BAC Information

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BAC

Clone NameB6Ng01-163D06
Chromosome19 (Build37)
Map Location 55,351,100 - 55,517,292
singlet/doubletdoublet
Overlap geneAcsl5, Zdhhc6, Vti1a
Upstream geneLOC100043004, Gpam, Tectb, Gucy2g
Downstream geneLOC100043479, Tcf7l2, Ppnr, LOC100043484, Habp2, Nrap, Casp7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163D06.bB6Ng01-163D06.g
ACCDH955849DH955850
length1,1851,111
definitionDH955849|Mus musculus domesticus DNA, BAC clone: B6Ng01-163D06, 5' end.DH955850|Mus musculus domesticus DNA, BAC clone: B6Ng01-163D06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,351,100 - 55,352,301)(55,516,169 - 55,517,292)
sequence
gaattctcttactgtccagtgtaagacacaaattggagaaatattgaagg
caaacatgttcttatctaagactccacatcttagaaggcatgctcataga
aacaattatgtgtactcatgagattagataaaaatataaaatatgggaaa
gatctattttcattagttgttaaaacagatgaaagtaataacttctcaag
tctatgaagccagaaattaattttaaacaacacaattttcatctctgcaa
atgtgttaaaactcaattggttgaacaaaagtaaatgtttacaacagttt
ggtcaactcaaactctgagctgagtgctaaagtcccagccccttctaccc
tgggttgttttctatcgctatgacaaaagtcatggccaaaaataactggg
gaaggtagtgggtggattggcttaacacttcccgttcctagttggttact
aaggcaaggcagggatggacctcaagcaggaaacagaggtacgaatgatg
gaggggtgctgcttgcctgcctgggttttactattctccaggcccatctg
ctcagggatggcaccacctatcctacctaaccctcttatttcacactaac
gaacaacgtttaaggaaatactctaaattgaaatgataaatttgacaata
tttgccatagctctatttagagggaccgaggtacttgaaaccattacaca
gacccacaacgaaataaagtcaactactgtagagtcctttgtcagatggc
tgttggcattctacagagaaaagtagcatggaaacgcttataacaaatgg
ggaggggaagcaccaaattcttctatctgttccaaagatgtgggtgagca
catctgtactgaaagatgtgagcacatctgtaccgagccatgggtaagaa
caacggaaggagaagtattaatgttgtagaagaatgagataacttatttt
ctgattttatggtagcatattttatgtagagatgctcagtttttctctta
ttcatacaggctgtttgtgtttatatgtgcagcttattttatcattgtta
agtggccttgcccttattgtggctgaatgtccatctatcctagtagctac
gaattagtactggacttaccctgtcttggatatttcctaatgttgccctg
gatttctggacccagagaaattcgatcttgctaga
gaattcccaatggccctgtcttagcgctcaggagtagttgggattgtagg
gaccactgtaacagtcactgtgagtgagtgtacactgcagaaaggcttgc
tggatatggctgtggtaaccagcctgtgagacagtctcaatggacaccta
tctagtagctatattcacattgatgtagttcctttccatactgaataatg
gttgatctagctaataaaataggtgctacagaaaaaaaaaatatgtctta
aagtaacctggcatacgggaattttcccaaacactgggtaatatctgagt
cgcctgatcatcgctcgcaggcacatacatgggatgtggcggggacacat
acacacactgggcaatgtattgatttcagatgctgggctggggagagaat
tcattcagttaactactccgtgcctgtagaagaccggaccaggcatcccc
aggagccaggctaggaggcgcctctgtaacatcaaacctggaggcagagg
caggcggatcctggggcactctggtcagccagtctagccaccagtgggcc
tagccaggcagtctacccagccagtgagcctggttcagggacgaaaaatt
ccataatgagaaaagtccttatttaaaaaaaaaaaaaaaagtactctgag
tcatgaaataatgagaaaacccataaaacagtaaaattgaataagttttt
tacaatgagaaaaaaaaattaggcaacagcttctgttggaaagtcaaaca
aaactatccagaactctgttactcgatgaccaagagcagctccacactgt
caggaccaaaggacctttgtaaaacaattattccccagagcttcactgtt
agggagagcagggctgggaatactgttgcaccactcttaagttcctgtta
gccagtgtccaaattcatttgagtcaagcctgatggcttccaattcaata
cttcaaggtgcaatcactagattagtctttgccctggagttacacagcca
gcatgacaatagactgaggcaaataagccatatttattagcggagcttga
agagaatgtagccatgaccttcacatttttgactggataaaaccgttaaa
tttattaacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_55351100_55352301
seq2: B6Ng01-163D06.b_47_1231

seq1  GAATTCTCTTACTGTCCAGTGTAAGACACAAATTGGAGAAATATTGAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTACTGTCCAGTGTAAGACACAAATTGGAGAAATATTGAAGG  50

seq1  CAAACATGTTCTTATCTAAGACTCCACATCTTAGAAGGCATGCTCATAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATGTTCTTATCTAAGACTCCACATCTTAGAAGGCATGCTCATAGA  100

seq1  AACAATTATGTGTACTCATGAGATTAGATAAAAATATAAAATATGGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTATGTGTACTCATGAGATTAGATAAAAATATAAAATATGGGAAA  150

seq1  GATCTATTTTCATTAGTTGTTAAAACAGATGAAAGTAATAACTTCTCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTATTTTCATTAGTTGTTAAAACAGATGAAAGTAATAACTTCTCAAG  200

seq1  TCTATGAAGCCAGAAATTAATTTTAAACAACACAATTTTCATCTCTGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGAAGCCAGAAATTAATTTTAAACAACACAATTTTCATCTCTGCAA  250

seq1  ATGTGTTAAAACTCAATTGGTTGAACAAAAGTAAATGTTTACAACAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTAAAACTCAATTGGTTGAACAAAAGTAAATGTTTACAACAGTTT  300

seq1  GGTCAACTCAAACTCTGAGCTGAGTGCTAAAGTCCCAGCCCCTTCTACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAACTCAAACTCTGAGCTGAGTGCTAAAGTCCCAGCCCCTTCTACCC  350

seq1  TGGGTTGTTTTCTATCGCTATGACAAAAGTCATGGCCAAAAATAACTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTGTTTTCTATCGCTATGACAAAAGTCATGGCCAAAAATAACTGGG  400

seq1  GAAGGTAGTGGGTGGATTGGCTTAACACTTCCCGTTCCTAGTTGGTTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTAGTGGGTGGATTGGCTTAACACTTCCCGTTCCTAGTTGGTTACT  450

seq1  AAGGCAAGGCAGGGATGGACCTCAAGCAGGAAACAGAGGTACGAATGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAGGCAGGGATGGACCTCAAGCAGGAAACAGAGGTACGAATGATG  500

seq1  GAGGGGTGCTGCTTGCCTGCCTGGGTTTTACTATTCTCCAGGCCCATCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGTGCTGCTTGCCTGCCTGGGTTTTACTATTCTCCAGGCCCATCTG  550

seq1  CTCAGGGATGGCACCACCTATCCTACCTAACCCTCTTATTTCACACTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGATGGCACCACCTATCCTACCTAACCCTCTTATTTCACACTAAC  600

seq1  GAACAACGTTTAAGGAAATACTCTAAATTGAAATGATAAATTTGACAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACGTTTAAGGAAATACTCTAAATTGAAATGATAAATTTGACAATA  650

seq1  TTTGCCATAGCTCTATTTAGAGGGACCGAGGTACTTGAAACCATTACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCATAGCTCTATTTAGAGGGACCGAGGTACTTGAAACCATTACACA  700

seq1  GACCCACAACGAAATAAAGTCAACTACTGTAGAGTCCTTTGTCAGATGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCACAACGAAATAAAGTCAACTACTGTAGAGTCCTTTGTCAGATGGC  750

seq1  TGTTGGCATTCTACAGAGAAAAGTAGCATGGAAACGCTTATAACAAATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGCATTCTACAGAGAAAAGTAGCATGGAAACGCTTATAACAAATGG  800

seq1  GGAGGGGAAGCACCAAATTCTTCTATCTGTTCCAAAGATGTGGGTGAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGAAGCACCAAATTCTTCTATCTGTTCCAAAGATGTGGGTGAGCA  850

seq1  CATCTGTACTGAAAGATGTGAGCACATCTGTACCGAGCCATGGGTAAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTACTGAAAGATGTGAGCACATCTGTACCGAGCCATGGGTAAGAA  900

seq1  CAACGGAAGGAGAAGTATTAATGTTGTAAGAAGAATGAGAATAACTTATT  950
      ||||||||||||||||||||||||||| ||||||||||| ||||||||||
seq2  CAACGGAAGGAGAAGTATTAATGTTGT-AGAAGAATGAG-ATAACTTATT  948

seq1  TTCTGATTTTATGGTAGCATATTTTTATTGTAGAGATGCTCAGTTTTTCT  1000
      |||||||||||||||||||||||||   ||||||||||||||||||||||
seq2  TTCTGATTTTATGGTAGCATATTTT--ATGTAGAGATGCTCAGTTTTTCT  996

seq1  CTTATTCAATACAGGCTGTTTGTGTTTATATGTGCAGCTTATTTTATTCA  1050
      ||||||| |||||||||||||||||||||||||||||||||||||||   
seq2  CTTATTC-ATACAGGCTGTTTGTGTTTATATGTGCAGCTTATTTTATCAT  1045

seq1  TGTTAAGTGGGCTTGCCCTTATTGGTGGCTTGAATGTCCATCTTATCGTA  1100
      |||||||||| |||||||||||| ||||| |||||||||||| |||| ||
seq2  TGTTAAGTGGCCTTGCCCTTATT-GTGGC-TGAATGTCCATC-TATCCTA  1092

seq1  GTAGCTACAGAATTAGTACTGGAACTACCCTGTCTTGTAATATTTCCTAA  1150
      |||||||| ||||||||||||||  ||||||||||||  ||||||||| |
seq2  GTAGCTAC-GAATTAGTACTGGACTTACCCTGTCTTG-GATATTTCCT-A  1139

seq1  ATGTTTGCCCTTGAATTTCATGGACCCCAGAGAAATTCAGATTCTTGCTA  1200
      ||| |||||| || ||||| |||| ||||||||||||| || ||||||||
seq2  ATG-TTGCCC-TGGATTTC-TGGA-CCCAGAGAAATTC-GA-TCTTGCTA  1183

seq1  GA  1202
      ||
seq2  GA  1185

seq1: chr19_55516169_55517292
seq2: B6Ng01-163D06.g_68_1178 (reverse)

seq1  TGGTTAATAGATTTAAACGGTTTTTAATCCAGTCAATAAATGTGAAGGTC  50
      ||||||||| |||| |||||||||  |||||||||| |||||||||||||
seq2  TGGTTAATAAATTT-AACGGTTTT--ATCCAGTCAA-AAATGTGAAGGTC  46

seq1  CACTGGCTACATTCTCTTCAGGCTTCTGCTAATTAATTATGGCTTATTTT  100
         ||||||||||||||||| || || ||||| ||| |||||||||||| 
seq2  --ATGGCTACATTCTCTTCAAGC-TCCGCTAA-TAAATATGGCTTATTTG  92

seq1  GCTCAAGTTCTATTGTCATGCTGGCTGTGTAACT-CAGGGCAAAGACTCA  149
       ||||   |||||||||||||||||||||||||| ||||||||||||| |
seq2  CCTCA--GTCTATTGTCATGCTGGCTGTGTAACTCCAGGGCAAAGACT-A  139

seq1  CTCTAGTGATTTGCACCTTGAGGTATTGAATTGGAAGCCAATCAGGCTTG  199
       |||||||| ||||||||||| ||||||||||||||||| ||||||||||
seq2  ATCTAGTGA-TTGCACCTTGAAGTATTGAATTGGAAGCC-ATCAGGCTTG  187

seq1  ACTCAAATGAATTTGGACACTGGCTAAACAGGAACTTAAGAGTGGTGCAC  249
      ||||||||||||||||||||||||| ||||||||||||||||||||||| 
seq2  ACTCAAATGAATTTGGACACTGGCT-AACAGGAACTTAAGAGTGGTGCAA  236

seq1  CAGTATTCCCAGCCCTGCTCTCCCTAACAGTGAAGCTCTGGGGAATAATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTCCCAGCCCTGCTCTCCCTAACAGTGAAGCTCTGGGGAATAATT  286

seq1  GTTTTACAAAGGTCCTTTGGTCCTGACAGTGTGGAGCTGCTCTTGGTCAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACAAAGGTCCTTTGGTCCTGACAGTGTGGAGCTGCTCTTGGTCAT  336

seq1  CGAGTAACAGAGTTCTGGATAGTTTTGTTTGACTTTCCAACAGAAGCTGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTAACAGAGTTCTGGATAGTTTTGTTTGACTTTCCAACAGAAGCTGT  386

seq1  TGCCTAATTTTTTTTTCTCATTGTAAAAAACTTATTCAATTTTACTGTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAATTTTTTTTTCTCATTGTAAAAAACTTATTCAATTTTACTGTTT  436

seq1  TATGGGTTTTCTCATTATTTCATGACTCAGAGTACTTTTTTTTTTTTTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGTTTTCTCATTATTTCATGACTCAGAGTACTTTTTTTTTTTTTTT  486

seq1  TAAATAAGGACTTTTCTCATTATGGAATTTTTCGTCCCTGAACCAGGCTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAGGACTTTTCTCATTATGGAATTTTTCGTCCCTGAACCAGGCTC  536

seq1  ACTGGCTGGGTAGACTGCCTGGCTAGGCCCACTGGTGGCTAGACTGGCTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTGGGTAGACTGCCTGGCTAGGCCCACTGGTGGCTAGACTGGCTG  586

seq1  ACCAGAGTGCCCCAGGATCCGCCTGCCTCTGCCTCCAGGTTTGATGTTAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGTGCCCCAGGATCCGCCTGCCTCTGCCTCCAGGTTTGATGTTAC  636

seq1  AGAGGCGCCTCCTAGCCTGGCTCCTGGGGATGCCTGGTCCGGTCTTCTAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCGCCTCCTAGCCTGGCTCCTGGGGATGCCTGGTCCGGTCTTCTAC  686

seq1  AGGCACGGAGTAGTTAACTGAATGAATTCTCTCCCCAGCCCAGCATCTGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACGGAGTAGTTAACTGAATGAATTCTCTCCCCAGCCCAGCATCTGA  736

seq1  AATCAATACATTGCCCAGTGTGTGTATGTGTCCCCGCCACATCCCATGTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATACATTGCCCAGTGTGTGTATGTGTCCCCGCCACATCCCATGTA  786

seq1  TGTGCCTGCGAGCGATGATCAGGCGACTCAGATATTACCCAGTGTTTGGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTGCGAGCGATGATCAGGCGACTCAGATATTACCCAGTGTTTGGG  836

seq1  AAAATTCCCGTATGCCAGGTTACTTTAAGACATATTTTTTTTTTCTGTAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCCCGTATGCCAGGTTACTTTAAGACATATTTTTTTTTTCTGTAG  886

seq1  CACCTATTTTATTAGCTAGATCAACCATTATTCAGTATGGAAAGGAACTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTATTTTATTAGCTAGATCAACCATTATTCAGTATGGAAAGGAACTA  936

seq1  CATCAATGTGAATATAGCTACTAGATAGGTGTCCATTGAGACTGTCTCAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATGTGAATATAGCTACTAGATAGGTGTCCATTGAGACTGTCTCAC  986

seq1  AGGCTGGTTACCACAGCCATATCCAGCAAGCCTTTCTGCAGTGTACACTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGTTACCACAGCCATATCCAGCAAGCCTTTCTGCAGTGTACACTC  1036

seq1  ACTCACAGTGACTGTTACAGTGGTCCCTACAATCCCAACTACTCCTGAGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACAGTGACTGTTACAGTGGTCCCTACAATCCCAACTACTCCTGAGC  1086

seq1  GCTAAGACAGGGCCATTGGGAATTC  1124
      |||||||||||||||||||||||||
seq2  GCTAAGACAGGGCCATTGGGAATTC  1111