BAC Information

Click to search

BAC

Clone NameB6Ng01-173A12
Chromosome19 (Build37)
Map Location 23,011,902 - 23,119,498
singlet/doubletdoublet
Overlap geneTrpm3
Upstream geneEG433229, EG433230
Downstream geneKlf9, Smc5, Mamdc2, 1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1, Apba1, Gm967
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173A12.bB6Ng01-173A12.g
ACCGA001489GA001490
length677891
definitionB6Ng01-173A12.b B6Ng01-173A12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,011,902 - 23,012,575)(23,118,611 - 23,119,498)
sequence
gaattcaggatttcacctcattctgtggctaccaaactccacagatgttc
aggtcatatatttgaaacagggtgtgtgtgtgtgtgtgtgtgtagccttg
gctgtcctggaattagctttttagaccagagcagcctcagacacacagag
atctgcctgactttgctgggattaaaggtgtgtgtgtgaccactgtccaa
cccagtcccttatataaaatgctgcagtgtcacacatatcttatgaacat
tctcctgtatattttaagtcatctcaaaactgcgaatacccaatactgtg
taagtgctaagaaagtggttattctgtctggtttagggaaacacatgttt
ggtgcaatgtttgggggggggctgttttccagtatttttcttccatggct
agttaacacagagcctcagaaaccatgagccaactatatctcaaggtctt
attgcaccatattaatttagccatcttgtaattaaaaactgggtgttccc
aataaaaataagtgtgtaggttcctaaatactatgcctcatccattcttc
taatggaaattgcaagtgtggaattatgacctgtggctctttcttttcga
aatcatttctctgtatagctacaagggtttttgagattattggggataac
attgggactagagagttcttctagaac
gaattcttaggtcctccccctcatcattgcacaagacatcttataatggc
ctctcagatgtgggggacagactcccgagaacaaaacaacaaagcaaatc
aaaaggttgcaatagtgatttcttcagatttatgaagccatagtatcttg
gcatccggaagtaaattgagacaaacaagggaaccacggcgacgtcggtg
cggcacgagtacccaccaaagtgggtacatctgtgtcccatcagctcatc
ccccgagtgaagcaaaattggaatgggcaccgcccactctgttctggttt
ccctgggctttcctgcttcgtgtttggagtgtttggagttaatctaaatg
ttagactaggagaaggatgttggtgtcgttagttctgtcctcaatgtgca
agcgagaaactgagttggaaggctgagctcagattctagtgacagagcgc
aagtcaccataaacacaccataaggacactctcacccatatttaaaccct
acttttttttttccccctctgcagaatcccagtttgaactcttgactctt
tcaatagtgactgagatgactaagatgaggtttcctgggctagacccagt
ggcgagtatatgatatatacctaggcttagtcaggtagaagtgggggact
gcagcccatgtttggagaaagattattttctgttttttttccactacctc
caaaccctttcaccatgaagggttggcggtactgtctggtattagcccac
actctactcctctgaagtgagggggtgcttatcattgtacccacaattct
ctctcagtgcgcattaagcaaggctgttgttccatgggacatccgggcac
acatctgtgcacaagggaactaacctgacttctccaggttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_23011902_23012575
seq2: B6Ng01-173A12.b_43_719

seq1  GAATTCAGGATTTCACCTCATTCTGTGGCTACCAAACTCCACAGATGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGATTTCACCTCATTCTGTGGCTACCAAACTCCACAGATGTTC  50

seq1  AGGTCATATATTTGAAACAGGGTGTGTGTGTGTGTGTGTGTGTAGCCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCATATATTTGAAACAGGGTGTGTGTGTGTGTGTGTGTGTAGCCTTG  100

seq1  GCTGTCCTGGAATTAGCTTTTTAGACCAGAGCAGCCTCAGACACACAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCTGGAATTAGCTTTTTAGACCAGAGCAGCCTCAGACACACAGAG  150

seq1  ATCTGCCTGACTTTGCTGGGATTAAAGGTGTGTGTGTGACCACTGTCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCCTGACTTTGCTGGGATTAAAGGTGTGTGTGTGACCACTGTCCAA  200

seq1  CCCAGTCCCTTATATAAAATGCTGCAGTGTCACACATATCTTATGAACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTCCCTTATATAAAATGCTGCAGTGTCACACATATCTTATGAACAT  250

seq1  TCTCCTGTATATTTTAAGTCATCTCAAAACTGCGAATACCCAATACTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGTATATTTTAAGTCATCTCAAAACTGCGAATACCCAATACTGTG  300

seq1  TAAGTGCTAAGAAAGTGGTTATTCTGTCTGGTTTAGGGAAACACATGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGCTAAGAAAGTGGTTATTCTGTCTGGTTTAGGGAAACACATGTTT  350

seq1  GGTGCAATGTTTGGGGGGGGGCTGTTTTCCAGTATTTTTCTTCCATGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAATGTTTGGGGGGGGGCTGTTTTCCAGTATTTTTCTTCCATGGCT  400

seq1  AGTTAACACAGAGCCTCAGAAACCATGAGCCAACTATATCTCAAGGTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAACACAGAGCCTCAGAAACCATGAGCCAACTATATCTCAAGGTCTT  450

seq1  ATTGCACCATATTAATTTAGCCATCTTGTAATTAAAAACTGGGTGTTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCACCATATTAATTTAGCCATCTTGTAATTAAAAACTGGGTGTTCCC  500

seq1  AATAAAAATAAGTGTGTAGGTTCCTAAATACTATGCCTCATCCATTCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAATAAGTGTGTAGGTTCCTAAATACTATGCCTCATCCATTCTTC  550

seq1  TAATGGAAATTGCAAGTGTGGAATTATGACCTGTGGCTCTTTC-TTTCGA  599
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TAATGGAAATTGCAAGTGTGGAATTATGACCTGTGGCTCTTTCTTTTCGA  600

seq1  AATCATTTCTCTGTATAGCTACAAGGG-TTTTGAGATTATT-GGGATAAC  647
      ||||||||||||||||||||||||||| ||||||||||||| ||||||||
seq2  AATCATTTCTCTGTATAGCTACAAGGGTTTTTGAGATTATTGGGGATAAC  650

seq1  AGTGGGACTAGAGAGTTCTTCTAGAAC  674
      | |||||||||||||||||||||||||
seq2  ATTGGGACTAGAGAGTTCTTCTAGAAC  677

seq1: chr19_23118611_23119498
seq2: B6Ng01-173A12.g_70_960 (reverse)

seq1  CAACCTGGAGAAGTCAGGTAAGTT-CCTTGTGCACAGATGTGTGCCCGGA  49
      ||||||||||||||||||| |||| |||||||||||||||||||||||||
seq2  CAACCTGGAGAAGTCAGGTTAGTTCCCTTGTGCACAGATGTGTGCCCGGA  50

seq1  TGTCCCATGGAACAACAGCCTTGCTTAATGCGCACTGAGAGAGAATTGTG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCATGGAACAACAGCCTTGCTTAATGCGCACTGAGAGAGAATTGTG  100

seq1  GGTACAATGATAAGCA-CCCCTCACTTCAGAGGAGTAGAGTGTGGGCTAA  148
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGTACAATGATAAGCACCCCCTCACTTCAGAGGAGTAGAGTGTGGGCTAA  150

seq1  TACCAGACAGTACCGCCAACCCTTCATGGTGAAAGGGTTTGGAGGTAGTG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGACAGTACCGCCAACCCTTCATGGTGAAAGGGTTTGGAGGTAGTG  200

seq1  G-AAAAAAACAGAAAATAATCTTTCTCCAAACATGGGCTGCAGTCCCCCA  247
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAACAGAAAATAATCTTTCTCCAAACATGGGCTGCAGTCCCCCA  250

seq1  CTTCTACCTGACTAAGCCTAGGTATATATCATATACTCGCCACTGGGTCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTACCTGACTAAGCCTAGGTATATATCATATACTCGCCACTGGGTCT  300

seq1  AGCCCAGGAAACCTCATCTTAGTCATCTCAGTCACTATTGAAAGAGTCAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGGAAACCTCATCTTAGTCATCTCAGTCACTATTGAAAGAGTCAA  350

seq1  GAGTTCAAACTGGGATTCTGCAGAGGGGGAAAAAAAAAAGTAGGGTTTAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCAAACTGGGATTCTGCAGAGGGGGAAAAAAAAAAGTAGGGTTTAA  400

seq1  ATATGGGTGAGAGTGTCCTTATGGTGTGTTTATGGTGACTTGCGCTCTGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGGTGAGAGTGTCCTTATGGTGTGTTTATGGTGACTTGCGCTCTGT  450

seq1  CACTAGAATCTGAGCTCAGCCTTCCAACTCAGTTTCTCGCTTGCACATTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGAATCTGAGCTCAGCCTTCCAACTCAGTTTCTCGCTTGCACATTG  500

seq1  AGGACAGAACTAACGACACCAACATCCTTCTCCTAGTCTAACATTTAGAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGAACTAACGACACCAACATCCTTCTCCTAGTCTAACATTTAGAT  550

seq1  TAACTCCAAACACTCCAAACACGAAGCAGGAAAGCCCAGGGAAACCAGAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCCAAACACTCCAAACACGAAGCAGGAAAGCCCAGGGAAACCAGAA  600

seq1  CAGAGTGGGCGGTGCCCATTCCAATTTTGCTTCACTCGGGGGATGAGCTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGGGCGGTGCCCATTCCAATTTTGCTTCACTCGGGGGATGAGCTG  650

seq1  ATGGGACACAGATGTACCCACTTTGGTGGGTACTCGTGCCGCACCGACGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGACACAGATGTACCCACTTTGGTGGGTACTCGTGCCGCACCGACGT  700

seq1  CGCCGTGGTTCCCTTGTTTGTCTCAATTTACTTCCGGATGCCAAGATACT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCGTGGTTCCCTTGTTTGTCTCAATTTACTTCCGGATGCCAAGATACT  750

seq1  ATGGCTTCATAAATCTGAAGAAATCACTATTGCAACCTTTTGATTTGCTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTCATAAATCTGAAGAAATCACTATTGCAACCTTTTGATTTGCTT  800

seq1  TGTTGTTTTGTTCTCGGGAGTCTGTCCCCCACATCTGAGAGGCCATTATA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTTTGTTCTCGGGAGTCTGTCCCCCACATCTGAGAGGCCATTATA  850

seq1  AGATGTCTTGTGCAATGATGAGGGGGAGGACCTAAGAATTC  888
      |||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTCTTGTGCAATGATGAGGGGGAGGACCTAAGAATTC  891