BAC Information

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BAC

Clone NameB6Ng01-165F23
Chromosome19 (Build37)
Map Location 18,890,234 - 19,082,263
singlet/doubletdoublet
Overlap geneTrpm6, Rorb
Upstream genePcsk5, Eef1a1-ps1, LOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik
Downstream geneLOC100042218
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165F23.bB6Ng01-165F23.g
ACCDH957447DH957448
length1,074929
definitionDH957447|Mus musculus domesticus DNA, BAC clone: B6Ng01-165F23, 5' end.DH957448|Mus musculus domesticus DNA, BAC clone: B6Ng01-165F23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,081,184 - 19,082,263)(18,890,234 - 18,891,156)
sequence
gaattctcttaaggtttaaagcctggagtgtttaaagaaaatgttagtaa
atgaacaaccagggcttacattttctgattaaagtttacttgctgctccc
tccctttttcctttttcccttttcctttttcccttttcccttttcctttt
tcctttttcctttttttcctctgttttcttttcttttttctctctgaaaa
cttgttttcatcattaatgactactctaaaattatgtttacaccagaact
gggttcttttcattggaaatcgattttttttcatagaatatattgtgatt
gtagtttccctttcctcagctcctcctagatcctcccccattgacccact
gacccaaatccacaccccttctttctatctctctctttaatacaaacagg
tatctaaagtaataatgataaaatatgataaaaatgaaaaccatcaagac
agaataacacaaaacaaacaggaaaaaaaaaacagaaccacagaaaaagc
acaagaatcaaatgaagacaagacgcccactttcgcacacacagaaaacc
cctaaaaacaaaattggaaaccataatatataagcgaaagattggctgtt
acttactcctactttgaaatttttctagttcctttgtaacctattctgct
actcatataactttctcttagataaaataataagtaagaagagttgggaa
agtacttggaaatgtgaagaggttcagttttataatatgggtctggttca
aagttaaaatatctgaaaattcagccacccagaataacagctttagatta
atacaatagttattacactccaccaaaattaaactgctaacattcctttg
tggattatcccatttgagtgctccctgggcacaatgatccatttgcaaac
tgtaataaattaccctatacctctgtgtagacactgagaaattttatgaa
cattaatcatcctgattccctattcaaggataatggaagcacagtttcta
catacggtcttggaaaaacaaaaaaaagatttttctaggtgccttaggga
aaacctgtcagtaaccctaaatag
gaattccaacagaaacgaggctttaaggggctgcgtgcatagcttagaat
gtttgaacaacatccacaaagatgtgggtttggtcctcagcaccacaaag
taaataaataataataggcaagaaaataaataaaaattagcaaattttat
tgcttctgggactccatggctgcctcataaggctctcctgcagcagctgt
tcacaccattcatcaggtctaagttctcagcttcttcagttatgtaagca
ggaataccttagttcaatgtctaagatttataccatgaactgtggaccgg
aagtgtgaagctttccatctggtcaacctccaagtatatatgtctgggaa
actcaatagaagggaatgaagccttattggtaagacctacacgagactgt
actttgcattttatttggtctttgtccagtgtttaaaacctagtatatgt
taaacagagtggctattataaaaaaaatagatatttttggtagatatact
aactcaacaaaataaatcttatgtaagataggagaggctacttgtatttt
aatttctatcggtgagatcagagagagatgaaaaatgccaatcaaaaatt
atctcataaggttttcacaaaacaccatagaaaacgccatcatttcccaa
aattctcccttgatcccctttgacatcagatctggaaatgatgaaacaga
tgtgggatgagtctgccttcactttcccagctctggaagtagctcttaca
aatgcttggtcatgagaaggctacagcagagagtctgaggtagcgctgtt
tgctcccccaccccccacattaccttccagaaattctgtctctgagaact
taatgggagtttttgccttttatatacatgttgtaatgtgttgtgtgcat
tttgtgtgtttgggggatggggtggggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_19081184_19082263
seq2: B6Ng01-165F23.b_43_1116 (reverse)

seq1  CTATTTATGTGTTTACTGACAGTTTTTCCCTAAGGCA-CTAGAAAAATCT  49
      |||||||   | |||||||||| |||||||||||||| ||||||||||||
seq2  CTATTTA--GGGTTACTGACAGGTTTTCCCTAAGGCACCTAGAAAAATCT  48

seq1  TTTTTTTTGTTTTTCAAGACCGTATGTAGAAACTGTGCTTCCATTTATTC  99
      |||||||  |||| |||||||||||||||||||||||||||||||   ||
seq2  TTTTTTTGTTTTTCCAAGACCGTATGTAGAAACTGTGCTTCCATT--ATC  96

seq1  TTTGAATAGGGAATCAGGATGATTAAATGTTCATAAAATTTTCTCAGTGT  149
       ||||||||||||||||||||||| ||||||||||||| |||||||||||
seq2  CTTGAATAGGGAATCAGGATGATT-AATGTTCATAAAA-TTTCTCAGTGT  144

seq1  CTACACAGAGGTATAGGGTAATTTATTTACAGTTTTGCAAATGGATCATT  199
      ||||||||||||||||||||||||| |||||| ||||||||||||||| |
seq2  CTACACAGAGGTATAGGGTAATTTA-TTACAG-TTTGCAAATGGATCA-T  191

seq1  TGTG-CCAGGGAGCACTCAAATGGGATAATCCACAAAGGAATGTTAGCAG  248
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCAGGGAGCACTCAAATGGGATAATCCACAAAGGAATGTTAGCAG  241

seq1  TTTAATTTTGGTGGAGTGTAATAACTATTGTATTAATCTAAAGCTGTTAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTTGGTGGAGTGTAATAACTATTGTATTAATCTAAAGCTGTTAT  291

seq1  TCT-GGTGGCTGAATTTTCAGATATTTTAACTTTGAACCAGACCCATATT  347
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTGGCTGAATTTTCAGATATTTTAACTTTGAACCAGACCCATATT  341

seq1  ATAAAACTGAACCTCTTCACATTTCCAAGTACTTTCCCAACTCTTCTTAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTGAACCTCTTCACATTTCCAAGTACTTTCCCAACTCTTCTTAC  391

seq1  TTATTATTTTATCTAAGAGAAAGTTATATGAGTAGCAGAATAGGTTACAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTTTATCTAAGAGAAAGTTATATGAGTAGCAGAATAGGTTACAA  441

seq1  AGGAACTAGAAAAATTTCAAAGTAGGAGTAAGTAACAGCCAATCTTTCGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTAGAAAAATTTCAAAGTAGGAGTAAGTAACAGCCAATCTTTCGC  491

seq1  TTATATATTATGGTTTCCAATTTTGTTTTTAGGGGTTTTCTGTGTGTGCG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATATTATGGTTTCCAATTTTGTTTTTAGGGGTTTTCTGTGTGTGCG  541

seq1  AAAGTGGGCGTCTTGTCTTCATTTGATTCTTGTGCTTTTTCTGTGGTTCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGGCGTCTTGTCTTCATTTGATTCTTGTGCTTTTTCTGTGGTTCT  591

seq1  GTTTTTTTTTTCCTGTTTGTTTTGTGTTATTCTGTCTTGATGGTTTTCAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTTTCCTGTTTGTTTTGTGTTATTCTGTCTTGATGGTTTTCAT  641

seq1  TTTTATCATATTTTATCATTATTACTTTAGATACCTGTTTGTATTAAAGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCATATTTTATCATTATTACTTTAGATACCTGTTTGTATTAAAGA  691

seq1  GAGAGATAGAAAGAAGGGGTGTGGATTTGGGTCAGTGGGTCAATGGGGGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATAGAAAGAAGGGGTGTGGATTTGGGTCAGTGGGTCAATGGGGGA  741

seq1  GGATCTAGGAGGAGCTGAGGAAAGGGAAACTACAATCACAATATATTCTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTAGGAGGAGCTGAGGAAAGGGAAACTACAATCACAATATATTCTA  791

seq1  TGAAAAAAAATCGATTTCCAATGAAAAGAACCCAGTTCTGGTGTAAACAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAAAATCGATTTCCAATGAAAAGAACCCAGTTCTGGTGTAAACAT  841

seq1  AATTTTAGAGTAGTCATTAATGATGAAAACAAGTTTTCAGAGAGAAAAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAGAGTAGTCATTAATGATGAAAACAAGTTTTCAGAGAGAAAAAA  891

seq1  GAAAAGAAAACAGAGGAAAAAAAGGAAAAAGGAAAAAGGAAAAGGGAAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAAACAGAGGAAAAAAAGGAAAAAGGAAAAAGGAAAAGGGAAAA  941

seq1  GGGAAAAAGGAAAAGGGAAAAAGGAAAAAGGGAGGGAGCAGCAAGTAAAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAAGGAAAAGGGAAAAAGGAAAAAGGGAGGGAGCAGCAAGTAAAC  991

seq1  TTTAATCAGAAAATGTAAGCCCTGGTTGTTCATTTACTAACATTTTCTTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCAGAAAATGTAAGCCCTGGTTGTTCATTTACTAACATTTTCTTT  1041

seq1  AAACACTCCAGGCTTTAAACCTTAAGAGAATTC  1080
      |||||||||||||||||||||||||||||||||
seq2  AAACACTCCAGGCTTTAAACCTTAAGAGAATTC  1074

seq1: chr19_18890234_18891156
seq2: B6Ng01-165F23.g_68_996

seq1  GAATTCCAACAGAAACGAGGCTTTAAGGGGCTGCGTGCATAGCTTAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACAGAAACGAGGCTTTAAGGGGCTGCGTGCATAGCTTAGAAT  50

seq1  GTTTGAACAACATCCACAAAGATGTGGGTTTGGTCCTCAGCACCACAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAACAACATCCACAAAGATGTGGGTTTGGTCCTCAGCACCACAAAG  100

seq1  TAAATAAATAATAATAGGCAAGAAAATAAATAAAAATTAGCAAATTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATAATAATAGGCAAGAAAATAAATAAAAATTAGCAAATTTTAT  150

seq1  TGCTTCTGGGACTCCATGGCTGCCTCATAAGGCTCTCCTGCAGCAGCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTGGGACTCCATGGCTGCCTCATAAGGCTCTCCTGCAGCAGCTGT  200

seq1  TCACACCATTCATCAGGTCTAAGTTCTCAGCTTCTTCAGTTATGTAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACCATTCATCAGGTCTAAGTTCTCAGCTTCTTCAGTTATGTAAGCA  250

seq1  GGAATACCTTAGTTCAATGTCTAAGATTTATACCATGAACTGTGGACCGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATACCTTAGTTCAATGTCTAAGATTTATACCATGAACTGTGGACCGG  300

seq1  AAGTGTGAAGCTTTCCATCTGGTCAACCTCCAAGTATATATGTCTGGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGAAGCTTTCCATCTGGTCAACCTCCAAGTATATATGTCTGGGAA  350

seq1  ACTCAATAGAAGGGAATGAAGCCTTATTGGTAAGACCTACACGAGACTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATAGAAGGGAATGAAGCCTTATTGGTAAGACCTACACGAGACTGT  400

seq1  ACTTTGCATTTTATTTGGTCTTTGTCCAGTGTTTAAAACCTAGTATATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCATTTTATTTGGTCTTTGTCCAGTGTTTAAAACCTAGTATATGT  450

seq1  TAAACAGAGTGGCTATTATAAAAAAAATAGATATTTTTGGTAGATATACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGAGTGGCTATTATAAAAAAAATAGATATTTTTGGTAGATATACT  500

seq1  AACTCAACAAAATAAATCTTATGTAAGATAGGAGAGGCTACTTGTATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAACAAAATAAATCTTATGTAAGATAGGAGAGGCTACTTGTATTTT  550

seq1  AATTTCTATCGGTGAGATCAGAGAGAGATGAAAAATGCCAATCAAAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTATCGGTGAGATCAGAGAGAGATGAAAAATGCCAATCAAAAATT  600

seq1  ATCTCATAAGG-TTTCACAAAACACCATAGAAAACGCCATCATTTCCCAA  649
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATAAGGTTTTCACAAAACACCATAGAAAACGCCATCATTTCCCAA  650

seq1  AATTCTCCCTTGATCCCCTTTGACATCAGATCTGGAAATGATGAAACAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCCCTTGATCCCCTTTGACATCAGATCTGGAAATGATGAAACAGA  700

seq1  TGTGGGATGAGTCTGCCTTCACTTTCCCAGCTCTGGAAGTAGCTCTTACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGATGAGTCTGCCTTCACTTTCCCAGCTCTGGAAGTAGCTCTTACA  750

seq1  AATGCTTGGTCATGAGAAGGCTACAGCAGAGAGTCTGAGGTAGCGCTGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTGGTCATGAGAAGGCTACAGCAGAGAGTCTGAGGTAGCGCTGTT  800

seq1  TGCTCCCCCACCCCCCACATTACCTTCCAGAAATTCTGTCTCTGAGAACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCCCACCCCCCACATTACCTTCCAGAAATTCTGTCTCTGAGAACT  850

seq1  TAAT-GGAG-TTTTGCCTTTTATATACATGTTGTAATGTG-TGTGTGCA-  895
      |||| |||| |||||||||||||||||||||||||||||| |||||||| 
seq2  TAATGGGAGTTTTTGCCTTTTATATACATGTTGTAATGTGTTGTGTGCAT  900

seq1  TTTGTGTGTTT-GGGGATGGGGTGGGGGA  923
      ||||||||||| ||||||||||||||| |
seq2  TTTGTGTGTTTGGGGGATGGGGTGGGGCA  929