BAC Information

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BAC

Clone NameB6Ng01-167K17
Chromosome19 (Build37)
Map Location 55,163,329 - 55,164,491
singlet/doubletsinglet
Overlap geneGpam
Upstream geneLOC100043004
Downstream geneTectb, Gucy2g, Acsl5, Zdhhc6, Vti1a, LOC100043479, Tcf7l2, Ppnr, LOC100043484
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167K17.bB6Ng01-167K17.g
ACCDH959101DH959102
length1,168531
definitionDH959101|Mus musculus domesticus DNA, BAC clone: B6Ng01-167K17, 5' end.DH959102|Mus musculus domesticus DNA, BAC clone: B6Ng01-167K17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcataatgtctgtttgtagctttgtggagagctatggctctaaccc
caacagtgttggacactgtaagaactcaggaaaacatgttacacgaacga
ctgaatagttgacagtagcgacatcatattagatacctagagaagcatca
taggcccatgccgtaagtgcggtggcggtgggacgagccttttctgccgc
acattcttacggctcagtgtcgagctctgcctttgtaaaatgactggttg
gttcagaaggagaaaataaaaagtaaacaccacgtctgtcttagtgcttc
ttagggctttgcatgcagttctggtgaggtgcaatataagcaagtggcag
attatgatggctaaaggaaagccatgtatcactctgactttctggtggca
gtttgttttaccttgtttattatactgggttacatactagatggcacaat
ccattttcatgaagtctgcgtgttctttgagtatgtgctccattgtgagt
tatgtacacaggacggccttcgcccccctggctttgctaaagtgtaactg
actggggcattcagtcccgcagcagtcactcagagtgaattcttagatat
ggccagatttctaaggagcctttggcttaggatgcccctccattggaaag
gtgttattactgttatttatgtatgtttgtaggagtgtgcgtctctatag
gaggaggctataggaatgtccaatcccttggagccgttgtgagctgcctg
ttgtaggtgctgggaatcaaactcgggtcatcttcaagaatagtacatac
tcctgaccactgaaccgtctctcctggctctgcccatcagttttgataga
caaccctggctgatggtcccaacttgtattttctctctggctgctatact
ataaatgaaagagaacatgcattttctgcatactaaagataacgaacatt
ctattctgttttccaacatattcatgtatagcttgtagtttgggaaatac
cagtatgtcctgttacatggagtctgtttcaattgtctgactttcattgt
tgaaatcagagtccaggaggcaatttgctgaagttggcctgcgggagtga
cccagatggatctggcccgcagcgttccaagccatctaaaaaggtgtgaa
aggaaagccaggaagatc

ccatcaaaacccaaacacaattcttcacagaccttgaaagaccacttctt
aacttcatatgtaaaaacaaaacactcaagatagctaaaatagttctgtg
caatatagaccttctagaggtatcaccacccctgatttcaagctgtatta
cagagcaatagtaataaaaactctttgaatagtactggcagaaaatcaga
caaggtaatcgatggaaacaaatcaaagaactagaggtaaatccacatac
ttatggcacttgatttttgacaaagaagccaaatctataaatgagaggga
gagaagagagagagagagagagagagagagagagagagagagagagagag
agagagagagagagagagaaggcaggcaaggaaggaaggaaggaaggaag
gaaggaaggaaggaaggaaggaaagatttttttgttagattttttgaatg
aaaaatacagaaagaaagcatcttcaaccattggtgctgggctaactggt
tctcctcatgtagaagatgcaaataaacctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_55163329_55164491
seq2: B6Ng01-167K17.b_49_1216 (reverse)

seq1  GATCTTCCTGGCTTTCCTTT-TCACC-TTCTGGATGGCTTTGGACTGCTG  48
      ||||||||||||||||||||  |||| || | |||||| |||||  ||||
seq2  GATCTTCCTGGCTTTCCTTTCACACCTTTTTAGATGGC-TTGGAACGCTG  49

seq1  CTGGGCAGATCCATCTGGGTTCAACTCCGCAG--CCACTTCAGC-AATTG  95
      | || |||||||||||||| |||   ||||||  | |||||||| |||||
seq2  CGGGCCAGATCCATCTGGG-TCACTCCCGCAGGCCAACTTCAGCAAATTG  98

seq1  CCTCTTGGACTCTGATTTCAAC-ATGAAAGTCAGACAA-TGAAACAGACT  143
      |||| ||||||||||||||||| ||||||||||||||| |||||||||||
seq2  CCTCCTGGACTCTGATTTCAACAATGAAAGTCAGACAATTGAAACAGACT  148

seq1  CCATGTAACAGGACATACTGGTATTTCCCAAACTAC-AGCTATACATGAA  192
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCATGTAACAGGACATACTGGTATTTCCCAAACTACAAGCTATACATGAA  198

seq1  TATGTTGGAAAAACAGAATAGAATGTTCGTTATCTTTAGTATGCAGAAAA  242
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTGG-AAAACAGAATAGAATGTTCGTTATCTTTAGTATGCAGAAAA  247

seq1  TGCATGTTCTCTTTCATTTATAGTATAGCAGCCAGAGAGAAAATACAAGT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTTCTCTTTCATTTATAGTATAGCAGCCAGAGAGAAAATACAAGT  297

seq1  TGGGACCATCAGCCAGGGTTGTCTATCAAAACTGATGGGCAGAGCCAGGA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACCATCAGCCAGGGTTGTCTATCAAAACTGATGGGCAGAGCCAGGA  347

seq1  GAGACGGTTCAGTGGTCAGGAGTATGTACTATTCTTGAAGATGACCCGAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACGGTTCAGTGGTCAGGAGTATGTACTATTCTTGAAGATGACCCGAG  397

seq1  TTTGATTCCCAGCACCTACAACAGGCAGCTCACAACGGCTCCAAGGGATT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTCCCAGCACCTACAACAGGCAGCTCACAACGGCTCCAAGGGATT  447

seq1  GGACATTCCTATAGCCTCCTCCTATAGAGACGCACACTCCTACAAACATA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTCCTATAGCCTCCTCCTATAGAGACGCACACTCCTACAAACATA  497

seq1  CATAAATAACAGTAATAACACCTTTCCAATGGAGGGGCATCCTAAGCCAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATAACAGTAATAACACCTTTCCAATGGAGGGGCATCCTAAGCCAA  547

seq1  AGGCTCCTTAGAAATCTGGCCATATCTAAGAATTCACTCTGAGTGACTGC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCCTTAGAAATCTGGCCATATCTAAGAATTCACTCTGAGTGACTGC  597

seq1  TGCGGGACTGAATGCCCCAGTCAGTTACACTTTAGCAAAGCCAGGGGGGC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGGACTGAATGCCCCAGTCAGTTACACTTTAGCAAAGCCAGGGGGGC  647

seq1  GAAGGCCGTCCTGTGTACATAACTCACAATGGAGCACATACTCAAAGAAC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCCGTCCTGTGTACATAACTCACAATGGAGCACATACTCAAAGAAC  697

seq1  ACGCAGACTTCATGAAAATGGATTGTGCCATCTAGTATGTAACCCAGTAT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCAGACTTCATGAAAATGGATTGTGCCATCTAGTATGTAACCCAGTAT  747

seq1  AATAAACAAGGTAAAACAAACTGCCACCAGAAAGTCAGAGTGATACATGG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACAAGGTAAAACAAACTGCCACCAGAAAGTCAGAGTGATACATGG  797

seq1  CTTTCCTTTAGCCATCATAATCTGCCACTTGCTTATATTGCACCTCACCA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTTAGCCATCATAATCTGCCACTTGCTTATATTGCACCTCACCA  847

seq1  GAACTGCATGCAAAGCCCTAAGAAGCACTAAGACAGACGTGGTGTTTACT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGCATGCAAAGCCCTAAGAAGCACTAAGACAGACGTGGTGTTTACT  897

seq1  TTTTATTTTCTCCTTCTGAACCAACCAGTCATTTTACAAAGGCAGAGCTC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTCTCCTTCTGAACCAACCAGTCATTTTACAAAGGCAGAGCTC  947

seq1  GACACTGAGCCGTAAGAATGTGCGGCAGAAAAGGCTCGTCCCACCGCCAC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGAGCCGTAAGAATGTGCGGCAGAAAAGGCTCGTCCCACCGCCAC  997

seq1  CGCACTTACGGCATGGGCCTATGATGCTTCTCTAGGTATCTAATATGATG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACTTACGGCATGGGCCTATGATGCTTCTCTAGGTATCTAATATGATG  1047

seq1  TCGCTACTGTCAACTATTCAGTCGTTCGTGTAACATGTTTTCCTGAGTTC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTACTGTCAACTATTCAGTCGTTCGTGTAACATGTTTTCCTGAGTTC  1097

seq1  TTACAGTGTCCAACACTGTTGGGGTTAGAGCCATAGCTCTCCACAAAGCT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTGTCCAACACTGTTGGGGTTAGAGCCATAGCTCTCCACAAAGCT  1147

seq1  ACAAACAGACATTATGAATTC  1163
      |||||||||||||||||||||
seq2  ACAAACAGACATTATGAATTC  1168


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