BAC Information

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BAC

Clone NameB6Ng01-177P14
Chromosome19 (Build37)
Map Location 38,569,481 - 38,763,072
singlet/doubletdoublet
Overlap geneLOC100042483, Plce1
Upstream geneExoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281, Fer1l3, Cep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik, Lgi1, Tmem20
Downstream geneEG667587, Noc3l, Tbc1d12, Hells, LOC209753, Cyp2c55, LOC100042507, Cyp2c65, LOC668278, Cyp2c66, Cyp2c29, Cyp2c38, Cyp2c39, C730004C24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177P14.bB6Ng01-177P14.g
ACCGA005094GA005095
length4701,069
definitionB6Ng01-177P14.b B6Ng01-177P14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,762,597 - 38,763,072)(38,569,481 - 38,570,531)
sequence
ccagcagctctgaggcagcattactcttgcccagctcactcttctatatt
cagaactagaaatggatgtttgagtctggctgcagagatggtaggcagga
gcaaagctgagtgaagaacggtatctgtggaaaggatgaagcagagagat
tcaaaatcagcacccatgaaacactggagttcaaaaactaactcagacaa
gcaaagtctggcatggggagtccttggagcaggcctgcctgggctgaccc
cacctctgacacttactgtggctctctggctaaacctctcttgctttcct
ttttttttaataaaccaagagagacaatgacagagccagcatgagctctt
tgactcatgactctaggagtaagttgcaggctgcactctctcacatgtct
tccctcttaccacagccagtcaaattgaatggccattcagtcaaaagcta
atcattgaaatggacttcaa
gaattctccttcgcctaggacgtgtcactccctgattggctgcagcccat
cggccgagttgacgtcacggggaaggcagagcacatggagtgaagaacca
ccctcggcacatgcgcagattatttgtttaccacttagaacacagctgtc
agcgccatcttgtaacggcgaatgtgggcgcggctcccaacaatggggga
cttttggtatagcattggaaatgtaaatgagctaaatacctaataaaaat
ggaaaaaaaaagtgactctccatgggtgttgtaaaaaatgcttcccccca
ctcctccacccctgaaccgtcaaaaccaagcctatgattcagctctgttg
ctgggggtgcttcagagctcatggcaggaaggttgtttaaaccaggagtt
tgcagccaatctggacaacatgctgagacccccatgtcaaaaggaaaaaa
aaaacggtattgatttatcgatttgcatctctattcctaatgtataactg
tggctttcccaagggatgcttcagcaaaggattccagtgttgtgggatct
ctcttattttcaacctttgtcaaaacttggtattttataattttgaaagt
gcatttctgtagtagcaatgaaagacgttttatctatcctaccatcagtt
tgtttttcttaattacttaattaattcacttcattactaattgatgcttt
ctgctctgtgtctttggtcttctttttctttccctcccacagtatctccc
catgtttttagtggatatttgcctgtgtttctcatttccaacaaacattt
tccttgagcttagaagctggccagcttggggaaatagaagtacaataagg
aaagggagtgaaaaagaacacctataattctacactaaccttattggaca
ttcgcggcatgcctttctttagtggttttttctagtgggggtgatgcctg
cctcatggcccttggtgtccatctttactggaacatcacccaatcagtaa
tgggccttatggttaaaacatttaatgtaaggatccatatttcggggctt
ggaagagatggactcaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_38762597_38763072
seq2: B6Ng01-177P14.b_43_518 (reverse)

seq1  TTGAAGTCCATTTCAATGATTAGCTTTTGACTGAATGGCCATTCAATTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTCCATTTCAATGATTAGCTTTTGACTGAATGGCCATTCAATTTG  50

seq1  ACTGGCTGTGGTAAGAGGGAAGACATGTGAGAGAGTGCAGCCTGCAACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTGTGGTAAGAGGGAAGACATGTGAGAGAGTGCAGCCTGCAACTT  100

seq1  ACTCCTAGAGTCATGAGTCAAAGAGCTCATGCTGGCTCTGTCATTGTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTAGAGTCATGAGTCAAAGAGCTCATGCTGGCTCTGTCATTGTCTC  150

seq1  TCTTGGTTTATTAAAAAAAAAGGAAAGCAAGAGAGGTTTAGCCAGAGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTTTATTAAAAAAAAAGGAAAGCAAGAGAGGTTTAGCCAGAGAGC  200

seq1  CACAGTAAGTGTCAGAGGTGGGGTCAGCCCAGGCAGGCCTGCTCCAAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTAAGTGTCAGAGGTGGGGTCAGCCCAGGCAGGCCTGCTCCAAGGA  250

seq1  CTCCCCATGCCAGACTTTGCTTGTCTGAGTTAGTTTTTGAACTCCAGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCATGCCAGACTTTGCTTGTCTGAGTTAGTTTTTGAACTCCAGTGT  300

seq1  TTCATGGGTGCTGATTTTGAATCTCTCTGCTTCATCCTTTCCACAGATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGGTGCTGATTTTGAATCTCTCTGCTTCATCCTTTCCACAGATAC  350

seq1  CGTTCTTCACTCAGCTTTGCTCCTGCCTACCATCTCTGCAGCCAGACTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCTTCACTCAGCTTTGCTCCTGCCTACCATCTCTGCAGCCAGACTCA  400

seq1  AACATCCATTTCTAGTTCTGAATATAGAAGAGTGAGCTGGGCAAGAGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCCATTTCTAGTTCTGAATATAGAAGAGTGAGCTGGGCAAGAGTAA  450

seq1  TGCTGCCTCAGAGCTGCTGGGAATTC  476
      ||||||||||||||||||||||||||
seq2  TGCTGCCTCAGAGCTGCTGGGAATTC  476

seq1: chr19_38569481_38570531
seq2: B6Ng01-177P14.g_71_1139

seq1  GAATTCTCCTTCGCCTAGGACGTGTCACTCCCTGATTGGCTGCAGCCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTCGCCTAGGACGTGTCACTCCCTGATTGGCTGCAGCCCAT  50

seq1  CGGCCGAGTTGACGTCACGGGGAAGGCAGAGCACATGGAGTGAAGAACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCGAGTTGACGTCACGGGGAAGGCAGAGCACATGGAGTGAAGAACCA  100

seq1  CCCTCGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGCTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGCTGTC  150

seq1  AGCGCCATCTTGTAACGGCGAATGTGGGCGCGGCTCCCAACAATGGGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCCATCTTGTAACGGCGAATGTGGGCGCGGCTCCCAACAATGGGGGA  200

seq1  CTTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCTAATAAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCTAATAAAAAT  250

seq1  GGAAAAAAAAAGTGACTCTCCATGGGTGTTGTAAAAAATGCTTCCCCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAAAAAGTGACTCTCCATGGGTGTTGTAAAAAATGCTTCCCCCCA  300

seq1  CTCCTCCACCCCTGAACCGTCAAAACCAAGCCTATGATTCAGCTCTGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCACCCCTGAACCGTCAAAACCAAGCCTATGATTCAGCTCTGTTG  350

seq1  CTGGGGGTGCTTCAGAGCTCATGGCAGGAAGGTTGTTTAAACCAGGAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGTGCTTCAGAGCTCATGGCAGGAAGGTTGTTTAAACCAGGAGTT  400

seq1  TGCAGCCAATCTGGACAACATGCTGAGACCCCCATGTCAAAAGGAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCAATCTGGACAACATGCTGAGACCCCCATGTCAAAAGGAAAAAA  450

seq1  AAAACGGTATTGATTTATCGATTTGCATCTCTATTCCTAATGTATAACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGGTATTGATTTATCGATTTGCATCTCTATTCCTAATGTATAACTG  500

seq1  TGGCTTTCCCAAGGGATGCTTCAGCAAAGGATTCCAGTGTTGTGGGATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTCCCAAGGGATGCTTCAGCAAAGGATTCCAGTGTTGTGGGATCT  550

seq1  CTCTTATTTTCAACCTTTGTCAAAACTTGGTATTTTATAATTTTGAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTATTTTCAACCTTTGTCAAAACTTGGTATTTTATAATTTTGAAAGT  600

seq1  GCATTTCTGTAGTAGCAATGAAAGACGTTTTATCTATCCTACCATCAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCTGTAGTAGCAATGAAAGACGTTTTATCTATCCTACCATCAGTT  650

seq1  TGTTTTTCTTAATTACTTAATTAATTCACTTCATTACTAATTGATGCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCTTAATTACTTAATTAATTCACTTCATTACTAATTGATGCTTT  700

seq1  CTGCTCTGTGTCTTTGGTCTTCTTTTTCTTTCCCTCCCACAGTATCTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTGTGTCTTTGGTCTTCTTTTTCTTTCCCTCCCACAGTATCTCCC  750

seq1  CATGTTTTTAGTGGATATTTGCCTGTGTTTCTCATTTCCAACAAACATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTTTAGTGGATATTTGCCTGTGTTTCTCATTTCCAACAAACATTT  800

seq1  TCCTTGAGCTTAGAAGCTGGCCAGCTT-GGGAAATAGAAGTACAATAAGG  849
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCCTTGAGCTTAGAAGCTGGCCAGCTTGGGGAAATAGAAGTACAATAAGG  850

seq1  AAA-GGAGTGAAAA--GACACCTATAATTCTACACTAACCTTA-TGGACA  895
      ||| ||||||||||   |||||||||||||||||||||||||| ||||||
seq2  AAAGGGAGTGAAAAAGAACACCTATAATTCTACACTAACCTTATTGGACA  900

seq1  TTCGGCGCATG-CTTTCTTTAGTGTTTTTTTCTAGTTGGGGTGATG-CTG  943
      ||||  ||||| |||||||||||| ||||||||||| ||||||||| |||
seq2  TTCGCGGCATGCCTTTCTTTAGTGGTTTTTTCTAGTGGGGGTGATGCCTG  950

seq1  CCTCAT-GCCCTT-GTGTCCATCTTTACT-GAACATCACCC-ATCAGTA-  988
      |||||| |||||| ||||||||||||||| ||||||||||| ||||||| 
seq2  CCTCATGGCCCTTGGTGTCCATCTTTACTGGAACATCACCCAATCAGTAA  1000

seq1  -TGGCCCTATGGGT-AAACA-TTAATGTAAGGATACATATTTCGGGGCT-  1034
        |||| ||||| | ||||| ||||||||||||| |||||||||||||| 
seq2  TGGGCCTTATGGTTAAAACATTTAATGTAAGGATCCATATTTCGGGGCTT  1050

seq1  -GGAGAGAT-GACTCAGGG  1051
       | |||||| |||||||||
seq2  GGAAGAGATGGACTCAGGG  1069