BAC Information

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BAC

Clone NameB6Ng01-179D03
Chromosome19 (Build37)
Map Location 58,361,315 - 58,474,614
singlet/doubletdoublet
Overlap geneGfra1
Upstream geneAI450540, Trub1, LOC100043038, Atrnl1
Downstream geneLOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179D03.bB6Ng01-179D03.g
ACCGA005984GA005985
length1,055531
definitionB6Ng01-179D03.b B6Ng01-179D03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,473,558 - 58,474,614)(58,361,315 - 58,361,850)
sequence
gaattcattaagcccagattagccttactataattactcagaagtaattc
aattgaaaatatttttaaatggtataaaatacattggttaggctagaaag
ccaccccattctactttatcagctccataaagcaccagccgacttggaca
taactttcatagtatacagaatgcaatcataaaaagtattattcctaaat
ctatttttttatgttctttcagtagttaagagctttatacctcggtggta
ggagtgagatatactagggatggaatgccataaaatgctggggactttta
ctagctgtcctttacactgcctgccccagtcagtgtaggctgatgggctg
cagtggtacggctgaggattgatactggcaagcaccttctctaggaaaca
aaactggaagatacttttttattttgtgttttttcttatctacaaataaa
agacatttaccaagtgcagagtgctttcagacagagcccagtgacaggca
aagtattggtcttcatttctttcatgatgaaaggtgaggtaagtgcagga
cggaggaatgtgacagaactctcttgggcctctatctggaacaggacaag
aacaaaaggcgagggaggtactctaatgccaaaggactcaggtaggaggc
gagtttgggggcatccaggccgttcgagatagtcactaaagctttgccaa
ggctcttgggggctctgtttcagttttgaactatttgtgtgtgtgccaga
aggaagtgggaggcttgtgggtactggctgtgtagcgtggagctgcgttg
agctgtctggcttttggagacacttccaactaaatcatagcctgtgtggt
gccactgaagggcaggatgggcctctgaagagagcatgactttggcactg
ccttcagtggtgacagaaccttgcacccaggcaggaaggggctctgtatg
ctccaacctttggtatattaattaagtactgaaccgtttcctcaggcaat
cttgagcttgccccagcgtcttacctgtttgatttagtgaatgaaagtgg
gtctc
cagaaccatctctcaggccttctgctgtggcatagacacctgcccttgtc
tttctcctcagtgctgaggacaccccactcatctcttacctctgagcccc
acaaagcatctgatgacccaccaatgaactaatcaccagccacagctcac
aaaacagccagtctaacgaacaagagggaaatgtcacagccacaggcctt
atttgtagctaagtgtggttcagtttgaagttttaattcgggggtggggg
gtgatctctgggcctttgtcctgtttctgtagacaggttttccagcaagg
tgtctgactcctttgctgcagtcttctggaagggaaggcttttcctctac
ccagacccatgttccaagaagcttcaagctgttatatggatccaggtaag
caactgctgggtgattgcaagaatctggtattcttagtccttagtccact
caaaagggcttctagtgcctgttcccagacagcccctaggcacaccgtgc
caacatgcggagctggtcaggcacagggcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_58473558_58474614
seq2: B6Ng01-179D03.b_44_1098 (reverse)

seq1  GAGACCCACTTTCTATCAACTAAATCAAAACAGGTAGAAACCGCTTGGGG  50
      ||||||||||||| ||  |||||||| ||||||||  ||  |||| ||| 
seq2  GAGACCCACTTTC-ATTCACTAAATC-AAACAGGT--AAGACGCTGGGGC  46

seq1  CAGCTCAAAGAATTTGCCTGAGGAAACGGTTTCAGTACTTAATTAAATAT  100
       ||||| ||||  |||||||||||||||| |||||||||||||| |||||
seq2  AAGCTC-AAGA--TTGCCTGAGGAAACGG-TTCAGTACTTAATT-AATAT  91

seq1  ACCAAA-GTTTGAGCATAACAGAGCCCCTTCCTGCCTGGGTGCA--GGTC  147
      |||||| ||| |||||| ||||||||||||||||||||||||||  | ||
seq2  ACCAAAGGTTGGAGCAT-ACAGAGCCCCTTCCTGCCTGGGTGCAAGGTTC  140

seq1  TGTCACCACTGGA-GCAGTGCCAAAGTCATGCTCTCCTCCAGAGGCCATT  196
      ||||||||||| | ||||||||||||||||||||| || ||||||||  |
seq2  TGTCACCACTGAAGGCAGTGCCAAAGTCATGCTCT-CTTCAGAGGCCCAT  189

seq1  CCTGCCC-TCAGTGGCACCACACAGGCTATGATTTAGTTGGAAGTGTCTC  245
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCTTCAGTGGCACCACACAGGCTATGATTTAGTTGGAAGTGTCTC  239

seq1  C-AAAGCCAGACAGCTC-ACGCAGCTCCACGCTACACAGCCAGTACCCAC  293
      | ||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CAAAAGCCAGACAGCTCAACGCAGCTCCACGCTACACAGCCAGTACCCAC  289

seq1  AAGCCTCCCACTTCCTTCTGGCACACACACAAATAGTTC-AAACTG-AAC  341
      ||||||||||||||||||||||||||||||||||||||| |||||| |||
seq2  AAGCCTCCCACTTCCTTCTGGCACACACACAAATAGTTCAAAACTGAAAC  339

seq1  AGAGCCCCCAAGAGCCTTGGCAAAGCTTTAGTGACTATCTCGAACGGCCT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCCCCAAGAGCCTTGGCAAAGCTTTAGTGACTATCTCGAACGGCCT  389

seq1  GGATGCCCCCAAACTCGCCTCCTACCTGAGTCCTTTGGCATTAGAGTACC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCCCCCAAACTCGCCTCCTACCTGAGTCCTTTGGCATTAGAGTACC  439

seq1  TCCCTCGCCTTTTGTTCTTGTCCTGTTCCAGATAGAGGCCCAAGAGAGTT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCGCCTTTTGTTCTTGTCCTGTTCCAGATAGAGGCCCAAGAGAGTT  489

seq1  CTGTCACATTCCTCCGTCCTGCACTTACCTCACCTTTCATCATGAAAGAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACATTCCTCCGTCCTGCACTTACCTCACCTTTCATCATGAAAGAA  539

seq1  ATGAAGACCAATACTTTGCCTGTCACTGGGCTCTGTCTGAAAGCACTCTG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGACCAATACTTTGCCTGTCACTGGGCTCTGTCTGAAAGCACTCTG  589

seq1  CACTTGGTAAATGTCTTTTATTTGTAGATAAGAAAAAACACAAAATAAAA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGTAAATGTCTTTTATTTGTAGATAAGAAAAAACACAAAATAAAA  639

seq1  AAGTATCTTCCAGTTTTGTTTCCTAGAGAAGGTGCTTGCCAGTATCAATC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATCTTCCAGTTTTGTTTCCTAGAGAAGGTGCTTGCCAGTATCAATC  689

seq1  CTCAGCCGTACCACTGCAGCCCATCAGCCTACACTGACTGGGGCAGGCAG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCGTACCACTGCAGCCCATCAGCCTACACTGACTGGGGCAGGCAG  739

seq1  TGTAAAGGACAGCTAGTAAAAGTCCCCAGCATTTTATGGCATTCCATCCC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAGGACAGCTAGTAAAAGTCCCCAGCATTTTATGGCATTCCATCCC  789

seq1  TAGTATATCTCACTCCTACCACCGAGGTATAAAGCTCTTAACTACTGAAA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATATCTCACTCCTACCACCGAGGTATAAAGCTCTTAACTACTGAAA  839

seq1  GAACATAAAAAAATAGATTTAGGAATAATACTTTTTATGATTGCATTCTG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATAAAAAAATAGATTTAGGAATAATACTTTTTATGATTGCATTCTG  889

seq1  TATACTATGAAAGTTATGTCCAAGTCGGCTGGTGCTTTATGGAGCTGATA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTATGAAAGTTATGTCCAAGTCGGCTGGTGCTTTATGGAGCTGATA  939

seq1  AAGTAGAATGGGGTGGCTTTCTAGCCTAACC-GTGTATTTTATACCATTT  990
      |||||||||||||||||||||||||||||||  |||||||||||||||||
seq2  AAGTAGAATGGGGTGGCTTTCTAGCCTAACCAATGTATTTTATACCATTT  989

seq1  AAAAATATTTTCAATTGAATTACTTTCTGAGTAATTATAGTAAGGCTAAT  1040
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAAAATATTTTCAATTGAATTAC-TTCTGAGTAATTATAGTAAGGCTAAT  1038

seq1  CTGGGCTTAATGAATTC  1057
      |||||||||||||||||
seq2  CTGGGCTTAATGAATTC  1055

seq1: chr19_58361315_58361850
seq2: B6Ng01-179D03.g_66_601

seq1  GAATTCCAGAACCATCTCTCAGGCCTTCTGCTGTGGCATAGACACCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAACCATCTCTCAGGCCTTCTGCTGTGGCATAGACACCTGCC  50

seq1  CTTGTCTTTCTCCTCAGTGCTGAGGACACCCCACTCATCTCTTACCTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTTTCTCCTCAGTGCTGAGGACACCCCACTCATCTCTTACCTCTG  100

seq1  AGCCCCACAAAGCATCTGATGACCCACCAATGAACTAATCACCAGCCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCACAAAGCATCTGATGACCCACCAATGAACTAATCACCAGCCACA  150

seq1  GCTCACAAAACAGCCAGTCTAACGAACAAGAGGGAAATGTCACAGCCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACAAAACAGCCAGTCTAACGAACAAGAGGGAAATGTCACAGCCACA  200

seq1  GGCCTTATTTGTAGCTAAGTGTGGTTCAGTTTGAAGTTTTAATTCGGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTATTTGTAGCTAAGTGTGGTTCAGTTTGAAGTTTTAATTCGGGGG  250

seq1  TGGGGGGTGATCTCTGGGCCTTTGTCCTGTTTCTGTAGACAGGTTTTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGTGATCTCTGGGCCTTTGTCCTGTTTCTGTAGACAGGTTTTCCA  300

seq1  GCAAGGTGTCTGACTCCTTTGCTGCAGTCTTCTGGAAGGGAAGGCTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGTGTCTGACTCCTTTGCTGCAGTCTTCTGGAAGGGAAGGCTTTTC  350

seq1  CTCTACCCAGACCCATGTTCCAAGAAGCTTCAAGCTGTTATATGGAGCCA  400
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTCTACCCAGACCCATGTTCCAAGAAGCTTCAAGCTGTTATATGGATCCA  400

seq1  GGTAAGCAACTGCTGGGTGATTGCAAGAATCTGGTATTCTTAGTCCTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGCAACTGCTGGGTGATTGCAAGAATCTGGTATTCTTAGTCCTTAG  450

seq1  TCCACTCAAAAGGGCTTCAAGTGCCTGTTCCCAGACAGCCCCTAGGCACA  500
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCCACTCAAAAGGGCTTCTAGTGCCTGTTCCCAGACAGCCCCTAGGCACA  500

seq1  CCGTGCCAACATGCGGAGCTGGTCAGGCACAGGGCA  536
      ||||||||||||||||||||||||||||||||||||
seq2  CCGTGCCAACATGCGGAGCTGGTCAGGCACAGGGCA  536