BAC Information

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BAC

Clone NameB6Ng01-171C17
Chromosome19 (Build37)
Map Location 18,077,399 - 18,078,578
singlet/doubletsinglet
Overlap genenone
Upstream geneA230083H22Rik, Gcnt1, Rfk, Pcsk5, Eef1a1-ps1
Downstream geneLOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6, Rorb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171C17.bB6Ng01-171C17.g
ACCGA000123GA000124
length1,1421,167
definitionB6Ng01-171C17.b B6Ng01-171C17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattctgcagtagtgcaggctggccacacactcagatactggctg
ctcctgcctcctgagtgacaggattaaaggtgtgagccatcactgccagg
catgtttttgttttgttttgttttttaagctgtctgatttgtggtaattt
gttatagaaatccaagggattatatataaattgcactgcaggcttacagt
tgaggaatggctactaatgtttcccaactgagaagcatcataacttatag
tttgggcttgggctacaagtaagattaggataaaggaaggctcacagaat
ataagggttcattgcagagagaataaataagaaggacttagcaacattag
ggcaatgcttaagttactttacatgaagcaattttttggtagagatttac
cgtagcacctgaactagctatttttctcattactttgacaaaatacctta
ccaagaaggaagagtttattttgggtcaaagttgctaagttacagtccac
caaattaggaagacatagtggaagggctggcagggagggggtcattctac
attgacagtcaggcaggcagaaaagacagcccactttgtccttttcatta
gccagagtgtccagtccatgagatggtgcttcccaaggttaaggtgatcc
tgtaaacatcgcttaacctgatctagataatcttcacaggcatacctaga
ggctaaactaacctgggtaacctctcacaggtgtgcagagagttttgttt
cctgggtggtcccatatccatccaagttagcgtttggtgataatcatccc
agacaactctctatgtataggtaatgtgtaatatacagcatccaaagggt
aaaatttgtgagaaccagtgtctgaatatggcctttcttacatcactgtg
tctaaatgtacagtctttctagaataagatttataggagctcagttagga
aagcagcatctgaaagagatgtcagatggatgaggcggagaagagaaatt
agtagaaggagagatgtggaaactcacagtcatgttgcttaagttagctc
aggagatgcatcgcaattcaaacaatgaaagaacctcagtacctgctagt
tctggaatccttagacgttagatactcagtggtgtcaatgtc
gaattctgtttatctctgtcccccattttaaaaatagggttatttggttc
tctggagtctaacttcttgagttctttgcatatattggatattatccctc
tatcagatgtaggattggtaaagatcctttaccaatttgctacatgccat
tttttcctattgaaagcgtcccttgccttacagaagctttgtaattttgt
gaggtcccatttgtccattcttggtcttagagcataagccactagtgttc
tgttcaggaaaatttcccctgtgcccatgtgttccaggcttttccccact
ttcttttctactagattcagtgtatctgattttatttggaggtccttgat
ccacttggacttgagctttgtacagggaaataaggatggatcaatttgca
ttcttctacatgttcaccaccagttgaaccagcatcattcattgaaaatg
ctgtctttttccactggatagttttaacttctttgtcaaagatcaagtaa
ccataggtgtgtgggttcatttctgggtcttcaagtctattccattgatc
tacttgcctgtcattgtaccaataccatgcagtttttatcactattgctc
tgtagtacagcttgatgtcagagatggtgattcccccagatgttctatta
ttattgagaatagttttcactatcctgtggggtttttttttttttgttgt
tatttcaaatgaatttgagaattactctttctaactctatgtagaattga
gttagaatgttgacagggattgcattgaatctgtagattgcttttgccca
gatgggccatttttactatattaaacctgccaatccatgagcatgggaga
tctttccatctttctgaggtttttcttgtatttcttttttgagggacttg
aagttcttctagtaccaatctttttacttgtttggtgagagtcacacaag
aacaatttaaatagatatttgtgactattgtgatggtgtcatttccctaa
tttcttcccagaccattaatctttaactgattgagttacgtaatatgcag
ctacgtctcctattaaaccttgggtcacttaaagattccatacatccagc
tgcaaagtgaacttttgaccatcttccatgactacttgcgtccaatggct
cagcgatcatcagtatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_18077399_18078578
seq2: B6Ng01-171C17.b_34_1175

seq1  GAATTCATTCTGCAGTAGTGCAGGCTGGCCACACACTCAGATACTGGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTGCAGTAGTGCAGGCTGGCCACACACTCAGATACTGGCTG  50

seq1  CTCCTGCCTCCTGAGTGACAGGATTAAAGGTGTGAGCCATCACTGCCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCCTCCTGAGTGACAGGATTAAAGGTGTGAGCCATCACTGCCAGG  100

seq1  CATGTTTTTGTTTTGTTTTGTTTTTTAAGCTGTCTGATTTGTGGTAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTTTGTTTTGTTTTGTTTTTTAAGCTGTCTGATTTGTGGTAATTT  150

seq1  GTTATAGAAATCCAAGGGATTATATATAAATTGCACTGCAGGCTTACAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAGAAATCCAAGGGATTATATATAAATTGCACTGCAGGCTTACAGT  200

seq1  TGAGGAATGGCTACTAATGTTTCCCAACTGAGAAGCATCATAACTTATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAATGGCTACTAATGTTTCCCAACTGAGAAGCATCATAACTTATAG  250

seq1  TTTGGGCTTGGGCTACAAGTAAGATTAGGATAAAGGAAGGCTCACAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGCTTGGGCTACAAGTAAGATTAGGATAAAGGAAGGCTCACAGAAT  300

seq1  ATAAGGGTTCATTGCAGAGAGAATAAATAAGAAGGACTTAGCAACATTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGGTTCATTGCAGAGAGAATAAATAAGAAGGACTTAGCAACATTAG  350

seq1  GGCAATGCTTAAGTTACTTTACATGAAGCAATTTTTTGGTAGAGATTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATGCTTAAGTTACTTTACATGAAGCAATTTTTTGGTAGAGATTTAC  400

seq1  CGTAGCACCTGAACTAGCTATTTTTCTCATTACTTTGACAAAATACCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGCACCTGAACTAGCTATTTTTCTCATTACTTTGACAAAATACCTTA  450

seq1  CCAAGAAGGAAGAGTTTATTTTGGGTCAAAGTTGCTAAGTTACAGTCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAAGGAAGAGTTTATTTTGGGTCAAAGTTGCTAAGTTACAGTCCAC  500

seq1  CAAATTAGGAAGACATAGTGGAAGGGCTGGCAGGGAGGGGGTCATTCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTAGGAAGACATAGTGGAAGGGCTGGCAGGGAGGGGGTCATTCTAC  550

seq1  ATTGACAGTCAGGCAGGCAGAAAAGACAGCCCACTTTGTCCTTTTCATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACAGTCAGGCAGGCAGAAAAGACAGCCCACTTTGTCCTTTTCATTA  600

seq1  GCCAGAGTGTCCAGTCCATGAGATGGTGCTTCCCAAGGTTAAGGTGATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGTGTCCAGTCCATGAGATGGTGCTTCCCAAGGTTAAGGTGATCC  650

seq1  TGTAAACATCGCTTAACCTGATCTAGATAATCTTCACAGGCATACCTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAACATCGCTTAACCTGATCTAGATAATCTTCACAGGCATACCTAGA  700

seq1  GGCTAAACTAACCTGGGTAACCTCTCACAGGTGTGCAGAGAGTTTTGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAACTAACCTGGGTAACCTCTCACAGGTGTGCAGAGAGTTTTGTTT  750

seq1  CCTGGGTGGTCCCATATCCATCCAAGTTAGCGTTTGGTGATAATCATCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTGGTCCCATATCCATCCAAGTTAGCGTTTGGTGATAATCATCCC  800

seq1  AGACAACTCTCTATGTATAGGTAATGTGTAATATACAGCATCCAAAGGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACTCTCTATGTATAGGTAATGTGTAATATACAGCATCCAAAGGGT  850

seq1  AAAA-TTGTGAGAACCAGTGTCTGAAATATGGCCTTTCTTACATCACTGT  899
      |||| ||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAAATTTGTGAGAACCAGTGTCTG-AATATGGCCTTTCTTACATCACTGT  899

seq1  GTCTAAATGTACAGTCTTTCTAAGATAAAGATTTATAAGAGCCCAGTTAG  949
      ||||||||||||||||||||| |||  |||||||||| |||| |||||||
seq2  GTCTAAATGTACAGTCTTTCT-AGAATAAGATTTATAGGAGCTCAGTTAG  948

seq1  GAAAGCAGCATCCTGGAAAAGAGGAAGGCCAAGATGAAGGGAGGCGGGAA  999
      ||||||||||| |||  ||||||  | | | ||||| |  |||||||  |
seq2  GAAAGCAGCAT-CTG--AAAGAG--ATGTC-AGATGGA-TGAGGCGG--A  989

seq1  GAAGGGAGAAAATTAGTAGAGGAAGAGATTGTGGAAAACTCACAGTTCAT  1049
      |||| |   ||||||||||| | ||||| ||||| |||||||||| ||||
seq2  GAAGAG---AAATTAGTAGAAGGAGAGA-TGTGG-AAACTCACAG-TCAT  1033

seq1  GTGGCTTAAAGTTTTAGCTCAAAGAGTATGCATCTGGCAATCCAAAACAA  1099
      || ||||||    ||||||| | ||| |||||||  ||||| | ||||||
seq2  GTTGCTTAA---GTTAGCTC-AGGAG-ATGCATC--GCAATTC-AAACAA  1075

seq1  TTGAGAGGAACTCCAGTACCTTGTCTAGTTCTTGGATACCATAAGACAGT  1149
       ||| | ||||  ||||||||   |||||||| | ||  | | ||||   
seq2  -TGA-AAGAACCTCAGTACCT--GCTAGTTCTGGAAT--CCTTAGAC---  1116

seq1  GTATAGTATCATCAATGTGTGTGTCAATGTC  1180
      || ||| ||  ||| ||   |||||||||||
seq2  GT-TAG-ATACTCAGTG---GTGTCAATGTC  1142