BAC Information

Click to search

BAC

Clone NameB6Ng01-154M15
Chromosome19 (Build37)
Map Location 27,037,525 - 27,169,306
singlet/doubletdoublet
Overlap genenone
Upstream gene1700048O14Rik, LOC100041846, LOC100041857, Smarca2, Gm815
Downstream geneLOC100042576, Vldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868, LOC100042612, Rfx3, LOC666997, LOC433235
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154M15.bB6Ng01-154M15.g
ACCDH949741DH949742
length2331,086
definitionDH949741|Mus musculus domesticus DNA, BAC clone: B6Ng01-154M15, 5' end.DH949742|Mus musculus domesticus DNA, BAC clone: B6Ng01-154M15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,037,525 - 27,037,757)(27,168,206 - 27,169,306)
sequence
tctctgtagaccaggctggtcccgaactcagaaatccgctgagtgaaata
ttgcactcttccactattgctatctcagaacctaagtaacttttatgtct
ttaaatatttgttttatgaacctaagagactaaagatactgcacaaaaat
ttatattctaattgatccttggataatatgtagtgagctgtttttgttgt
tgttgttgttgttgttgttgttgttgttgtttt
gaattcaagccacctatgggcaagtggggaaatggtaaatgtacaaccag
cagagcctggctcaaaaccctctaaagagtcatacccacatacccacata
cccacatacatacccacatactcacatacccacatacctgaggactgagc
aggtcacaaagctccagagagcttgcctgaggggtaaatgagaggcaaag
gcaatacaccgaaggcgacatttcatggctgactcttttgttgtttttgt
tttttgttttttgtttttttgtttttttgtttttgtttttgtttttgttt
ttcaagatagggtttgtcttatagttctggagtcggtgtttctaatactg
tgataaacaccaggaccaaaagcaacttggggaggcaaagggtttctttc
acctctcaggtgacagcctatcatcaaggggagtcaaggcaggaactaaa
ggcaggaacctggaagcaggaactgaagcagaggccatgggggaacgcta
ctcactggcttgctcctcccagttttcagatcctgattacttaaaaaccc
caggactacctgcccaggcatgataccacccccagtgatctgggtccttc
cacatcaatccccaacaaagaaaatgtaccatagacttgcctacaggcct
atcttctggaagcatcttctcaattaatattctctcttcccagacatgta
taggttagtatcaagtagacaaaaaccaaacagcacaatatctttgaatc
taatttattttcaatttttgtttggctcttctatcttgtaaggctataac
ttggggaaaatttctttacccgtaaaacaaaggcattagtgatgtaaaga
acacaggctgttctgcagctaaatgacagatatattgttcatccttgctt
ctagtaatctgtttgtttctattctgtctttataatgtctccattttgcc
ctaattttatttgtgcctttctcttttcccttttaatctggctgagggct
tatcattttttttttcacaacagcatttagcattgctgatctttggtgga
gtttcgtgccagaaccgcaaacctgttctgctcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_27037525_27037757
seq2: B6Ng01-154M15.b_55_287

seq1  TCTCTGTAGACCAGGCTGGTCCCGAACTCAGAAATCCGCTGAGTGAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTAGACCAGGCTGGTCCCGAACTCAGAAATCCGCTGAGTGAAATA  50

seq1  TTGCACTCTTCCACTATTGCTATCTCAGAACCTAAGTAACTTTTATGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACTCTTCCACTATTGCTATCTCAGAACCTAAGTAACTTTTATGTCT  100

seq1  TTAAATATTTGTTTTATGAACCTAAGAGACTAAAGATACTGCACAAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATTTGTTTTATGAACCTAAGAGACTAAAGATACTGCACAAAAAT  150

seq1  TTATATTCTAATTGATCCTTGGATAATATGTAGTGAGCTGTTTTTGTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTCTAATTGATCCTTGGATAATATGTAGTGAGCTGTTTTTGTTGT  200

seq1  TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTT  233
      |||||||||||||||||||||||||||||||||
seq2  TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTT  233

seq1: chr19_27168206_27169306
seq2: B6Ng01-154M15.g_68_1153 (reverse)

seq1  AAAGAGCAGAACAGGTGTTCGCGTACTCGGCACTGAAAACTTCACCAAAG  50
      |||||||||||||||| | || || || |||||   ||||| ||||||||
seq2  AAAGAGCAGAACAGGTTTGCG-GTTCT-GGCAC--GAAACTCCACCAAAG  46

seq1  ATCAGCAATGCTAAATGCTGGTTTTTGAAAAAAAAAAATGATAAGCCCTC  100
      ||||||||||||||||||||  || || ||||||||||||||||||||||
seq2  ATCAGCAATGCTAAATGCTG--TTGTG-AAAAAAAAAATGATAAGCCCTC  93

seq1  AGCCAGATTAAAAAGGGAAAAAGGAGTAAAGGCACAAATAAAATTAGGAG  150
      ||||||||| |||||||||||  ||| ||||||||||||||||||||| |
seq2  AGCCAGATT-AAAAGGGAAAA--GAG-AAAGGCACAAATAAAATTAGG-G  138

seq1  CAAAAATGGAGACATTATAAAGACAGAATAGAAACAAAACAGATTACTAG  200
      | ||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  C-AAAATGGAGACATTATAAAGACAGAATAGAAAC-AAACAGATTACTAG  186

seq1  AAGCAAGGATGAACAAATATATCTGTCATTTAGCTGCAGAACAGCCTGTG  250
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAGCAAGGATGAAC-AATATATCTGTCATTTAGCTGCAGAACAGCCTGTG  235

seq1  TTCTTTACATCACTAATGCCTTTGTTTTACGGGTAAAGAAATTTTCCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTACATCACTAATGCCTTTGTTTTACGGGTAAAGAAATTTTCCCCA  285

seq1  AGTTATAGCCTTACAAGATAGAAGAGCCAAACAAAAATTGAAAATAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATAGCCTTACAAGATAGAAGAGCCAAACAAAAATTGAAAATAAATT  335

seq1  AGATTCAAAGATATTGTGCTGTTTGGTTTTTGTCTACTTGATACTAACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCAAAGATATTGTGCTGTTTGGTTTTTGTCTACTTGATACTAACCT  385

seq1  ATACATGTCTGGGAAGAGAGAATATTAATTGAGAAGATGCTTCCAGAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGTCTGGGAAGAGAGAATATTAATTGAGAAGATGCTTCCAGAAGA  435

seq1  TAGGCCTGTAGGCAAGTCTATGGTACATTTTCTTTGTTGGGGATTGATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCTGTAGGCAAGTCTATGGTACATTTTCTTTGTTGGGGATTGATGT  485

seq1  GGAAGGACCCAGATCACTGGGGGTGGTATCATGCCTGGGCAGGTAGTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGACCCAGATCACTGGGGGTGGTATCATGCCTGGGCAGGTAGTCCT  535

seq1  GGGGTTTTTAAGTAATCAGGATCTGAAAACTGGGAGGAGCAAGCCAGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTTTTAAGTAATCAGGATCTGAAAACTGGGAGGAGCAAGCCAGTGA  585

seq1  GTAGCGTTCCCCCATGGCCTCTGCTTCAGTTCCTGCTTCCAGGTTCCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCGTTCCCCCATGGCCTCTGCTTCAGTTCCTGCTTCCAGGTTCCTGC  635

seq1  CTTTAGTTCCTGCCTTGACTCCCCTTGATGATAGGCTGTCACCTGAGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTTCCTGCCTTGACTCCCCTTGATGATAGGCTGTCACCTGAGAGG  685

seq1  TGAAAGAAACCCTTTGCCTCCCCAAGTTGCTTTTGGTCCTGGTGTTTATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAAACCCTTTGCCTCCCCAAGTTGCTTTTGGTCCTGGTGTTTATC  735

seq1  ACAGTATTAGAAACACCGACTCCAGAACTATAAGACAAACCCTATCTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATTAGAAACACCGACTCCAGAACTATAAGACAAACCCTATCTTGA  785

seq1  AAAACAAAAACAAAAACAAAAACAAAAAAACAAAAAAACAAAAAACAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAACAAAAACAAAAACAAAAAAACAAAAAAACAAAAAACAAAA  835

seq1  AACAAAAACAACAAAAGAGTCAGCCATGAAATGTCGCCTTCGGTGTATTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAACAACAAAAGAGTCAGCCATGAAATGTCGCCTTCGGTGTATTG  885

seq1  CCTTTGCCTCTCATTTACCCCTCAGGCAAGCTCTCTGGAGCTTTGTGACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCCTCTCATTTACCCCTCAGGCAAGCTCTCTGGAGCTTTGTGACC  935

seq1  TGCTCAGTCCTCAGGTATGTGGGTATGTGAGTATGTGGGTATGTATGTGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGTCCTCAGGTATGTGGGTATGTGAGTATGTGGGTATGTATGTGG  985

seq1  GTATGTGGGTATGTGGGTATGACTCTTTAGAGGGTTTTGAGCCAGGCTCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGGGTATGTGGGTATGACTCTTTAGAGGGTTTTGAGCCAGGCTCT  1035

seq1  GCTGGTTGTACATTTACCATTTCCCCACTTGCCCATAGGTGGCTTGAATT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTTGTACATTTACCATTTCCCCACTTGCCCATAGGTGGCTTGAATT  1085

seq1  C  1101
      |
seq2  C  1086