BAC Information

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BAC

Clone NameB6Ng01-170F22
Chromosome19 (Build37)
Map Location 21,278,364 - 21,384,446
singlet/doubletdoublet
Overlap geneLOC100041602, LOC100041613, Zfand5
Upstream geneLOC100041541, Anxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549, Aldh1a1, Aldh1a7, Tmc1, LOC100042287, LOC100042294
Downstream geneGda, LOC100041633, 1110059E24Rik, 5730446C15Rik, Tmem2, EG433229, Trpm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170F22.bB6Ng01-170F22.g
ACCDH961101DH961102
length1,0961,077
definitionDH961101|Mus musculus domesticus DNA, BAC clone: B6Ng01-170F22, 5' end.DH961102|Mus musculus domesticus DNA, BAC clone: B6Ng01-170F22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,278,364 - 21,279,466)(21,383,358 - 21,384,446)
sequence
gaattcatcatgagttagagtaataaaagagaaaagaaaatgtgctacca
ctataattttcaagttgtcacaaaactaggaatttgtcagttcagtggat
ttctctagctttcaaaatgtctgctaatcgggccctagggactcttgaga
aaacatctgtgtctagctgtctaaagtgacactttttaataaaggactag
agaggaaagtctctgctttcatggatcgcctcaagaaaaggactaaaaag
atggctccgtgcttaacagtacttgttgatgttgcagagtacctgggtac
cacttccacaacttccacagaaaagcaactgaaaggcatttaggaaaaga
acaaagctgggtgcccattggaatgagcctttctacagtttctacctgcc
ctagacattacactgattgtttccaactatgaataaatgttcaaagtcat
tagtagagtaagctacactaaacaggcagcaggcaaggcttgggcatgag
gagaagttggtccatcctctccatagacagcgaaccttaacctcagtgaa
caaggtaaactttaacttctggaatataatctctaaatgtagaggggaaa
gacaagacatttctgaaaagaaggtatgtaagtagccataagatatgtgg
gaaaaaatgttcagtatcactaatcatcagggaaatcaaaaccataagat
actacctcagtccagctgaaatggctctgtcacaaaagcaaaaaaataat
aatgaacactgagaagacgttaaaaaaaaccagaagactcttctgcactg
ttggagggattggaagtgaactaagtcagcatggaaagcagtatgcaagg
ttctttgacaaactgaagaaatgtactaaggtttgagccagcagtctaac
ttctcagtcacaaaggataaggaggcagagtgtcaaaagacattacatgc
tcatggtcattgcagtacagttcacatagtcagacagagcagctacctga
gtatgagtcattgtcatagtgtcgtcatcgtcatcgtcatcacatcatcg
ctgtcatcaactgacaaccgatgtggaaaacgaagtatgtacccac
gaattcccaagctacattcttgtaaggatactgacccagggcagcatggg
ttgtcagagccttagctgctgaaacctgcattaaagccgggagttatggc
tttaacgcactgccactccttccttcttttttactagatgtaacactgtc
atttcattaacttttgacaaacgatatagaggcccaaagtaagaatacaa
ataaaaataagaatgtctgagcctggagaggctcagtgactaagagcaat
tgtcactcttgcagaggggctcagctcagttcccagttcagttcccagcg
cccacaaggtggctcacaaccattagtaacaccatcttctggccctctag
ggcaccaggcacacacatggcacacctccacccacacaagcaaaataaac
acaataaataaataaataaataaataaataaataaataaatacatactaa
aaaagttcaaagctcgcatgaacaaatccactattaaaaataatttacaa
aagaaaaaaatagtttcagagaagaggaatttttacataaatgaaattaa
gatatttttcccctctgtgttttggtccaggctgtttgataaccccagcc
caggaagatgtggtcagcatcctttcatcgccctctggtctccactccta
ctgtcttctagaagcattcattatctcaataaatttcagaggatattaaa
gcattgttattctggtgattctactgtgacctctttgtttctgaagtcac
tcctttgcttcaaagatgacacactagcgagcatactaatgttctctact
gttgccttatccaggtcccacagcccccacgtgccaactttgagaaacca
gaatgtatgatatcattaagagaaagtaacctgatagatgcatgcgtgga
aaggtcacggtgaaatctattaaatgtgatattaatgtgcactataatta
tagctaaaagaattatctactgaaaaaaaagagagtagcagcattgaaca
agattgtgaaaaatagtcaacaattcttacccctactacccatccctttt
attagtattttaagttttcctatcact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_21278364_21279466
seq2: B6Ng01-170F22.b_49_1144

seq1  GAATTCATCATGAGTTAGAGTAATAAAAGAGAAAAGAAAATGTGCTACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCATGAGTTAGAGTAATAAAAGAGAAAAGAAAATGTGCTACCA  50

seq1  CTATAATTTTCAAGTTGTCACAAAACTAGGAATTTGTCAGTTCAGTGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATTTTCAAGTTGTCACAAAACTAGGAATTTGTCAGTTCAGTGGAT  100

seq1  TTCTCTAGCTTTCAAAATGTCTGCTAATCGGGCCCTAGGGACTCTTGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAGCTTTCAAAATGTCTGCTAATCGGGCCCTAGGGACTCTTGAGA  150

seq1  AAACATCTGTGTCTAGCTGTCTAAAGTGACACTTTTTAATAAAGGACTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCTGTGTCTAGCTGTCTAAAGTGACACTTTTTAATAAAGGACTAG  200

seq1  AGAGGAAAGTCTCTGCTTTCATGGATCGCCTCAAGAAAAGGACTAAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAAGTCTCTGCTTTCATGGATCGCCTCAAGAAAAGGACTAAAAAG  250

seq1  ATGGCTCCGTGCTTAACAGTACTTGTTGATGTTGCAGAGTACCTGGGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCCGTGCTTAACAGTACTTGTTGATGTTGCAGAGTACCTGGGTAC  300

seq1  CACTTCCACAACTTCCACAGAAAAGCAACTGAAAGGCATTTAGGAAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCACAACTTCCACAGAAAAGCAACTGAAAGGCATTTAGGAAAAGA  350

seq1  ACAAAGCTGGGTGCCCATTGGAATGAGCCTTTCTACAGTTTCTACCTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCTGGGTGCCCATTGGAATGAGCCTTTCTACAGTTTCTACCTGCC  400

seq1  CTAGACATTACACTGATTGTTTCCAACTATGAATAAATGTTCAAAGTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACATTACACTGATTGTTTCCAACTATGAATAAATGTTCAAAGTCAT  450

seq1  TAGTAGAGTAAGCTACACTAAACAGGCAGCAGGCAAGGCTTGGGCATGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGAGTAAGCTACACTAAACAGGCAGCAGGCAAGGCTTGGGCATGAG  500

seq1  GAGAAGTTGGTCCATCCTCTCCATAGACAGCGAACCTTAACCTCAGTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTTGGTCCATCCTCTCCATAGACAGCGAACCTTAACCTCAGTGAA  550

seq1  CAAGGTAAACTTTAACTTCTGGAATATAATCTCTAAATGTAGAGGGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTAAACTTTAACTTCTGGAATATAATCTCTAAATGTAGAGGGGAAA  600

seq1  GACAAGACATTTCTGAAAAGAAGGTATGTAAGTAGCCATAAGATATGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGACATTTCTGAAAAGAAGGTATGTAAGTAGCCATAAGATATGTGG  650

seq1  GAAAAAATGTTCAGTATCACTAATCATCAGGGAAATCAAAACCATAAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAATGTTCAGTATCACTAATCATCAGGGAAATCAAAACCATAAGAT  700

seq1  ACTACCTCAGTCCAGCTGAAATGGCTCTGTCACAAAAGCAAAAAAATAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCTCAGTCCAGCTGAAATGGCTCTGTCACAAAAGCAAAAAAATAAT  750

seq1  AATGAACACTGAGAAGACGTTAAAAAAAACCAGAAGACTCTTCTGCACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACACTGAGAAGACGTTAAAAAAAACCAGAAGACTCTTCTGCACTG  800

seq1  TTGGAGGGATTGGAAGTGAACTAAGTCAGCATGGAAAGCAGTATGCAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGGATTGGAAGTGAACTAAGTCAGCATGGAAAGCAGTATGCAAGG  850

seq1  TTCTTTGACAAACTGAAGAAATGTACTAAGGTTTGAGCCAGCAGTCTAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGACAAACTGAAGAAATGTACTAAGGTTTGAGCCAGCAGTCTAAC  900

seq1  TTCTCAGTCACAAAGGATAAGGAGGCAGAGTGTCAAAAAGACATTACATG  950
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTCTCAGTCACAAAGGATAAGGAGGCAGAGTGTC-AAAAGACATTACATG  949

seq1  CTCATGGTCATTGCAGTACAGTTCACAATAGTCAAGACAGAGCAGCTACC  1000
      |||||||||||||||||||||||||| |||||| ||||||||||||||||
seq2  CTCATGGTCATTGCAGTACAGTTCAC-ATAGTC-AGACAGAGCAGCTACC  997

seq1  TGAGTATGAAGTCATTGTCATAGTTGTCGTCATCGTCATCGTCATCACCA  1050
      |||||||| |||||||||||||| ||||||||||||||||||||||| ||
seq2  TGAGTATG-AGTCATTGTCATAG-TGTCGTCATCGTCATCGTCATCA-CA  1044

seq1  TCATCGCTGTCATCAACTGACAAACGGATGTGGAAAACGAGGTATGTACC  1100
      ||||||||||||||||||||| ||| |||||||||||||| |||||||||
seq2  TCATCGCTGTCATCAACTGAC-AACCGATGTGGAAAACGAAGTATGTACC  1093

seq1  CAC  1103
      |||
seq2  CAC  1096

seq1: chr19_21383358_21384446
seq2: B6Ng01-170F22.g_68_1144 (reverse)

seq1  AGTGATAGGAAATACTTTAAAATACTTAATAAAAGGGATGGGTAGTAGGG  50
      |||||||||||| || ||||||||| ||||||||||||||||||||||||
seq2  AGTGATAGGAAA-AC-TTAAAATAC-TAATAAAAGGGATGGGTAGTAGGG  47

seq1  GTAAGAATTTGTTGACTA-TTTTCACCAAATCTTTGTTTCAATGCTGCTA  99
      ||||||| |||||||||| |||||||  ||||||   |||||||||||||
seq2  GTAAGAA-TTGTTGACTATTTTTCAC--AATCTT--GTTCAATGCTGCTA  92

seq1  CTCTCTTTTTTTTTTCAGTAGATAATTCTTTTAGCTATAATTATTAGTGC  149
      |||||  |||||||||||||||||||||||||||||||||||| ||||||
seq2  CTCTC--TTTTTTTTCAGTAGATAATTCTTTTAGCTATAATTA-TAGTGC  139

seq1  ACATTAATATTCACATTTTAATAGATTTCACCGTGACCTTTCCACGCATG  199
      ||||||||| ||||| ||||||||||||||||||||||||||||||||||
seq2  ACATTAATA-TCACA-TTTAATAGATTTCACCGTGACCTTTCCACGCATG  187

seq1  CATCTATCAGGTTACTTTCTCTTAATGATATCATACATTCTGGTTTCTCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATCAGGTTACTTTCTCTTAATGATATCATACATTCTGGTTTCTCA  237

seq1  AAGTTGGCACGTGGGGGCTGTGGGACCTGGATAAGGCAACAGTAGAGAAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGGCACGTGGGGGCTGTGGGACCTGGATAAGGCAACAGTAGAGAAC  287

seq1  ATTAGTATGCTCGCTAGTGTGTCATCTTTGAAGCAAAGGAGTGACTTCAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTATGCTCGCTAGTGTGTCATCTTTGAAGCAAAGGAGTGACTTCAG  337

seq1  AAACAAAGAGGTCACAGTAGAATCACCAGAATAACAATGCTTTAATATCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGAGGTCACAGTAGAATCACCAGAATAACAATGCTTTAATATCC  387

seq1  TCTGAAATTTATTGAGATAATGAATGCTTCTAGAAGACAGTAGGAGTGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAATTTATTGAGATAATGAATGCTTCTAGAAGACAGTAGGAGTGGA  437

seq1  GACCAGAGGGCGATGAAAGGATGCTGACCACATCTTCCTGGGCTGGGGTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGAGGGCGATGAAAGGATGCTGACCACATCTTCCTGGGCTGGGGTT  487

seq1  ATCAAACAGCCTGGACCAAAACACAGAGGGGAAAAATATCTTAATTTCAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAACAGCCTGGACCAAAACACAGAGGGGAAAAATATCTTAATTTCAT  537

seq1  TTATGTAAAAATTCCTCTTCTCTGAAACTATTTTTTTCTTTTGTAAATTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTAAAAATTCCTCTTCTCTGAAACTATTTTTTTCTTTTGTAAATTA  587

seq1  TTTTTAATAGTGGATTTGTTCATGCGAGCTTTGAACTTTTTTAGTATGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATAGTGGATTTGTTCATGCGAGCTTTGAACTTTTTTAGTATGTA  637

seq1  TTTATTTATTTATTTATTTATTTATTTATTTATTTATTGTGTTTATTTTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTTATTTATTTATTTATTTATTTATTTATTGTGTTTATTTTG  687

seq1  CTTGTGTGGGTGGAGGTGTGCCATGTGTGTGCCTGGTGCCCTAGAGGGCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTGGGTGGAGGTGTGCCATGTGTGTGCCTGGTGCCCTAGAGGGCC  737

seq1  AGAAGATGGTGTTACTAATGGTTGTGAGCCACCTTGTGGGCGCTGGGAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATGGTGTTACTAATGGTTGTGAGCCACCTTGTGGGCGCTGGGAAC  787

seq1  TGAACTGGGAACTGAGCTGAGCCCCTCTGCAAGAGTGACAATTGCTCTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTGGGAACTGAGCTGAGCCCCTCTGCAAGAGTGACAATTGCTCTTA  837

seq1  GTCACTGAGCCTCTCCAGGCTCAGACATTCTTATTTTTATTTGTATTCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGAGCCTCTCCAGGCTCAGACATTCTTATTTTTATTTGTATTCTT  887

seq1  ACTTTGGGCCTCTATATCGTTTGTCAAAAGTTAATGAAATGACAGTGTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGGCCTCTATATCGTTTGTCAAAAGTTAATGAAATGACAGTGTTA  937

seq1  CATCTAGTAAAAAAGAAGGAAGGAGTGGCAGTGCGTTAAAGCCATAACTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAGTAAAAAAGAAGGAAGGAGTGGCAGTGCGTTAAAGCCATAACTC  987

seq1  CCGGCTTTAATGCAGGTTTCAGCAGCTAAGGCTCTGACAACCCATGCTGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCTTTAATGCAGGTTTCAGCAGCTAAGGCTCTGACAACCCATGCTGC  1037

seq1  CCTGGGTCAGTATCCTTACAAGAATGTAGCTTGGGAATTC  1089
      ||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTCAGTATCCTTACAAGAATGTAGCTTGGGAATTC  1077