BAC Information

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BAC

Clone NameB6Ng01-164J13
Chromosome19 (Build37)10 (Build37)
Map Location 18,009,958 - 18,010,00755,645,888 - 55,647,055
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneA230083H22Rik, Gcnt1, Rfk, Pcsk5, Eef1a1-ps1
Downstream geneLOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164J13.bB6Ng01-164J13.g
ACCDH956879DH956880
length4191,169
definitionDH956879|Mus musculus domesticus DNA, BAC clone: B6Ng01-164J13, 5' end.DH956880|Mus musculus domesticus DNA, BAC clone: B6Ng01-164J13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,009,958 - 18,010,007)(55,645,888 - 55,647,055)
sequence
tgtactaaagccagctggccctgggcttcttttggttggggacgtttaat
gactttttctatttctgtaggtgttatgggactgtgtagatagtttacct
gatcctgattttactttggtatctaatatctgtctacctgaaggtgtttg
caatcccacaggaagaacaatatcagtgaaccagaccccacaaagctccc
agggacgaaactgccaaccaaagaatacacatgggagggatacatggccc
cagctgaatatgtggcagaggattgctttatctggcatcaatgagaggga
agtcccttggtcctgtaaaggctcaatgccccagtgcaggggaatgctag
agtgctgaggcagaagtgggtgggcaggttggggagcaccctcatagagg
cagggggaggagtgagaga
gaattccattaatcccctaagcacatggaattatcggtagcagtttttaa
ctttttattatgtctgtaggaccacatataagggttgtgcataggagtgt
ttgggagcccagaagaggacatcaaataccctggacttggagttaaaggt
agttctgagctgctcaacctgagtgctaggaactgaactctcgttctttg
gaaattcatgtgtgttcttcactgtcaagctatctctttagccccatggt
tgacattctgttttattttgctttgtttttccttttattggatattttct
ttattcacatttcaaatgttataccctttccaggtatcctctgcagaaat
ctcctatcccattcacagtcccccctgcctctatgagggtgctgccccat
ccacccacccattccagcctttctgccctggcattcccctacactagggt
atcaagccccctcatatccaaaagctactcttcccactgatgtccaataa
ggccatcttctgccacatatgcagctggagccatgggtacttccatgtgt
actctttggttggtgatccagtccccaggagggccgggggtctggctagt
tgacactgttgctcccccatggggctgcaaaccccctcagctcgttgagt
cccttctccaactcctctatcgaggaccctgcactcatggttgacactct
tataacactgctcaaaatgaattctgtttctagtactagctgtttcatta
cagttaaaattaaagactaaagaagtgtattcaggggctggagagatgac
tcagcagtttaagaccactggctactcttctagagggtccagagttcaat
ttcccagcaaccacatggtagctcacaagcatctgtaatgaggtctgata
cactcttttggcatacaggtacacatgcagatagagcactcatatacata
aaataaacataattttagaagaagatgctttttttttaaaaaggttattc
aaagttagccaaattgtgatttttgtaccagctaatttgtcactgcaaac
agatgacaaagttgcagcagttactccatccacgtgactccacagggaag
gcagcctgttttggtctcacaataaaaggcatgaagagcgtagaatcttt
gctccctgcacagtgtgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_18009958_18010007
seq2: B6Ng01-164J13.b_416_469 (reverse)

seq1  TCTCTCTCTCCTCCCCCTGCCTCTATGAGGGTGCTTCCCCA----CCCAC  46
      |||||| |||||||||||||||||||||||||||| ||| |    |||||
seq2  TCTCTCACTCCTCCCCCTGCCTCTATGAGGGTGCTCCCCAACCTGCCCAC  50

seq1  CCAC  50
      ||||
seq2  CCAC  54

seq1: chr10_55645888_55647055
seq2: B6Ng01-164J13.g_67_1235

seq1  GAATTCCATTAATCCCCTAAGCACATGGAATTATCGGTAGCAGTTTTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTAATCCCCTAAGCACATGGAATTATCGGTAGCAGTTTTTAA  50

seq1  CTTTTTATTATGTCTGTAGGACCACATATAAGGGTTGTGCATAGGAGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTATTATGTCTGTAGGACCACATATAAGGGTTGTGCATAGGAGTGT  100

seq1  TTGGGAGCCCAGAAGAGGACATCAAATACCCTGGACTTGGAGTTAAAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGCCCAGAAGAGGACATCAAATACCCTGGACTTGGAGTTAAAGGT  150

seq1  AGTTCTGAGCTGCTCAACCTGAGTGCTAGGAACTGAACTCTCGTTCTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGAGCTGCTCAACCTGAGTGCTAGGAACTGAACTCTCGTTCTTTG  200

seq1  GAAATTCATGTGTGTTCTTCACTGTCAAGCTATCTCTTTAGCCCCATGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCATGTGTGTTCTTCACTGTCAAGCTATCTCTTTAGCCCCATGGT  250

seq1  TGACATTCTGTTTTATTTTGCTTTGTTTTTCCTTTTATTGGATATTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTCTGTTTTATTTTGCTTTGTTTTTCCTTTTATTGGATATTTTCT  300

seq1  TTATTCACATTTCAAATGTTATACCCTTTCCAGGTATCCTCTGCAGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCACATTTCAAATGTTATACCCTTTCCAGGTATCCTCTGCAGAAAT  350

seq1  CTCCTATCCCATTCACAGTCCCCCCTGCCTCTATGAGGGTGCTGCCCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTATCCCATTCACAGTCCCCCCTGCCTCTATGAGGGTGCTGCCCCAT  400

seq1  CCACCCACCCATTCCAGCCTTTCTGCCCTGGCATTCCCCTACACTAGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCACCCATTCCAGCCTTTCTGCCCTGGCATTCCCCTACACTAGGGT  450

seq1  ATCAAGCCCCCTCATATCCAAAAGCTACTCTTCCCACTGATGTCCAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGCCCCCTCATATCCAAAAGCTACTCTTCCCACTGATGTCCAATAA  500

seq1  GGCCATCTTCTGCCACATATGCAGCTGGAGCCATGGGTACTTCCATGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATCTTCTGCCACATATGCAGCTGGAGCCATGGGTACTTCCATGTGT  550

seq1  ACTCTTTGGTTGGTGATCCAGTCCCCAGGAGGGCCGGGGGTCTGGCTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTGGTTGGTGATCCAGTCCCCAGGAGGGCCGGGGGTCTGGCTAGT  600

seq1  TGACACTGTTGCTCCCCCATGGGGCTGCAAACCCCCTCAGCTCGTTGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTGTTGCTCCCCCATGGGGCTGCAAACCCCCTCAGCTCGTTGAGT  650

seq1  CCCTTCTCCAACTCCTCTATCGAGGACCCTGCACTCATGGTTGACACTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTCCAACTCCTCTATCGAGGACCCTGCACTCATGGTTGACACTCT  700

seq1  TATAACACTGCTCAAAATGAATTCTGTTTCTAGTACTAGCTGTTTCATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACACTGCTCAAAATGAATTCTGTTTCTAGTACTAGCTGTTTCATTA  750

seq1  CAGTTAAAATTAAAGACTAAAGAAGTGTATTCAGGGGCTGGAGAGATGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAAAATTAAAGACTAAAGAAGTGTATTCAGGGGCTGGAGAGATGAC  800

seq1  TCAGCAG-TTAAGACCACTGGCTACTCTTCTAGA-GGTCCAGAGTTCAA-  847
      ||||||| |||||||||||||||||||||||||| |||||||||||||| 
seq2  TCAGCAGTTTAAGACCACTGGCTACTCTTCTAGAGGGTCCAGAGTTCAAT  850

seq1  TTCCCAGCAACCACATGGTAGCTCACAAGCATCTGTAATGAGGTCTGATA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGCAACCACATGGTAGCTCACAAGCATCTGTAATGAGGTCTGATA  900

seq1  CACTCTTCTGGCATACAGGTACACATGCAGATAGAGCACTCATATACATA  947
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTTTGGCATACAGGTACACATGCAGATAGAGCACTCATATACATA  950

seq1  AAAATAAAACATAATTTTAGAAGAAGAATGCTTTTTTTTAAAAAAGGTTA  997
      |||   |||||||||||||||||||| |||||||||||| ||||||||||
seq2  AAA--TAAACATAATTTTAGAAGAAG-ATGCTTTTTTTTTAAAAAGGTTA  997

seq1  TTCAAAGTTAGCCAAATGTTGATTTTTGTACCAGCTAATTTGTCACTGCA  1047
      |||||||||||||||||  |||||||||||||||||||||||||||||||
seq2  TTCAAAGTTAGCCAAATTGTGATTTTTGTACCAGCTAATTTGTCACTGCA  1047

seq1  AACAGATGACAAAG-TGCAGCAGTTACT-CAT-CACGTTGACT-CACAGG  1093
      |||||||||||||| ||||||||||||| ||| |||| ||||| ||||||
seq2  AACAGATGACAAAGTTGCAGCAGTTACTCCATCCACG-TGACTCCACAGG  1096

seq1  GAAGGCAGCCTGTTTTGGTCTCACCATTAAAAGGCATGAGAGACATGTAG  1143
      ||||||||||||||||||||||| || |||||||||||| |||   ||||
seq2  GAAGGCAGCCTGTTTTGGTCTCA-CAATAAAAGGCATGA-AGA-GCGTAG  1143

seq1  TATCTTTGCTCCCTGCACA-TGTGTA  1168
       |||||||||||||||||| ||||||
seq2  AATCTTTGCTCCCTGCACAGTGTGTA  1169