BAC Information

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BAC

Clone NameB6Ng01-172P03
Chromosome19 (Build37)
Map Location 48,750,446 - 48,852,993
singlet/doubletdoublet
Overlap geneSorcs3
Upstream geneCol17a1, 6330577E15Rik, D19Ertd652e, LOC677174, Gsto1, Gsto2, BC063749, Gm969, LOC670576
Downstream geneLOC100042896, LOC629448
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172P03.bB6Ng01-172P03.g
ACCGA001428GA001429
length9961,134
definitionB6Ng01-172P03.b B6Ng01-172P03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,852,366 - 48,852,993)(48,750,446 - 48,751,578)
sequence
gaattctgggaagaaataaatgctgtgtctcaactacattgttttcagaa
aaaaactacagctcctcaaaggccagtgctccctaaatcacaccaataat
gaagacccagcagtcaggcacggaagtctcaaactacagctcttagaaga
agagatacataaagaaaaataacatgatataaacaacaaaagtggtaaga
catagttccgaaacatctcaaagactatacggttacaaagaatgtgttat
gacataattaatgacttcagaaaaaaagcaaactttcctaagagaaaaaa
aaatacacttctaactttgcatcctggataattatcctgtaaaagtgaag
gagaaaaagaactttctcaaaccaaagggacctttcttatcagcaaatga
gctctgcaagaattgttaagttattttaaaggacagaaaataatgtggta
agaaactctgaaaaacatatagagcattcacagaaaaatgaagatatttt
gtttttccttttcattgttagcataacaaggaacattatcttcaaaacag
taacagtaactatgcatttgattccatgtgcttaaatgtgttgagtgacg
attgtgacagaagaggcaggggaggatttatgatcatcccattagtatta
ggtacacacatgactcatggataaagcttttaaaagtacatgtgatatgc
tagagaagagggaagatcagcgggggcattcatgaactcaagagcccgat
caactttatattattgcgtatatagagataactaaaattacagcagaata
tcaataatgttcaatcccacatagaacttttacctaggaaaagaatattc
tggaccattagacattcttaaacaaattggaaagactagatatcctgcca
tgctgcccttagactgtaatctgatcaagttatacccagcaacaaaaaga
taactagaaaatctacaaatactgggcattaaacaaaatactctaa

gaattctattagtggttaagtggagaagaggataaaggcttaaaacactg
agatttattttgaataactaagtggaataaatgagcaaaggacttgaaaa
aggtaattgtacgtcttaagggttcacatatccctttcccttctgtaggg
agtaagaaactatgctgagccatgtgatagtcagctgataggtttctacc
attgtggccatttgtctttatctataatattcaaattgtattggacccag
ctcagtctcctaactggaaaagcttcaaaatgtcattttctataagagca
atagtccttgtataaatcaaacttattcccattgtggtccttcttatgca
gagattctgatagcaacacctttcagtcatgggcaacaatggagcattgc
tttttcagggcctgagaagtggaaagggactccacaaagaaaggtcttca
ttgttggtgcacatcctgtctgcaaaattaaaagtagagtgatatgggat
ctatccctctccacagagaagttggggagtctcactcaatgattgttgta
agctttgaaaactataaatatcaagtttcaatctgagggttaccatttac
ttacttgtattttggagtatttgatataacttcattacatgtcattttta
ttcccaaaacataaaatagaaggctagtatgtacagatgagcagtacttg
acaccaatgtccagacatgttatccacttaatatctaacaatagttgtat
aattaaaaataataacattaacaaatattattatggatagtaaataatat
cacgaaagttaagcactcaaaaatatttgtttctgttctcatattccctg
tgtctgcttataaattcagaagttcaacagctggattcccagtgagggtc
aaggaagtaactcactgggctttgatttcagttttgggtatgcacaattt
ccctctgcacactagggaaagtctatccttcagaaacacaatgaatgaaa
aataaataataaaagatatgttcaagtttagcttggccacagccagaatg
gtaatagtcaaatggaacgatattattcaatgacgatacatttatccaag
ggtcattttacactgtcaggaccaattaacctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_48852366_48852993
seq2: B6Ng01-172P03.b_46_673 (reverse)

seq1  AATCCTCCCCTGCCTCTTCTGTCACAATCGTCACTCAACACATTTAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCCCCTGCCTCTTCTGTCACAATCGTCACTCAACACATTTAAGCA  50

seq1  CATGGAATCAAATGCATAGTTACTGTTACTGTTTTGAAGATAATGTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAATCAAATGCATAGTTACTGTTACTGTTTTGAAGATAATGTTCCT  100

seq1  TGTTATGCTAACAATGAAAAGGAAAAACAAAATATCTTCATTTTTCTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGCTAACAATGAAAAGGAAAAACAAAATATCTTCATTTTTCTGTG  150

seq1  AATGCTCTATATGTTTTTCAGAGTTTCTTACCACATTATTTTCTGTCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTCTATATGTTTTTCAGAGTTTCTTACCACATTATTTTCTGTCCTT  200

seq1  TAAAATAACTTAACAATTCTTGCAGAGCTCATTTGCTGATAAGAAAGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAACTTAACAATTCTTGCAGAGCTCATTTGCTGATAAGAAAGGTC  250

seq1  CCTTTGGTTTGAGAAAGTTCTTTTTCTCCTTCACTTTTACAGGATAATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGTTTGAGAAAGTTCTTTTTCTCCTTCACTTTTACAGGATAATTA  300

seq1  TCCAGGATGCAAAGTTAGAAGTGTATTTTTTTTTCTCTTAGGAAAGTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGATGCAAAGTTAGAAGTGTATTTTTTTTTCTCTTAGGAAAGTTTG  350

seq1  CTTTTTTTCTGAAGTCATTAATTATGTCATAACACATTCTTTGTAACCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTCTGAAGTCATTAATTATGTCATAACACATTCTTTGTAACCGT  400

seq1  ATAGTCTTTGAGATGTTTCGGAACTATGTCTTACCACTTTTGTTGTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTTTGAGATGTTTCGGAACTATGTCTTACCACTTTTGTTGTTTAT  450

seq1  ATCATGTTATTTTTCTTTATGTATCTCTTCTTCTAAGAGCTGTAGTTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTTATTTTTCTTTATGTATCTCTTCTTCTAAGAGCTGTAGTTTGA  500

seq1  GACTTCCGTGCCTGACTGCTGGGTCTTCATTATTGGTGTGATTTAGGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCCGTGCCTGACTGCTGGGTCTTCATTATTGGTGTGATTTAGGGAG  550

seq1  CACTGGCCTTTGAGGAGCTGTAGTTTTTTTCTGAAAACAATGTAGTTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCCTTTGAGGAGCTGTAGTTTTTTTCTGAAAACAATGTAGTTGAG  600

seq1  ACACAGCATTTATTTCTTCCCAGAATTC  628
      ||||||||||||||||||||||||||||
seq2  ACACAGCATTTATTTCTTCCCAGAATTC  628


seq1: chr19_48750446_48751578
seq2: B6Ng01-172P03.g_62_1195

seq1  GAATTCTATTAGTGGTTAAGTGGAGAAGAGGATAAAGGCTTAAAACACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTAGTGGTTAAGTGGAGAAGAGGATAAAGGCTTAAAACACTG  50

seq1  AGATTTATTTTGAATAACTAAGTGGAATAAATGAGCAAAGGACTTGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTATTTTGAATAACTAAGTGGAATAAATGAGCAAAGGACTTGAAAA  100

seq1  AGGTAATTGTACGTCTTAAGGGTTCACATATCCCTTTCCCTTCTGTAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAATTGTACGTCTTAAGGGTTCACATATCCCTTTCCCTTCTGTAGGG  150

seq1  AGTAAGAAACTATGCTGAGCCATGTGATAGTCAGCTGATAGGTTTCTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGAAACTATGCTGAGCCATGTGATAGTCAGCTGATAGGTTTCTACC  200

seq1  ATTGTGGCCATTTGTCTTTATCTATAATATTCAAATTGTATTGGACCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGGCCATTTGTCTTTATCTATAATATTCAAATTGTATTGGACCCAG  250

seq1  CTCAGTCTCCTAACTGGAAAAGCTTCAAAATGTCATTTTCTATAAGAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCTCCTAACTGGAAAAGCTTCAAAATGTCATTTTCTATAAGAGCA  300

seq1  ATAGTCCTTGTATAAATCAAACTTATTCCCATTGTGGTCCTTCTTATGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCCTTGTATAAATCAAACTTATTCCCATTGTGGTCCTTCTTATGCA  350

seq1  GAGATTCTGATAGCAACACCTTTCAGTCATGGGCAACAATGGAGCATTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCTGATAGCAACACCTTTCAGTCATGGGCAACAATGGAGCATTGC  400

seq1  TTTTTCAGGGCCTGAGAAGTGGAAAGGGACTCCACAAAGAAAGGTCTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAGGGCCTGAGAAGTGGAAAGGGACTCCACAAAGAAAGGTCTTCA  450

seq1  TTGTTGGTGCACATCCTGTCTGCAAAATTAAAAGTAGAGTGATATGGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGGTGCACATCCTGTCTGCAAAATTAAAAGTAGAGTGATATGGGAT  500

seq1  CTATCCCTCTCCACAGAGAAGTTGGGGAGTCTCACTCAATGATTGTTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCCTCTCCACAGAGAAGTTGGGGAGTCTCACTCAATGATTGTTGTA  550

seq1  AGCTTTGAAAACTATAAATATCAAGTTTCAATCTGAGGGTTACCATTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGAAAACTATAAATATCAAGTTTCAATCTGAGGGTTACCATTTAC  600

seq1  TTACTTGTATTTTGGAGTATTTGATATAACTTCATTACATGTCATTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGTATTTTGGAGTATTTGATATAACTTCATTACATGTCATTTTTA  650

seq1  TTCCCAAAACATAAAATAGAAGGCTAGTATGTACAGATGAGCAGTACTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAAACATAAAATAGAAGGCTAGTATGTACAGATGAGCAGTACTTG  700

seq1  ACACCAATGTCCAGACATGTTATCCACTTAATATCTAACAATAGTTGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAATGTCCAGACATGTTATCCACTTAATATCTAACAATAGTTGTAT  750

seq1  AATTAAAAATAATAACATTAACAAATATTATTATGGATAGTAAATAATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAAATAATAACATTAACAAATATTATTATGGATAGTAAATAATAT  800

seq1  CACGAAAGTTAAGCACTCAAAAATATTTGTTTCTGTTCTCATATTCCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAAAGTTAAGCACTCAAAAATATTTGTTTCTGTTCTCATATTCCCTG  850

seq1  TGTCTGCTTATAAATTCAGAAGTTCAACAGCTGGATTCCCAGTGAGGGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCTTATAAATTCAGAAGTTCAACAGCTGGATTCCCAGTGAGGGTC  900

seq1  -AGGAAGTAACTCACT-GGCTTTGATTTCAGTTTT-GGTATGCAC-ATTT  946
       ||||||||||||||| |||||||||||||||||| ||||||||| ||||
seq2  AAGGAAGTAACTCACTGGGCTTTGATTTCAGTTTTGGGTATGCACAATTT  950

seq1  CCCTCTGCACACTA-GGAAAGTCTATCCTTCAGAAACACAATGAATG-AA  994
      |||||||||||||| |||||||||||||||||||||||||||||||| ||
seq2  CCCTCTGCACACTAGGGAAAGTCTATCCTTCAGAAACACAATGAATGAAA  1000

seq1  AATAAATAATAAAAGATATG-TCAGGTTTAGCTTGGCCACAGCAAGAATG  1043
      |||||||||||||||||||| ||| |||||||||||||||||| ||||||
seq2  AATAAATAATAAAAGATATGTTCAAGTTTAGCTTGGCCACAGCCAGAATG  1050

seq1  GGAATAGTCAAAAGGGACAGATA-TATTTAATGACCGATACATTTATCCA  1092
      | |||||||||| || || |||| |||| ||||| |||||||||||||||
seq2  GTAATAGTCAAATGGAAC-GATATTATTCAATGA-CGATACATTTATCCA  1098

seq1  AAGGAGTCA-TTTACACTGGCCAGGAGCCCAATTAAACCTGT  1133
      |  | |||| |||||||| | |||||  |||||| |||||||
seq2  A--GGGTCATTTTACACT-GTCAGGA--CCAATT-AACCTGT  1134


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