BAC Information

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BAC

Clone NameB6Ng01-172F06
Chromosome19 (Build37)
Map Location 24,333,064 - 24,420,006
singlet/doubletdoublet
Overlap geneFxn, LOC667743, Pip5k1b, LOC100042457
Upstream geneSmc5, Mamdc2, 1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1, Apba1, Gm967, 1700021P04Rik, Tjp2
Downstream gene2900009I07Rik, E030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1, Dock8, LOC100042503, Ankrd15, LOC433233
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172F06.bB6Ng01-172F06.g
ACCGA000976GA000977
length754735
definitionB6Ng01-172F06.b B6Ng01-172F06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,419,257 - 24,420,006)(24,333,064 - 24,333,798)
sequence
gaattcaaaggacgacctcatgtgcgccagttgtcatcttccgccttttt
tgtgacagtgtctctgttttcctgcctcataagcgaagttcattggccca
ggagctgccaagagtctcctgtctgcctccaagattgtggaagtagagat
gtacttgctttgtgtcaccttttacgtgctctggggagtcaaactcaggt
cctcacatttgcttgagtagcaaatgctttctatccagtgagccatgttc
atagctttttacccacctctgcctcctgtttttgagacaagggctcaatg
tagcacaagccagccttaaatttacattcatggtatgtgtcgttcattca
tcatactcatcagtactctcgaatatatatatatatatatatatatatat
atatatatatatatatatacatatattttatttatttatttatttattta
tttatttatttatttgctaattttgctatggattgaactcagggcctcac
cagcgctcagcaagctctctgtgactctgctacagatcccacgagcaaat
tcattaaaataacctctctaaatgcatattactcttgtatctacaaagac
acttcgtgaattgttttgtacgtgagacctctatgactaaggacaaaaga
aaggtatccatggtttttcctagctgccacatcttgtgagtccatgagaa
caacatgatcttttggccatgccaacgtttggtgattgtatcttgttgct
ctgc
gaattcaatgggatatgatttcctgttgctttggccttaccggatggaag
gtagtgagttcccttggcaaccctggatccccacaaagttcacccttaca
gacattgttttttctttagaggtggttaatgggtttaaattggggcaggt
gcaatgtaaaaaagattattacaaatggactatttaatgaaaatatcaaa
cttattaaacttagctctaacacatgtgcacgtgcacacacacacacaca
cacacacacacacacacacagaagctaggaacatagttcaacgacaaaac
attcagtgagcatgctaaggccctgagtccaatccccaccaccatacaaa
acaaatctagaataacaacaaaatagctttctagtgtttatagaccgaac
atggagcaatgtagctacaatgttgtctgtggtgactagactacggaatg
aggaaacactcccgggtcttaggcttgtgttgtggctcatggtgtggggt
ttattttcagcttgcttccataatatgagtttatcttttgtgtggctggc
ctagaacccactacttagacgaaggtgacttcaaactcgtgaaatcatcc
tgtctctgcctctgagtgctgggattaaaaatgttcgctacaatgactga
ctaggatatgagtcacacaggatcttgcaatgtggctcaggctggaatat
acaatgctcctatctctgcagttcaagctgagcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_24419257_24420006
seq2: B6Ng01-172F06.b_40_793 (reverse)

seq1  GCAGAGCAACAAGATACAACCACCAAACGTTAGC-TCGCC-AAAGACCAT  48
      ||||||||||||||||||| ||||||||||| || | ||| ||||| |||
seq2  GCAGAGCAACAAGATACAATCACCAAACGTTGGCATGGCCAAAAGATCAT  50

seq1  GCTGAACTC-TGGACTCAC-AGATGTGGCAGCTCTG-AAAGCCATGGATA  95
      | ||  ||| ||||||||| |||||||||||||  | ||| |||||||||
seq2  GTTGTTCTCATGGACTCACAAGATGTGGCAGCTAGGAAAAACCATGGATA  100

seq1  -CATTCTTTTTACCTTAGTCATTAAGGTCTCACGTACAAAACAATGCACG  144
       | |||||||  ||||||||||  ||||||||||||||||||||| ||||
seq2  CCTTTCTTTTGTCCTTAGTCATAGAGGTCTCACGTACAAAACAATTCACG  150

seq1  AAGTGTCTTTGTAGCTACATGAGTAATATGTATTTAGAGAGGTTATTTTA  194
      |||||||||||||| |||| |||||||||| |||||||||||||||||||
seq2  AAGTGTCTTTGTAGATACAAGAGTAATATGCATTTAGAGAGGTTATTTTA  200

seq1  ATGAATCTGCTCGTGGGATCTGTAGCAGAGTCACAGAGTGCTTGCTGAGC  244
      |||||| ||||||||||||||||||||||||||||||| |||||||||||
seq2  ATGAATTTGCTCGTGGGATCTGTAGCAGAGTCACAGAGAGCTTGCTGAGC  250

seq1  GCTGCTGAGGCCCTGAGTTCAATCCATAGCAATATTAGCAAATAAATAAA  294
      |||| ||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCTGGTGAGGCCCTGAGTTCAATCCATAGCAAAATTAGCAAATAAATAAA  300

seq1  TAAATAAATAAATAAATAAATAAATAAAATATATGTATATATATATATAT  344
      |||||||||||||||||||||||||||||||||||  |||||||||||||
seq2  TAAATAAATAAATAAATAAATAAATAAAATATATG--TATATATATATAT  348

seq1  ATATATATATATATATATATATATATATATATATTCGAGAGTACTGATGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATATATTCGAGAGTACTGATGA  398

seq1  GTATGATGAATGAACGACACATACCATGAATGTAAATTTAAGGCTGGCTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGATGAATGAACGACACATACCATGAATGTAAATTTAAGGCTGGCTT  448

seq1  GTGCTACATTGAGCCCTTGTCTCAAAAACAGGAGGCAGAGGTGGGTAAAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTACATTGAGCCCTTGTCTCAAAAACAGGAGGCAGAGGTGGGTAAAA  498

seq1  AGCTATGAACATGGCTCACTGGATAGAAAGCATTTGCTACTCAAGCAAAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATGAACATGGCTCACTGGATAGAAAGCATTTGCTACTCAAGCAAAT  548

seq1  GTGAGGACCTGAGTTTGACTCCCCAGAGCACGTAAAAGGTGACACAAAGC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGACCTGAGTTTGACTCCCCAGAGCACGTAAAAGGTGACACAAAGC  598

seq1  AAGTACATCTCTACTTCCACAATCTTGGAGGCAGACAGGAGACTCTTGGC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACATCTCTACTTCCACAATCTTGGAGGCAGACAGGAGACTCTTGGC  648

seq1  AGCTCCTGGGCCAATGAACTTCGCTTATGAGGCAGGAAAACAGAGACACT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTGGGCCAATGAACTTCGCTTATGAGGCAGGAAAACAGAGACACT  698

seq1  GTCACAAAAAAGGCGGAAGATGACAACTGGCGCACATGAGGTCGTCCTTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAAAAAAGGCGGAAGATGACAACTGGCGCACATGAGGTCGTCCTTT  748

seq1  GAATTC  750
      ||||||
seq2  GAATTC  754

seq1: chr19_24333064_24333798
seq2: B6Ng01-172F06.g_61_795

seq1  GAATTCAATGGGATATGATTTCCTGTTGCTTTGGCCTTACAGGATGGAAG  50
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GAATTCAATGGGATATGATTTCCTGTTGCTTTGGCCTTACCGGATGGAAG  50

seq1  GTAGTGAGTTCCCTTGGCAACCCTGGATCCCCACAAAGTTCACCCTTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGAGTTCCCTTGGCAACCCTGGATCCCCACAAAGTTCACCCTTACA  100

seq1  GACATTGTTTTTTCTTTAGAGGTGGTTAATGGGTTTAAATTGGGGCAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTGTTTTTTCTTTAGAGGTGGTTAATGGGTTTAAATTGGGGCAGGT  150

seq1  GCAATGTGAGAAGGCTTATTACAAAGTGACTATTTAATGAAAATATCAAA  200
      ||||||| | || | ||||||||||  |||||||||||||||||||||||
seq2  GCAATGTAAAAAAGATTATTACAAATGGACTATTTAATGAAAATATCAAA  200

seq1  CTTATTAGACTTAGCTCTAACACATGTGCACGTGCACACACACACACACA  250
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTAAACTTAGCTCTAACACATGTGCACGTGCACACACACACACACA  250

seq1  CACACACACACACACACACAGAAGCTAGGAACATAGTTCAACGACAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACAGAAGCTAGGAACATAGTTCAACGACAAAAC  300

seq1  ATTCAGTGAGCATGCTAAGGCCCTGAGTCCAATCCCCAGCACCAGAGAAA  350
      |||||||||||||||||||||||||||||||||||||| ||||| | |||
seq2  ATTCAGTGAGCATGCTAAGGCCCTGAGTCCAATCCCCACCACCATACAAA  350

seq1  ACAAATCTAGAATAACAACAAAATAGCTTTCTAGTGTTTATAGACCGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCTAGAATAACAACAAAATAGCTTTCTAGTGTTTATAGACCGAAC  400

seq1  ATGTAGCAATGTAGCTACAATGTTGTCTGTGGTGACTAGACTACGGAATG  450
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGCAATGTAGCTACAATGTTGTCTGTGGTGACTAGACTACGGAATG  450

seq1  AGGAAACACTCCCGGGTCTTAGGCTTGTGTTGTGGCTCATGGTGTGGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACACTCCCGGGTCTTAGGCTTGTGTTGTGGCTCATGGTGTGGGGT  500

seq1  TTATTTTCAGCTTGCTTCCAGAATATGAGTTTATCTTTTGTGTGGCTGGC  550
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTATTTTCAGCTTGCTTCCATAATATGAGTTTATCTTTTGTGTGGCTGGC  550

seq1  CTAGAACCCACTACTTAGACGAGGCTGACTTCAAACTCATGAGATCATCC  600
      |||||||||||||||||||||| | ||||||||||||| ||| |||||||
seq2  CTAGAACCCACTACTTAGACGAAGGTGACTTCAAACTCGTGAAATCATCC  600

seq1  TGTCTCTGCCTCTGAGTGCTGGGATTAAAGATGTGCGCTACCATGCCTGG  650
      ||||||||||||||||||||||||||||| |||| |||||| ||| ||| 
seq2  TGTCTCTGCCTCTGAGTGCTGGGATTAAAAATGTTCGCTACAATGACTGA  650

seq1  CTAGGATATGAGTCACACAGGGTCTTGTTATGTGGCTCAGGCTTGAATTT  700
      ||||||||||||||||||||| |||||  |||||||||||||| |||| |
seq2  CTAGGATATGAGTCACACAGGATCTTGCAATGTGGCTCAGGCTGGAATAT  700

seq1  TCGATGCTCCTATCTCTGCAGTTCAGTCTGAGCAG  735
       | ||||||||||||||||||||||  ||||||||
seq2  ACAATGCTCCTATCTCTGCAGTTCAAGCTGAGCAG  735