BAC Information

Click to search

BAC

Clone NameB6Ng01-163L07
Chromosome19 (Build37)
Map Location 48,643,063 - 48,644,157
singlet/doubletsinglet
Overlap geneSorcs3
Upstream geneSlk, Col17a1, 6330577E15Rik, D19Ertd652e, LOC677174, Gsto1, Gsto2, BC063749, Gm969, LOC670576
Downstream geneLOC100042896
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163L07.bB6Ng01-163L07.g
ACCDH956224DH956225
length9601,103
definitionDH956224|Mus musculus domesticus DNA, BAC clone: B6Ng01-163L07, 5' end.DH956225|Mus musculus domesticus DNA, BAC clone: B6Ng01-163L07, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcataccctgagccacatcttctaattctcttttgctggtgaatta
ttctcaggtcccagaggttcaactgtggacaccctcactataacctgctc
cgtttgcttgtctgtatgtttcagggctgaccatttggtattgaattatg
aattgctgtgctcctcccccactctcagcatgccttactcgcccatagtt
ctttttatagggtgagggcctcatactcctctccctgtccatgttagcct
gtctgctggtggtgtccttgctcagcccatgttaatacagtcatgttggt
gagactttccgggtttagctcctagatttactaagatccacagtctcaga
gcaaactccccgatcctttgactcttcagacttgctgccccctctccttc
aatgttccctgagcttaaggtaaggagttcttttatgggtgtatctattg
gcactgggctccacaactctgcattttggttagttgcagttgtctgtagt
gatcttcctctgtttcaaatgcagttttccttgatgtaggtgagggttag
ctacacttctctgtgagtacaaacatttaaaatatagttaggatttatgc
tgatttagtaaagtgatatttgtaagttcccttccaagatccagtactta
accaattctgggttaggtttcaggtatcaggtgtgatttcccacttgttg
agatcctgagtccaattagtgacccattggtttctgccgaggtatgtgca
ccgtgactgtatgcttagggttatggtgctgggctggttgttgttgtggt
tcatagatgccatagcttggtaggactgttggctattttcttcctttaga
agtttcggccatcagtggaaagagaggcccattggtcgtgcaaactttta
tctgcctcagtacatgggaatgccaaggccaagaagtgggagtgggaggg
gtggggggag

gaattcttttcctccaaaatttttagttttcccattggctctgatactta
gtaatgtctgatgatggctgaaggaattgatttctctctaccacatcgtt
agttgtttactttgaaaaaaacaaaactaaactaaaccaaattcactagg
ctgtagtgatatcagaagaaatgatgtagatgaaaatcttcttacaatgc
ctggcacacagtaatactacaacctagatgctaaaacagggtgtgtgtag
atccatagcttcctctaaatgagaagcagaaaacatgtagtccaaacagc
tcagtgctcaaaaacatctttctgttctttgggcagcagttatcacacgg
gaagcacaaatagcatgcctatgatatacctgcaaagtggacatttctca
ggctagcctcggcactgagtgaagaaaaatgcacccagaagggtgtgaca
gtcttcaaatgagccaggatgtctgactgtatctccttagttagacactg
ttgaacgttaaggaagggatcccactgtagggagtttctagcgacatcag
tgaaatacacaccttctccgagaactgacttctagatatgtgttatacta
tgtgctgagacccacagattcacagtgggaatggcctgctggaagataag
gcttcctcaaaagatacactgctgactgaaaatttggtgagtagaaaaaa
aactgagcaatcagaattatattttgccaagagatttctttgcccttcct
tctcgatcttctccatctccaaaaataattttccaaccttggaggtcaac
aataaatccttctttctttgtgataagtcatttgagccccaagggacttt
ctacctgagaagaagccccacccatgtctgtgtctctagaccaggtcttg
gattcctatttcctatcctttgctctctgagctcctttcaagacaggctt
tccctatagcccctcaccatttgatgcacagcacaaagcgccctgccttg
acactagtaacaaccttaggaacaacgggtaaattaaactacagccaatg
aatggaatctaaacgacgcaagcgggccttgcagcctgctttaaattttt
aac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_48643063_48644157
seq2: B6Ng01-163L07.g_68_1170 (reverse)

seq1  GTTAAAAA--TAAAGCAGGCTGCAAGGCCCGC-TGCGTCGTTTAGAT--C  45
      ||||||||  |||||||||||||||||||||| ||||||||||||||  |
seq2  GTTAAAAATTTAAAGCAGGCTGCAAGGCCCGCTTGCGTCGTTTAGATTCC  50

seq1  ATTCATTGGCTGTAGATTTATTTACCCGTTGTTCCT-AGGTTGTTACTAG  94
      ||||||||||||||| || ||||||||||||||||| |||||||||||||
seq2  ATTCATTGGCTGTAGTTTAATTTACCCGTTGTTCCTAAGGTTGTTACTAG  100

seq1  TTGTC-AGGCAGGGCGCTTTGTGCTGTGCATCAAATGGTGAGGGGCTATA  143
       |||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  -TGTCAAGGCAGGGCGCTTTGTGCTGTGCATCAAATGGTGAGGGGCTATA  149

seq1  GGGGAAGCCTGTCTTG-AAGGAGCTCAGAAGAGCAAAGGATA-GAAATAG  191
      ||| |||||||||||| ||||||||||| ||||||||||||| |||||||
seq2  GGGAAAGCCTGTCTTGAAAGGAGCTCAG-AGAGCAAAGGATAGGAAATAG  198

seq1  GAATCCAAGACCTGGTCTAGAGACACAGACATGGGTGGGGCTTCTTCTCA  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCAAGACCTGGTCTAGAGACACAGACATGGGTGGGGCTTCTTCTCA  248

seq1  GGTAG-AAGTCCCTTGGGGCTCAAATGACTTATCACAAAGAAAGAAGGAT  290
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAAAGTCCCTTGGGGCTCAAATGACTTATCACAAAGAAAGAAGGAT  298

seq1  TTATTGTTGACCTCCAAGGTTGGAAAATTATTTTTGGAGATGGAGAAGAT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTTGACCTCCAAGGTTGGAAAATTATTTTTGGAGATGGAGAAGAT  348

seq1  CGAGAAGGAAGGGCAAAGAAATCTCTTGGCAAAATATAATTCTGATTGCT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAAGGAAGGGCAAAGAAATCTCTTGGCAAAATATAATTCTGATTGCT  398

seq1  CAGTTTTTTTTCTACTCACCAAATTTTCAGTCAGCAGTGTATCTTTTGAG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTTTTTCTACTCACCAAATTTTCAGTCAGCAGTGTATCTTTTGAG  448

seq1  GAAGCCTTATCTTCCAGCAGGCCATTCCCACTGTGAATCTGTGGGTCTCA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTTATCTTCCAGCAGGCCATTCCCACTGTGAATCTGTGGGTCTCA  498

seq1  GCACATAGTATAACACATATCTAGAAGTCAGTTCTCGGAGAAGGTGTGTA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATAGTATAACACATATCTAGAAGTCAGTTCTCGGAGAAGGTGTGTA  548

seq1  TTTCACTGATGTCGCTAGAAACTCCCTACAGTGGGATCCCTTCCTTAACG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTGATGTCGCTAGAAACTCCCTACAGTGGGATCCCTTCCTTAACG  598

seq1  TTCAACAGTGTCTAACTAAGGAGATACAGTCAGACATCCTGGCTCATTTG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACAGTGTCTAACTAAGGAGATACAGTCAGACATCCTGGCTCATTTG  648

seq1  AAGACTGTCACACCCTTCTGGGTGCATTTTTCTTCACTCAGTGCCGAGGC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGTCACACCCTTCTGGGTGCATTTTTCTTCACTCAGTGCCGAGGC  698

seq1  TAGCCTGAGAAATGTCCACTTTGCAGGTATATCATAGGCATGCTATTTGT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTGAGAAATGTCCACTTTGCAGGTATATCATAGGCATGCTATTTGT  748

seq1  GCTTCCCGTGTGATAACTGCTGCCCAAAGAACAGAAAGATGTTTTTGAGC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCCGTGTGATAACTGCTGCCCAAAGAACAGAAAGATGTTTTTGAGC  798

seq1  ACTGAGCTGTTTGGACTACATGTTTTCTGCTTCTCATTTAGAGGAAGCTA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCTGTTTGGACTACATGTTTTCTGCTTCTCATTTAGAGGAAGCTA  848

seq1  TGGATCTACACACACCCTGTTTTAGCATCTAGGTTGTAGTATTACTGTGT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTACACACACCCTGTTTTAGCATCTAGGTTGTAGTATTACTGTGT  898

seq1  GCCAGGCATTGTAAGAAGATTTTCATCTACATCATTTCTTCTGATATCAC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCATTGTAAGAAGATTTTCATCTACATCATTTCTTCTGATATCAC  948

seq1  TACAGCCTAGTGAATTTGGTTTAGTTTAGTTTTGTTTTTTTCAAAGTAAA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCCTAGTGAATTTGGTTTAGTTTAGTTTTGTTTTTTTCAAAGTAAA  998

seq1  CAACTAACGATGTGGTAGAGAGAAATCAATTCCTTCAGCCATCATCAGAC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAACGATGTGGTAGAGAGAAATCAATTCCTTCAGCCATCATCAGAC  1048

seq1  ATTACTAAGTATCAGAGCCAATGGGAAAACTAAAAATTTTGGAGGAAAAG  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTAAGTATCAGAGCCAATGGGAAAACTAAAAATTTTGGAGGAAAAG  1098

seq1  AATTC  1095
      |||||
seq2  AATTC  1103


| Home | SequenceCutter | Blast | Download |