BAC Information

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BAC

Clone NameB6Ng01-167G11
Chromosome19 (Build37)
Map Location 29,080,239 - 29,136,015
singlet/doubletdoublet
Overlap geneCdc37l1, Ak3
Upstream geneRfx3, LOC433235, Glis3, EG434460, EG627788, Slc1a1, LOC545262, 4430402I18Rik, Ppapdc2, LOC100042006, EG226086, LOC672214
Downstream geneRcl1, LOC433238, Jak2, Insl6, Rln1, 5033414D02Rik, Cd274, Pdcd1lg2, C030046E11Rik, D19Wsu12e, Mlana, 9930021J03Rik, Ranbp6, Il33, Trpd52l3, Uhrf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167G11.bB6Ng01-167G11.g
ACCDH958914DH958915
length8441,096
definitionDH958914|Mus musculus domesticus DNA, BAC clone: B6Ng01-167G11, 5' end.DH958915|Mus musculus domesticus DNA, BAC clone: B6Ng01-167G11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,135,172 - 29,136,015)(29,080,239 - 29,081,366)
sequence
gaattcttttgttttaaagatgcttttgttgttgttgttttattttgttt
tttgttttttccaagattcttttctttcagaaacaggctacatacatact
ctctatgtagcccaggctagccttgagctctcagtcttcttgcttcagtc
acccgagtgctagttacaaacctgtaccagcgtgctgagatcgctagaat
atctttgagaagagagtcttagaaatgggatttctgtattaacagatagg
tatctatgaaatcgtacttaaatattgtcaaatctccctctctgtgtatt
gtaccatttttcatttcccttaataaaatatgagcacgtgctctccactg
cattctcttcacacggcgtccttcacttcaggtctgtgctaacctgacgt
aattcactgtgagcggcggcaggtccacactcctgctttctgtagcctgg
gcagtagtgttcagaggcctctctcctcccaggtaaaactgcagaaaacg
atctcagaatgagtctattcaaaacagagccgtagtttattaaacgaggc
tcccctcccttatccccctccccccatcatcctagagagaaaacctaagg
cttcacacaggctaggcatgcgtttcaccactgagctacatcgccagccc
tagaagagatttttaaatatagattaaaacaggtgtgtgtggggggtaac
agaaagttcagagaaagaaacagacacacccaagaatgtgggagtctcct
tctgaaagaagtcattgtctttataccagctatatatgtgtaggagtttg
gtgattaaaaaaagttaatgcgtaggggtggggatgggagtggg
gaattcattttgtgttgaaagtgaagttttattgtcatactctcaggaaa
gtcctgggaaacaccatgatggcttaataacatctgtactgtttgctgct
acgtgtaaatctaaagtttgaagcttctggcgttgcagtactcagtacat
acaagggtaaccctgaacagcacattgcagatgccgtgtgactcatcctg
actttgctaaattaggtgaagatgcagacgtacgacttgtactatttgga
ttcatttaatatcttgaaataaaatggcagcctttgaaatatgtccaatt
ggtttttaaaagaatggttatttactgtacacaactgaccagatgacagc
attagtgaatggctagtgtgactaacatgacaagggtatcagtgatcaca
gtaccaactagtgtttcccagccaataacatttcctgaagtggcaaattt
tattatatcctggacactttaaaaaacagagataatataggcctcaagcc
tcatgcataataagcaaattctttatcactggaccatgccctagtctgtt
tgttggattgtttttgtttttgaaacagtcttgcaaagttgctccggctg
tccttgaccggcctttgtggtccagacagcccttgcatttgcagtctttg
ccacagctaggcaatagtagagattcttactcatctttttaataaaaacc
atcctgctctcttagtaaatggtactgagttgtacaagctttaggggaag
atcaagtgtctcaatgtatgtggaactttgggtattcctgtaagcaggag
acatcaactggccactcttgttaagccagactaattatctgaaataaatc
gtgctggccattgatttttagaagttcagctttctttcttttcttttctt
ttcttttcttttctttttgttttcaagacagggttctctgtgtagccagg
ctgtcctgaactctgaatcagctgcctctgcctccaaggctggaatcaag
gcgtgcgccaccactggaaaacaaaggaaaaaaaaagaggagagaaggag
aagttcagcttctcgcttgcctgtcatgtatcacactgcggaactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_29135172_29136015
seq2: B6Ng01-167G11.b_48_891 (reverse)

seq1  CCCACTCCCATCCCCACCCCTACGCATTAACTTTTTTTAATCACCAAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCCCATCCCCACCCCTACGCATTAACTTTTTTTAATCACCAAACT  50

seq1  CCTACACATATATAGCTGGTATAAAGACAATGACTTCTTTCAGAAGGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACACATATATAGCTGGTATAAAGACAATGACTTCTTTCAGAAGGAGA  100

seq1  CTCCCACATTCTTGGGTGTGTCTGTTTCTTTCTCTGAACTTTCTGTTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACATTCTTGGGTGTGTCTGTTTCTTTCTCTGAACTTTCTGTTACC  150

seq1  CCCCACACACACCTGTTTTAATCTATATTTAAAAATCTCTTCTAGGGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACACACACCTGTTTTAATCTATATTTAAAAATCTCTTCTAGGGCTG  200

seq1  GCGATGTAGCTCAGTGGTGAAACGCATGCCTAGCCTGTGTGAAGCCTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATGTAGCTCAGTGGTGAAACGCATGCCTAGCCTGTGTGAAGCCTTAG  250

seq1  GTTTTCTCTCTAGGATGATGGGGGGAGGGGGATAAGGGAGGGGAGCCTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTCTCTAGGATGATGGGGGGAGGGGGATAAGGGAGGGGAGCCTCG  300

seq1  TTTAATAAACTACGGCTCTGTTTTGAATAGACTCATTCTGAGATCGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAAACTACGGCTCTGTTTTGAATAGACTCATTCTGAGATCGTTTT  350

seq1  CTGCAGTTTTACCTGGGAGGAGAGAGGCCTCTGAACACTACTGCCCAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTTTTACCTGGGAGGAGAGAGGCCTCTGAACACTACTGCCCAGGC  400

seq1  TACAGAAAGCAGGAGTGTGGACCTGCCGCCGCTCACAGTGAATTACGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAAGCAGGAGTGTGGACCTGCCGCCGCTCACAGTGAATTACGTCA  450

seq1  GGTTAGCACAGACCTGAAGTGAAGGACGCCGTGTGAAGAGAATGCAGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGCACAGACCTGAAGTGAAGGACGCCGTGTGAAGAGAATGCAGTGG  500

seq1  AGAGCACGTGCTCATATTTTATTAAGGGAAATGAAAAATGGTACAATACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACGTGCTCATATTTTATTAAGGGAAATGAAAAATGGTACAATACA  550

seq1  CAGAGAGGGAGATTTGACAATATTTAAGTACGATTTCATAGATACCTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGGGAGATTTGACAATATTTAAGTACGATTTCATAGATACCTATC  600

seq1  TGTTAATACAGAAATCCCATTTCTAAGACTCTCTTCTCAAAGATATTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAATACAGAAATCCCATTTCTAAGACTCTCTTCTCAAAGATATTCTA  650

seq1  GCGATCTCAGCACGCTGGTACAGGTTTGTAACTAGCACTCGGGTGACTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATCTCAGCACGCTGGTACAGGTTTGTAACTAGCACTCGGGTGACTGA  700

seq1  AGCAAGAAGACTGAGAGCTCAAGGCTAGCCTGGGCTACATAGAGAGTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAAGACTGAGAGCTCAAGGCTAGCCTGGGCTACATAGAGAGTATG  750

seq1  TATGTAGCCTGTTTCTGAAAGAAAAGAATCTTGGAAAAAACAAAAAACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGCCTGTTTCTGAAAGAAAAGAATCTTGGAAAAAACAAAAAACAA  800

seq1  AATAAAACAACAACAACAAAAGCATCTTTAAAACAAAAGAATTC  844
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACAACAACAACAAAAGCATCTTTAAAACAAAAGAATTC  844

seq1: chr19_29080239_29081366
seq2: B6Ng01-167G11.g_65_1160

seq1  GAATTCATTTTGTGTTGAAAGTGAAGTTTTATTGTCATACTCTCAGGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTGTGTTGAAAGTGAAGTTTTATTGTCATACTCTCAGGAAA  50

seq1  GTCCTGGGAAACACCATGATGGCTTAATAACATCTGTACTGTTTGCTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGGAAACACCATGATGGCTTAATAACATCTGTACTGTTTGCTGCT  100

seq1  ACGTGTAAATCTAAAGTTTGAAGCTTCTGGCGTTGCAGTACTCAGTACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTAAATCTAAAGTTTGAAGCTTCTGGCGTTGCAGTACTCAGTACAT  150

seq1  ACAAGGGTAACCCTGAACAGCACATTGCAGATGCCGTGTGACTCATCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGGTAACCCTGAACAGCACATTGCAGATGCCGTGTGACTCATCCTG  200

seq1  ACTTTGCTAAATTAGGTGAAGATGCAGACGTACGACTTGTACTATTTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCTAAATTAGGTGAAGATGCAGACGTACGACTTGTACTATTTGGA  250

seq1  TTCATTTAATATCTTGAAATAAAATGGCAGCCTTTGAAATATGTCCAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTAATATCTTGAAATAAAATGGCAGCCTTTGAAATATGTCCAATT  300

seq1  GGTTTTTAAAAGAATGGTTATTTACTGTACACAACTGACCAGATGACAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTAAAAGAATGGTTATTTACTGTACACAACTGACCAGATGACAGC  350

seq1  ATTAGTGAATGGCTAGTGTGACTAACATGACAAGGGTATCAGTGATCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTGAATGGCTAGTGTGACTAACATGACAAGGGTATCAGTGATCACA  400

seq1  GTACCAACTAGTGTTTCCCAGCCAATAACATTTCCTGAAGTGGCAAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAACTAGTGTTTCCCAGCCAATAACATTTCCTGAAGTGGCAAATTT  450

seq1  TATTATATCCTGGACACTTTAAAAAACAGAGATAATATAGGCCTCAAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATATCCTGGACACTTTAAAAAACAGAGATAATATAGGCCTCAAGCC  500

seq1  TCATGCATAATAAGCAAATTCTTTATCACTGGACCATGCCCTAGTCTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCATAATAAGCAAATTCTTTATCACTGGACCATGCCCTAGTCTGTT  550

seq1  TGTTGGATTGTTTTTGTTTTTGAAACAGTCTTGCAAAGTTGCTCCGGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGATTGTTTTTGTTTTTGAAACAGTCTTGCAAAGTTGCTCCGGCTG  600

seq1  TCCTTGACCGGCCTTTGTGGTCCAGACAGCCCTTGCATTTGCAGTCTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGACCGGCCTTTGTGGTCCAGACAGCCCTTGCATTTGCAGTCTTTG  650

seq1  CCACAGCTAGGCAATAGTAGAGATTCTTACTCATCTTTTTAATAAAAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCTAGGCAATAGTAGAGATTCTTACTCATCTTTTTAATAAAAACC  700

seq1  ATCCTGCTCTCTTAGTAAATGGTACTGAGTTGTACAAGCTTTAGGGGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGCTCTCTTAGTAAATGGTACTGAGTTGTACAAGCTTTAGGGGAAG  750

seq1  ATCAAGTGTCTCAATGTATGTGGAACTTTGGGTATTCCTGTAAGCAGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTGTCTCAATGTATGTGGAACTTTGGGTATTCCTGTAAGCAGGAG  800

seq1  ACATCAACTGGCCACTCTTGTTAAGCCAGACTAATTATCTGAAATAAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAACTGGCCACTCTTGTTAAGCCAGACTAATTATCTGAAATAAATC  850

seq1  GTGCTGGCCATTGATTTTTAAGAAGTTCAGCTTTCTTTTCTTTTTCTTTT  900
      ||||||||||||||||||| ||||||||||||||||||   |||||||||
seq2  GTGCTGGCCATTGATTTTT-AGAAGTTCAGCTTTCTTT--CTTTTCTTTT  897

seq1  TCTTTTTCTTTTTCTTTTTCTTTTTTGGTTTTTCAAGACAGGGTTTCTCT  950
         |||||||||   ||||||||||    |||||||||||||| ||||||
seq2  --CTTTTCTTTT--CTTTTCTTTTT---GTTTTCAAGACAGGG-TTCTCT  939

seq1  GTGTAGCCCAGGCTGTCCTTGAACTCTGAAATCAGCCTGCCTCTGCCTCC  1000
      |||||| ||||||||||| ||||||||| |||||| ||||||||||||||
seq2  GTGTAG-CCAGGCTGTCC-TGAACTCTG-AATCAG-CTGCCTCTGCCTCC  985

seq1  CAAGGGCTGGGATTCAAGGCGTGCGCCACCACTGGAAAAACCAAAAAGAA  1050
        | |||| ||| ||||||||||||||||||||||||||    ||| |||
seq2  --AAGGCT-GGAATCAAGGCGTGCGCCACCACTGGAAAA---CAAAGGAA  1029

seq1  AAAAAAAAAAGAGGAAGAAGAGGAAGAAGTTCAGCTTTCTCGGCTTGCCC  1100
      ||||||| | |||     ||| | ||||||||||| ||||| ||||| ||
seq2  AAAAAAAGAGGAG-----AGAAGGAGAAGTTCAGC-TTCTC-GCTTG-CC  1071

seq1  TGTCATGTATCACACTGGTCTGGAACTG  1128
      |||||||||||||||||    |||||||
seq2  TGTCATGTATCACACTG---CGGAACTG  1096