BAC Information

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BAC

Clone NameB6Ng01-161P01
Chromosome19 (Build37)
Map Location 48,012,508 - 48,156,559
singlet/doubletdoublet
Overlap geneGm969
Upstream geneNt5c2, Ina, Pcgf6, LOC100042842, Taf5, Usmg5, Pdcd11, 2810048G17Rik, EG546729, EG240669, EG629389, Neurl, EG329070, Sh3pxd2a, Obfc1, Slk, Col17a1, 6330577E15Rik, D19Ertd652e, LOC677174, Gsto1, Gsto2, BC063749
Downstream geneLOC670576, Sorcs3, LOC100042896
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161P01.bB6Ng01-161P01.g
ACCDH954914DH954915
length387836
definitionDH954914|Mus musculus domesticus DNA, BAC clone: B6Ng01-161P01, 5' end.DH954915|Mus musculus domesticus DNA, BAC clone: B6Ng01-161P01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,012,508 - 48,012,894)(48,155,726 - 48,156,559)
sequence
cagaccgtgactggcagtctgaacggcgggcgattactgataccgcagca
gagatgttattgaaaaagtctcattgttactttcctcattaacctctcca
cctgtcgcgccctgatcccctaacacatgatcaccagctctcacactttc
atcacggccctccagctcattgtcattgccctgtgctctcattgaccccg
tgttaacatcccgcagccccgtctctcgcctgtgttactggacacttcat
cttcagctgcactgatgagggctgtcttctgcatccttcagtaacctgtt
tgtccattagccctctcatctataacctcgacagccctacattcttgcca
tcacttgacatgcagagttcttttttattttggtctt
gaattcaagaatgttgcttattccagccaaagcctgcttgcacagctcct
aggcccaggctctgaataagatctagtcttcgtcctcagctctagctacc
caggactgtgtgtccatgttgctttctatcacagagtctggtccttcatg
gctaatacccagaccattttcatgcaaaagagaaggaaaaaaaaaaagaa
atcacaactcatttttagcaagaaagaagatgccagaggtaattgctttg
caaattactgtaagttataaacggatcaatgattttttattccaaagtca
gaaccaactataattagccatatgcaaatcccagcccaagcctttatggt
gcacaatgaaataggaggcaacctcttcagccatttagactcattcagag
gagaccctgtgtgaactaaaggaagcacaaaggagccaagaaaacccgca
tcttccctttccgcagatgccaggcctagggatgtactccagaggaaagc
ctgtggctctatgcacggtgcaggcctgagtggccacagcataaatggat
ttcagaggtctagattggagctgactttcctttctccttgtgtggtgaaa
ctgagtgaagagctggaaagctgtcaagatttcatttctctgtgaaactg
gtatgtctgtcacctgaatgaggaagaagctgacccagggagaaaagttg
gatctagaaacatcgcaggcgctagctctgggtctacagtacaaaccatg
gagcctggccagcatcctacttcatggctactagactcttcatgcaagga
aacaaagggatcagattgggggggtgggtggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_48012508_48012894
seq2: B6Ng01-161P01.b_54_440

seq1  CAGACCGTGACTGGCAGTCTGAACTGCGGGCGATTACTGATACCGCAGCA  50
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CAGACCGTGACTGGCAGTCTGAACGGCGGGCGATTACTGATACCGCAGCA  50

seq1  GAGATGTTATTGAAAATGTCTCATTGTTACTTTCCTCATTAACCTCTCCA  100
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GAGATGTTATTGAAAAAGTCTCATTGTTACTTTCCTCATTAACCTCTCCA  100

seq1  CCTGTCGCGCCCTGATCCCCTAACACATGATCACCAGCTGTCACACTTTC  150
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCTGTCGCGCCCTGATCCCCTAACACATGATCACCAGCTCTCACACTTTC  150

seq1  ATCACGGCCCTCCAGCTCATTGTCATTGCCCTGTGCTCTCATTGACCCCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACGGCCCTCCAGCTCATTGTCATTGCCCTGTGCTCTCATTGACCCCG  200

seq1  TGTTAACATCCCGCAGCCCCGTCTCTCGCCTGTGTTACTGGACACTTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAACATCCCGCAGCCCCGTCTCTCGCCTGTGTTACTGGACACTTCAT  250

seq1  CTTCAGCTGCACTGATGAGGGCTGACTTCTGCATCCTTCAGTAACCTGTC  300
      |||||||||||||||||||||||| |||||||||||||||||||||||| 
seq2  CTTCAGCTGCACTGATGAGGGCTGTCTTCTGCATCCTTCAGTAACCTGTT  300

seq1  TGTCCATTAGCCCTCTCATCTATAACCTCGACAGCCCTACATCCTTGCCA  350
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGTCCATTAGCCCTCTCATCTATAACCTCGACAGCCCTACATTCTTGCCA  350

seq1  TCACTTGACATGCAGAGTTCTCATTTATCTTGGTCTT  387
      |||||||||||||||||||||  ||||| ||||||||
seq2  TCACTTGACATGCAGAGTTCTTTTTTATTTTGGTCTT  387

seq1: chr19_48155726_48156559
seq2: B6Ng01-161P01.g_68_902 (reverse)

seq1  CCCCCCACCCA-CCCCCCAATCTGATCCCTTTGTTTCCTTGCATGAAGAG  49
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCACCCACCCCCCCAATCTGATCCCTTTGTTTCCTTGCATGAAGAG  50

seq1  TCTAGTAGCCATGAAGTAGGATGCTGGCCAGGCTCCATGGTTTGTACTGT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTAGCCATGAAGTAGGATGCTGGCCAGGCTCCATGGTTTGTACTGT  100

seq1  AGACCCAGAGCTAGCGCCTGCGATGTTTCTAGATCCAACTTTTCTCCCTG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCAGAGCTAGCGCCTGCGATGTTTCTAGATCCAACTTTTCTCCCTG  150

seq1  GGTCAGCTTCTTCCTCATTCAGGTGACAGACATACCAGTTTCACAGAGAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGCTTCTTCCTCATTCAGGTGACAGACATACCAGTTTCACAGAGAA  200

seq1  ATGAAATCTTGACAGCTTTCCAGCTCTTCACTCAGTTTCACCACACAAGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATCTTGACAGCTTTCCAGCTCTTCACTCAGTTTCACCACACAAGG  250

seq1  AGAAAGGAAAGTCAGCTCCAATCTAGACCTCTGAAATCCATTTATGCTGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGAAAGTCAGCTCCAATCTAGACCTCTGAAATCCATTTATGCTGT  300

seq1  GGCCACTCAGGCCTGCACCGTGCATAGAGCCACAGGCTTTCCTCTGGAGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACTCAGGCCTGCACCGTGCATAGAGCCACAGGCTTTCCTCTGGAGT  350

seq1  ACATCCCTAGGCCTGGCATCTGCGGAAAGGGAAGATGCGGGTTTTCTTGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCCTAGGCCTGGCATCTGCGGAAAGGGAAGATGCGGGTTTTCTTGG  400

seq1  CTCCTTTGTGCTTCCTTTAGTTCACACAGGGTCTCCTCTGAATGAGTCTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTGTGCTTCCTTTAGTTCACACAGGGTCTCCTCTGAATGAGTCTA  450

seq1  AATGGCTGAAGAGGTTGCCTCCTATTTCATTGTGCACCATAAAGGCTTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTGAAGAGGTTGCCTCCTATTTCATTGTGCACCATAAAGGCTTGG  500

seq1  GCTGGGATTTGCATATGGCTAATTATAGTTGGTTCTGACTTTGGAATAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGATTTGCATATGGCTAATTATAGTTGGTTCTGACTTTGGAATAAA  550

seq1  AAATCATTGATCCGTTTATAACTTACAGTAATTTGCAAAGCAATTACCTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATTGATCCGTTTATAACTTACAGTAATTTGCAAAGCAATTACCTC  600

seq1  TGGCATCTTCTTTCTTGCTAAAAATGAGTTGTGATTTCTTTTTTTTTTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATCTTCTTTCTTGCTAAAAATGAGTTGTGATTTCTTTTTTTTTTTC  650

seq1  CTTCTCTTTTGCATGAAAATGGTCTGGGTATTAGCCATGAAGGACCAGAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTTTTGCATGAAAATGGTCTGGGTATTAGCCATGAAGGACCAGAC  700

seq1  TCTGTGATAGAAAGCAACATGGACACACAGTCCTGGGTAGCTAGAGCTGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGATAGAAAGCAACATGGACACACAGTCCTGGGTAGCTAGAGCTGA  750

seq1  GGACGAAGACTAGATCTTATTCAGAGCCTGGGCCTAGGAGCTGTGCAAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGAAGACTAGATCTTATTCAGAGCCTGGGCCTAGGAGCTGTGCAAGC  800

seq1  AGGCTTTGGCTGGAATAAGCAACATTCTTGAATTC  834
      |||||||||||||||||||||||||||||||||||
seq2  AGGCTTTGGCTGGAATAAGCAACATTCTTGAATTC  835