BAC Information

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BAC

Clone NameB6Ng01-179I23
Chromosome19 (Build37)
Map Location 59,072,599 - 59,246,746
singlet/doubletdoublet
Overlap gene4930506M07Rik, LOC668626, Vax1
Upstream geneAtrnl1, Gfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik
Downstream geneLOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2, Rab11fip2, LOC100043087, LOC100043091, LOC100043093
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179I23.bB6Ng01-179I23.g
ACCGA006247GA006248
length1,015616
definitionB6Ng01-179I23.b B6Ng01-179I23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,072,599 - 59,073,599)(59,246,132 - 59,246,746)
sequence
gaattccactttctcccatgtaagaatgaatgtggcttattgaccccagc
ccctgggaacatccttcaaacaaactcctaccaggtttaaaagagagtgt
catttggcaaagaagagtagggatagggccacgggggtccacaattaata
caaagaaatattaatactggaattattactcctattgatacatgaatctc
agaaaaggcagagatctaagaaagaactcaaatagagttttcataaatca
taaatagtttcacaaatctatctacatgaagtaatataaaattgtagtga
atattatactgaaaaacaaatttgtcctgtggatacagactggtggtcaa
gcacaagcttagcatgtgtgcaatgcacacatgcatacatacatgcaagc
acgtgtgcacacacacatgataatgctatattcattaaacttgctaccat
ccagcactatctgccattgatatatttttgcataattacgtattatctga
ttttcttaataaatcaaatttttaacaagtcacactgagtctagttggct
cttagataccagagctgttcttccctctcctaaggcccccagggacttct
tcaaccacaggaattagcattcaaatgaagaagcaacaaaaggggctgtc
aaaggggcagagccctagatgacaaaatcttccatcataggatccgtatg
gttaagagccaagccctttgtcaggtgctgtctaatccttgattctgtag
gtagaccaccactgtttagccagtgatatcaccactctttcagggctaat
ctccactcacttaaaactaaagcaaactaattaaagcccattctgtgaag
tctactgtttaaagtcattctttgatgaaaataatgttggtttaccgtca
attatgtggacgtctacacgtgatgctttaattagcacagtacaactaac
agggcagggattatttccccgcacctccggcctccttgtctgttgactaa
ctgtgcataataact
gaattccggacctgcacccggagcagtactcccgacggatctcagcaagg
gcacccatccgaagcctcaggaatcctccttcacaggtgtagtcgttggg
gccaaggcagtgggcgtaccgcacttctccagtcggccggctagctcgcc
aaggagagacccttttcttctttccgcttccttgcgttcctgtggggtag
aagttctaggcacttgcgggccgggtctcacagaggcgtcccgcctgagg
acagctcccgcagagatctatatctttgggctctcaatctgtccccggga
tactccccgctcagtgaacatcactcaacataatcaccccaagtatcccc
aatcatataaagtcaactccccaaggtctgcctgagtgccacagaaacct
tgggaacagaccaaacgcgattgctcctaagagaccggccggaggtggct
tggagaggagcgttgttacccggctcggcccaccccctccacgttcagca
gtctcgagggaccgcggtggtggccgggaggtgacagccggactgtgggg
cgggcgcagagcccctcggaggccgccacacacactcgctgtcctcccca
ctcacttttgtgcctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_59072599_59073599
seq2: B6Ng01-179I23.b_43_1057

seq1  GAATTCCACTTTCTCCCATGTAAGAATGAATGTGGCTTATTGACCCCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTTCTCCCATGTAAGAATGAATGTGGCTTATTGACCCCAGC  50

seq1  CCCTGGGAACATCCTTCAAACAAACTCCTACCAGG-GTAGAAGAGAGTGT  99
      |||||||||||||||||||||||||||||||||||  || ||||||||||
seq2  CCCTGGGAACATCCTTCAAACAAACTCCTACCAGGTTTAAAAGAGAGTGT  100

seq1  CATTTGGCAAAGAAGAGTAGGGATAGGGCCACGGGGGTCCACAATTAATA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGGCAAAGAAGAGTAGGGATAGGGCCACGGGGGTCCACAATTAATA  150

seq1  CAAAGAAATATTAATACTGGAATTATTACTCCTATTGATACATGAATCTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAATATTAATACTGGAATTATTACTCCTATTGATACATGAATCTC  200

seq1  AGAAAAGGCAGAGATCTAAGAAAGAACTCAAATAGAGTTTTCATAAATCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGGCAGAGATCTAAGAAAGAACTCAAATAGAGTTTTCATAAATCA  250

seq1  TAAATAGTTTCACAAATCTATCTACATGAAGTAATATAAAATTGTAGTGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGTTTCACAAATCTATCTACATGAAGTAATATAAAATTGTAGTGA  300

seq1  ATATTATACTGAAAAACAAATTTGTCCTGTGGATACAGACTGGTGGTCAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATACTGAAAAACAAATTTGTCCTGTGGATACAGACTGGTGGTCAA  350

seq1  GCACAAGCTTAGCATGTGTGCAATGCACACATGCATACATACATGCAAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAGCTTAGCATGTGTGCAATGCACACATGCATACATACATGCAAGC  400

seq1  ACGTGTGCACACACACATGATAATGCTATATTCATTAAACTTGCTACCAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTGCACACACACATGATAATGCTATATTCATTAAACTTGCTACCAT  450

seq1  CCAGCACTATCTGCCATTGATATATTTTTGCATAATTACGTATTATCTGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTATCTGCCATTGATATATTTTTGCATAATTACGTATTATCTGA  500

seq1  TTTTCTTAATAAATCAAATTTTTAACAAGTCACACTGAGTCTAGTTGGCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTAATAAATCAAATTTTTAACAAGTCACACTGAGTCTAGTTGGCT  550

seq1  CTTAGATACCAGAGCTGTTCTTCCCTCTCCTAAGGCCCCCAGGGACTTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGATACCAGAGCTGTTCTTCCCTCTCCTAAGGCCCCCAGGGACTTCT  600

seq1  TCAACCACAGGAATTAGCATTCAAATGAAGAAGCAACAAAAGGGGCTGTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCACAGGAATTAGCATTCAAATGAAGAAGCAACAAAAGGGGCTGTC  650

seq1  AAAGGGGCAGAGCCCTAGATGACAAAATCTTCCATCATAGGATCCGTATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGCAGAGCCCTAGATGACAAAATCTTCCATCATAGGATCCGTATG  700

seq1  GTTAAGAGCCAAGCCCTTTGTCAGGGGCTGTCTAATCCTTGATTCTGTAG  749
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTTAAGAGCCAAGCCCTTTGTCAGGTGCTGTCTAATCCTTGATTCTGTAG  750

seq1  GTAGACCACCACTG-TTAGCCAGTGATA-CACCACTC-TTCAGGGCTAAT  796
      |||||||||||||| ||||||||||||| |||||||| ||||||||||||
seq2  GTAGACCACCACTGTTTAGCCAGTGATATCACCACTCTTTCAGGGCTAAT  800

seq1  C-CCACTCACTTAAAACTAAAGCAAACTAATTAA--GCCATTCTGTGAAG  843
      | ||||||||||||||||||||||||||||||||   |||||||||||||
seq2  CTCCACTCACTTAAAACTAAAGCAAACTAATTAAAGCCCATTCTGTGAAG  850

seq1  TCTACTGTTTAAAGTCATTC-TTGATGAAAATAATGTT-GTTTACCGTC-  890
      |||||||||||||||||||| ||||||||||||||||| |||||||||| 
seq2  TCTACTGTTTAAAGTCATTCTTTGATGAAAATAATGTTGGTTTACCGTCA  900

seq1  ATTATGTGGACGTCTACACGTGATGC-TTAATTAGCACAGTAACAACAAA  939
      |||||||||||||||||||||||||| |||||||||||||| ||||| ||
seq2  ATTATGTGGACGTCTACACGTGATGCTTTAATTAGCACAGT-ACAACTAA  949

seq1  CAGGGCAGGGATTATT--CCCGCACCTCCG--CCCCATGTCTGTTGACTA  985
      ||||||||||||||||  ||||||||||||  | || |||||||||||||
seq2  CAGGGCAGGGATTATTTCCCCGCACCTCCGGCCTCCTTGTCTGTTGACTA  999

seq1  ACTGTGCATAATAACT  1001
      ||||||||||||||||
seq2  ACTGTGCATAATAACT  1015

seq1: chr19_59246132_59246746
seq2: B6Ng01-179I23.g_70_685 (reverse)

seq1  GAGGCAC-AAAGTGAGTGGGGAGGACAGCGAGTGTGTGTGGCGGCCTCCG  49
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCACAAAAGTGAGTGGGGAGGACAGCGAGTGTGTGTGGCGGCCTCCG  50

seq1  AGGGGCTCTGCGCCCGCCCCACAGTCCGGCTGTCACCTCCCGGCCACCAC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTCTGCGCCCGCCCCACAGTCCGGCTGTCACCTCCCGGCCACCAC  100

seq1  CGCGGTCCCTCGAGACTGCTGAACGTGGAGGGGGTGGGCCGAGCCGGGTA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGGTCCCTCGAGACTGCTGAACGTGGAGGGGGTGGGCCGAGCCGGGTA  150

seq1  ACAACGCTCCTCTCCAAGCCACCTCCGGCCGGTCTCTTAGGAGCAATCGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACGCTCCTCTCCAAGCCACCTCCGGCCGGTCTCTTAGGAGCAATCGC  200

seq1  GTTTGGTCTGTTCCCAAGGTTTCTGTGGCACTCAGGCAGACCTTGGGGAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGTCTGTTCCCAAGGTTTCTGTGGCACTCAGGCAGACCTTGGGGAG  250

seq1  TTGACTTTATATGATTGGGGATACTTGGGGTGATTATGTTGAGTGATGTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTTATATGATTGGGGATACTTGGGGTGATTATGTTGAGTGATGTT  300

seq1  CACTGAGCGGGGAGTATCCCGGGGACAGATTGAGAGCCCAAAGATATAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGCGGGGAGTATCCCGGGGACAGATTGAGAGCCCAAAGATATAGA  350

seq1  TCTCTGCGGGAGCTGTCCTCAGGCGGGACGCCTCTGTGAGACCCGGCCCG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCGGGAGCTGTCCTCAGGCGGGACGCCTCTGTGAGACCCGGCCCG  400

seq1  CAAGTGCCTAGAACTTCTACCCCACAGGAACGCAAGGAAGCGGAAAGAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGCCTAGAACTTCTACCCCACAGGAACGCAAGGAAGCGGAAAGAAG  450

seq1  AAAAGGGTCTCTCCTTGGCGAGCTAGCCGGCCGACTGGAGAAGTGCGGTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGTCTCTCCTTGGCGAGCTAGCCGGCCGACTGGAGAAGTGCGGTA  500

seq1  CGCCCACTGCCTTGGCCCCAACGACTACACCTGTGAAGGAGGATTCCTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCACTGCCTTGGCCCCAACGACTACACCTGTGAAGGAGGATTCCTGA  550

seq1  GGCTTCGGATGGGTGCCCTTGCTGAGATCCGTCGGGAGTACTGCTCCGGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCGGATGGGTGCCCTTGCTGAGATCCGTCGGGAGTACTGCTCCGGG  600

seq1  TGCAGGTCCGGAATTC  615
      ||||||||||||||||
seq2  TGCAGGTCCGGAATTC  616