGTAGATTAAGTCAGACC  246
      ||||| ||||| | || |||||||||||| ||||||||||||||||||||
seq2  TAGTCAGGGTTAC-ATTGCTGTGTAGCTG-AGAGTAGATTAAGTCAGACC  223

seq1  TCCATCTCTACTTAACAGATAGATAAGAAGAATAAGCCCTCAGGAGCAGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTCTACTTAACAGATAGATAAGAAGAATAAGCCCTCAGGAGCAGT  273

seq1  TGTTTAAAAATCCTTGCACGATTCGGGGACAGATGTGGCTTGATATTTCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAAAATCCTTGCACGATTCGGGGACAGATGTGGCTTGATATTTCC  323

seq1  ATAAAGACTTAAGATAATTTGTGTATATTTACTGCTTTATATTTTAAAGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGACTTAAGATAATTTGTGTATATTTACTGCTTTATATTTTAAAGC  373

seq1  ATGATACGGTTTTAAAATGTGACCCGGAAGAGCCGATCACATTGTGTGAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATACGGTTTTAAAATGTGACCCGGAAGAGCCGATCACATTGTGTGAT  423

seq1  TCACGAACCAATGGCTATTAGGCAGTACAGGACTACGGCTACTAGTTCCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGAACCAATGGCTATTAGGCAGTACAGGACTACGGCTACTAGTTCCT  473

seq1  ACCATGTTATTTGTCCCAGATAGAAAACTTTATCTCAAGCCATACTTTGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTTATTTGTCCCAGATAGAAAACTTTATCTCAAGCCATACTTTGT  523

seq1  TTTGACTTCGTGGACATGTTTTGTTCTCTGCTTGTTTTGAAGGCTGTTAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTTCGTGGACATGTTTTGTTCTCTGCTTGTTTTGAAGGCTGTTAA  573

seq1  CCACCCTCTCACCTTCTATAATATTTAACCCGAGGCACTCCGTTTCTTTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCTCTCACCTTCTATAATATTTAACCCGAGGCACTCCGTTTCTTTG  623

seq1  TAAAGGATTCCTCCTCTGTTGCACCTGTACTCTTTAAAATCGCCATGAGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGATTCCTCCTCTGTTGCACCTGTACTCTTTAAAATCGCCATGAGA  673

seq1  TGCCATGGGGAATAGGTGGAGACCTACCCTGCAAGTCTTCTAGGTCTCAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATGGGGAATAGGTGGAGACCTACCCTGCAAGTCTTCTAGGTCTCAG  723

seq1  GAAAAGGTTCCTAGAGACAGCCTTAAAGGCAGAGGTTCTGGGCTTTGGCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGTTCCTAGAGACAGCCTTAAAGGCAGAGGTTCTGGGCTTTGGCT  773

seq1  CTGCCTGGTGTGGTGTCCTGTGACTCAGGTGCAGCAGCAGCCCTGGTGAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGGTGTGGTGTCCTGTGACTCAGGTGCAGCAGCAGCCCTGGTGAC  823

seq1  AGAAAGTCCTCCAGCCTGTGGATGTGGATCCCACATTAGGGCATGGTTTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTCCTCCAGCCTGTGGATGTGGATCCCACATTAGGGCATGGTTTC  873

seq1  TGGAGGAACTTCTTGACGCTGCAAGACTGTCTTCGATATGGTTGTTCTTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAACTTCTTGACGCTGCAAGACTGTCTTCGATATGGTTGTTCTTT  923

seq1  CCCACATTGAAATCCTTTCCACTGATTTTTAGCTAGTCTACAAACTAGTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACATTGAAATCCTTTCCACTGATTTTTAGCTAGTCTACAAACTAGTC  973

seq1  AGAGAATGAATCCAGTCTTGTTTCAAGAGATGTCCTTTGAAAATAGTTCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATGAATCCAGTCTTGTTTCAAGAGATGTCCTTTGAAAATAGTTCT  1023

seq1  AAATGGGCATCCCCAGCCCAGGGCCACCTTCTTCAGGTAGAAACATCCCC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGCATCCCCAGCCCAGGGCCACCTTCTTCAGGTAGAAACATCCCC  1073

seq1  CTTTGTTCTCTGAGTGACACTTAGACCCTCCCCGGGCATATTCTGCTCTT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTCTCTGAGTGACACTTAGACCCTCCCCGGGCATATTCTGCTCTT  1123

seq1  GTACTGCCCATTTGAACCTTGCCCACAAGAATTC  1180
      ||||||||||||||||||||||||||||||||||
seq2  GTACTGCCCATTTGAACCTTGCCCACAAGAATTC  1157