BAC Information

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BAC

Clone NameB6Ng01-174C24
Chromosome19 (Build37)
Map Location 49,781,380 - 49,905,856
singlet/doubletdoublet
Overlap geneLOC629448
Upstream geneSorcs3, LOC100042896
Downstream geneSiah1-ps1, EG433251, Sorcs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174C24.bB6Ng01-174C24.g
ACCGA002338GA002339
length1,092938
definitionB6Ng01-174C24.b B6Ng01-174C24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,781,380 - 49,782,466)(49,904,929 - 49,905,856)
sequence
gaattcactctgtagaccaggttggccttgaactcagaaatccccctgcc
tctgccttccaagtgctgggattaaaggcgtgtgccaccacagcctggca
attccattcattcttacctgtgtcttcttcaagacacagtgtgtatgcat
gttgcatatccatgtgtgtggtgttcaagtgtgcatgtgtggagcttagg
cctccatgtcagaggacttttcctataattgtttgtcttttcactgcctc
tcctcattgagtcctgtgtacatatgggcgaggcattgcattaatatatg
tactgaggtcagaagacaaacttcaggagttagttctcttcttttactgt
gtggttcttgggagtccaattcacactatcaggcttattggccagtgccc
taagctaatgtggcatctcacacactgtccaccttagttttggagattga
gattttcactgaacccaaagctcactattttggcaagaaggagcttcagg
catccttctgagtccacttccgctcagctagattttaagtagacttcatc
actgtgtttttaacttgggttctgaggctccagacacgggttgtcataca
tgcacagtaagctctaactctttctgtaagcaatttaccagtcacatcta
gaaatttgaaaattaacatatgggaaatgcaatagacattacacctaaaa
attagcatcttaaagcataatttccaagaaaagactactaatttaagaaa
aacataatatgtacataaatctcaaaacactatttttctacgtattgata
gactacttatagaaaatgtttcagtatttgatggaacactcactgaaatg
ctcttaaaactgtgtattgattttttctaatgcatttgttgcctttaaat
ctatgcactcatgtccttctaggtcttttacagtaaaaattttatcatac
tttgtatgctggttgaccaattcacaggccttttaaaagtcagggtttgt
tgtcagcatcttgaattaaataaagtaactcacagccttgtaaggttcca
ttaaacacatttaaattggagaatacttcaatcattaaaact

gaattcatacccagtggattacaataagcaagaagcctgagcctgtcttc
cacctttgtctagaaataactagtgaattcattgaagcaataaaagaagc
catttgtggagcagacgcagatgtggctacagggtcctcctgaggaatcc
tgaccgaccagtgtctccagcctgtgttcctgtgtgtctgctcccactcc
atgctgctctctcgctgaccctcattagctgtggatgcttggccctggtc
ttatcactctgggactcccagtgcttgtttgctgaagtggctgcctttgc
tttccttctggttgacagtttcactgtcgatgttgccctattgactgcag
caacatcggagaagtctccccaaccacagtgtgtttctgacaactgatat
gacaggtaagcgggggagagagtcacacattaaagggcaatgaaccctgg
agtggacagactagggaactaggaaacagatctggggattcaacattcat
catttgaaagaaacataaatatttccctttgttttcaactagagatttat
gaaaatgttaagagttctataaatactcaaaagagatgtgatgcatacta
agctgggatgagaaaataattcaatcaaatagcttagtgttttagcaata
caatgtgaatgatgtaaacaactaaaatatatacaaaatacaaattattt
tgtttttctatgttctatgatacattgcacacaattaaacactcatatgc
atccagatgcaagaattagtgtttgatgtttctcctttattaaaatattt
taaatcataaattttgttttactttaagactctaagaaagggtcccagag
tttagaaagctgggccactatatttccctatttgcatatatgttgtgtgt
acttgttcagaaaagccattccaagccataacatattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_49781380_49782466
seq2: B6Ng01-174C24.b_30_1121

seq1  GAATTCACTCTGTAGACCAGGTTGGCCTTGAACTCAGAAATCCCCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGTTGGCCTTGAACTCAGAAATCCCCCTGCC  50

seq1  TCTGCCTTCCAAGTGCTGGGATTAAAGGCGTGTGCCACCACAGCCTGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTTCCAAGTGCTGGGATTAAAGGCGTGTGCCACCACAGCCTGGCA  100

seq1  ATTCCATTCATTCTTACCTGTGTCTTCTTCAAGACACAGTGTGTATGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATTCATTCTTACCTGTGTCTTCTTCAAGACACAGTGTGTATGCAT  150

seq1  GTTGCATATCCATGTGTGTGGTGTTCAAGTGTGCATGTGTGGAGCTTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCATATCCATGTGTGTGGTGTTCAAGTGTGCATGTGTGGAGCTTAGG  200

seq1  CCTCCATGTCAGAGGACTTTTCCTATAATTGTTTGTCTTTTCACTGCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATGTCAGAGGACTTTTCCTATAATTGTTTGTCTTTTCACTGCCTC  250

seq1  TCCTCATTGAGTCCTGTGTACATATGGGCGAGGCATTGCATTAATATATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATTGAGTCCTGTGTACATATGGGCGAGGCATTGCATTAATATATG  300

seq1  TACTGAGGTCAGAAGACAAACTTCAGGAGTTAGTTCTCTTCTTTTACTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGGTCAGAAGACAAACTTCAGGAGTTAGTTCTCTTCTTTTACTGT  350

seq1  GTGGTTCTTGGGAGTCCAATTCACACTATCAGGCTTATTGGCCAGTGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTCTTGGGAGTCCAATTCACACTATCAGGCTTATTGGCCAGTGCCC  400

seq1  TAAGCTAATGTGGCATCTCACACACTGTCCACCTTAGTTTTGGAGATTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTAATGTGGCATCTCACACACTGTCCACCTTAGTTTTGGAGATTGA  450

seq1  GATTTTCACTGAACCCAAAGCTCACTATTTTGGCAAGAAGGAGCTTCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCACTGAACCCAAAGCTCACTATTTTGGCAAGAAGGAGCTTCAGG  500

seq1  CATCCTTCTGAGTCCACTTCCGCTCAGCTAGATTTTAAGTAGACTTCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTCTGAGTCCACTTCCGCTCAGCTAGATTTTAAGTAGACTTCATC  550

seq1  ACTGTGTTTTTAACTTGGGTTCTGAGGCTCCAGACACGGGTTGTCATACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTTTTTAACTTGGGTTCTGAGGCTCCAGACACGGGTTGTCATACA  600

seq1  TGCACAGTAAGCTCTAACTCTTTCTGTAAGCAATTTACCAGTCACATCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGTAAGCTCTAACTCTTTCTGTAAGCAATTTACCAGTCACATCTA  650

seq1  GAAATTTGAAAATTAACATATGGGAAATGCAATAGACATTACACCTAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTGAAAATTAACATATGGGAAATGCAATAGACATTACACCTAAAA  700

seq1  ATTAGCATCTTAAAGCATAATTTCCAAGAAAAGACTACTAATTTAAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCATCTTAAAGCATAATTTCCAAGAAAAGACTACTAATTTAAGAAA  750

seq1  AACATAATATGTACATAAATCTCAAAACACTA-TTTTCTACGTATTGATA  799
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AACATAATATGTACATAAATCTCAAAACACTATTTTTCTACGTATTGATA  800

seq1  GACTACTTATAGAAAATGTTTCAGTATTTGATGGAACACTCACTGAAATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACTTATAGAAAATGTTTCAGTATTTGATGGAACACTCACTGAAATG  850

seq1  CTCTTAAAACTGTGTATTGA-TTTTTCTAATGCATTTGTTGCCTTTAAAT  898
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTCTTAAAACTGTGTATTGATTTTTTCTAATGCATTTGTTGCCTTTAAAT  900

seq1  CTATGCACTCATGTCCTTCTAGGTC-TTTACAGTAAAAATTTTATCATAC  947
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTATGCACTCATGTCCTTCTAGGTCTTTTACAGTAAAAATTTTATCATAC  950

seq1  TTTGTATGCTGGTTGACC-ATTCACA-GCCTTTTAAAAGTCAAGGGTTTG  995
      |||||||||||||||||| ||||||| |||||||||||||| ||||||||
seq2  TTTGTATGCTGGTTGACCAATTCACAGGCCTTTTAAAAGTC-AGGGTTTG  999

seq1  TTGTCAGCATCTGAAATTAAATAAAGTAACTCACAGCCTTGTAA-GTTCC  1044
      ||||||||||||  |||||||||||||||||||||||||||||| |||||
seq2  TTGTCAGCATCTTGAATTAAATAAAGTAACTCACAGCCTTGTAAGGTTCC  1049

seq1  ATAAACAACATTTTAATTGGAGATAACTTCATTCTATAAAACT  1087
      || ||  |||||| |||||||||  |||||| ||  |||||||
seq2  ATTAAACACATTTAAATTGGAGAATACTTCAATCATTAAAACT  1092


seq1: chr19_49904929_49905856
seq2: B6Ng01-174C24.g_67_1004 (reverse)

seq1  AAATATG-TAT-GCTT-GAAT-GCTTTTCTGAACAAGTACACACAACATA  46
      ||||||| ||| |||| |||| ||||||||||||||||||||||||||||
seq2  AAATATGTTATGGCTTGGAATGGCTTTTCTGAACAAGTACACACAACATA  50

seq1  TATGC-AATA-GGAAATATAGTGG-CCAGCTTTCTAAACTCTGGGACCCT  93
      ||||| |||| ||||||||||||| |||||||||||||||||||||||||
seq2  TATGCAAATAGGGAAATATAGTGGCCCAGCTTTCTAAACTCTGGGACCCT  100

seq1  TTCTTAGAGTCTT-AAGTAAAAC-AAATTTATGATTTAAAATATTTTAAT  141
      ||||||||||||| ||||||||| ||||||||||||||||||||||||||
seq2  TTCTTAGAGTCTTAAAGTAAAACAAAATTTATGATTTAAAATATTTTAAT  150

seq1  AAAGGAGAAACATC-AACACTAATTCTTGCATCTGGATGCATATGAGTGT  190
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAAGGAGAAACATCAAACACTAATTCTTGCATCTGGATGCATATGAGTGT  200

seq1  TTAATTGTGTGCAATGTATCATAGAACATAGAAAAACAAAATAATTTGTA  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGTGTGCAATGTATCATAGAACATAGAAAAACAAAATAATTTGTA  250

seq1  TTTTGTATATATTTTAGTTGTTTACATCATTCACATTGTATTGCTAAAAC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTATATATTTTAGTTGTTTACATCATTCACATTGTATTGCTAAAAC  300

seq1  ACTAAGCTATTTGATTGAATTATTTTCTCATCCCAGCTTAGTATGCATCA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGCTATTTGATTGAATTATTTTCTCATCCCAGCTTAGTATGCATCA  350

seq1  CATCTCTTTTGAGTATTTATAGAACTCTTAACATTTTCATAAATCTCTAG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTTTTGAGTATTTATAGAACTCTTAACATTTTCATAAATCTCTAG  400

seq1  TTGAAAACAAAGGGAAATATTTATGTTTCTTTCAAATGATGAATGTTGAA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAACAAAGGGAAATATTTATGTTTCTTTCAAATGATGAATGTTGAA  450

seq1  TCCCCAGATCTGTTTCCTAGTTCCCTAGTCTGTCCACTCCAGGGTTCATT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGATCTGTTTCCTAGTTCCCTAGTCTGTCCACTCCAGGGTTCATT  500

seq1  GCCCTTTAATGTGTGACTCTCTCCCCCGCTTACCTGTCATATCAGTTGTC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTTAATGTGTGACTCTCTCCCCCGCTTACCTGTCATATCAGTTGTC  550

seq1  AGAAACACACTGTGGTTGGGGAGACTTCTCCGATGTTGCTGCAGTCAATA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACACACTGTGGTTGGGGAGACTTCTCCGATGTTGCTGCAGTCAATA  600

seq1  GGGCAACATCGACAGTGAAACTGTCAACCAGAAGGAAAGCAAAGGCAGCC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAACATCGACAGTGAAACTGTCAACCAGAAGGAAAGCAAAGGCAGCC  650

seq1  ACTTCAGCAAACAAGCACTGGGAGTCCCAGAGTGATAAGACCAGGGCCAA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGCAAACAAGCACTGGGAGTCCCAGAGTGATAAGACCAGGGCCAA  700

seq1  GCATCCACAGCTAATGAGGGTCAGCGAGAGAGCAGCATGGAGTGGGAGCA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCACAGCTAATGAGGGTCAGCGAGAGAGCAGCATGGAGTGGGAGCA  750

seq1  GACACACAGGAACACAGGCTGGAGACACTGGTCGGTCAGGATTCCTCAGG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACAGGAACACAGGCTGGAGACACTGGTCGGTCAGGATTCCTCAGG  800

seq1  AGGACCCTGTAGCCACATCTGCGTCTGCTCCACAAATGGCTTCTTTTATT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCCTGTAGCCACATCTGCGTCTGCTCCACAAATGGCTTCTTTTATT  850

seq1  GCTTCAATGAATTCACTAGTTATTTCTAGACAAAGGTGGAAGACAGGCTC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAATGAATTCACTAGTTATTTCTAGACAAAGGTGGAAGACAGGCTC  900

seq1  AGGCTTCTTGCTTATTGTAATCCACTGGGTATGAATTC  928
      ||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCTTGCTTATTGTAATCCACTGGGTATGAATTC  938


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