BAC Information

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BAC

Clone NameB6Ng01-179J12
Chromosome19 (Build37)
Map Location 52,365,294 - 52,366,357
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042924, LOC100042928, LOC668536, LOC100042936, Ins1
Downstream geneLOC100043450, Xpnpep1, LOC668545, LOC674277, Add3, 1700001K23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179J12.bB6Ng01-179J12.g
ACCGA006273GA006274
length1,0681,163
definitionB6Ng01-179J12.b B6Ng01-179J12.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttctctctctctctctctccctctctctccttgacagccctct
tctgtttttattaaacaggtttttacccagcattctattaaattcttatt
tcactagggatgtgtccacatttcaattattttacagcaatttattcttt
tttgttgatatatcttaaaacaatgttgtatattttctccactcacattt
aggctaatttccattaatctggaaatattataaaggcaagaaaattgctc
cctcactcctccctctaaacaagagtgatcctgccagtaaattttttgtg
tctaacatgtatgttgacttagcttctcacacatatgttgaatatccata
tgactcaggcttattgaagttaaacatataagagacaataattagagtct
aactcgagctatactcagaagctgtcagctattcttggttttataatgat
taggagattcattctgctttgctttaatgacctacctacaaaataatggt
attaataactactgtctcataagaattttcagccacacaaataaaactat
aaattttggattaagaatgtatatagacactgtgaatagtaggttttgag
ctattatcttatgcctttgggctctctagattttatgtcaacttaaagac
acaggctagactcgtttgggaagaaaataccaactgagcaactacctcaa
caagattaggttttggacaagcttgtgggggcatttcttgattaatgatt
aatgttggagggtccagcccatggggagggtccaccctttggtggcagtt
tggtcctggaaaggtaagaaacttaagcaaacattacggacaagccagta
gctacactcctaaatgcctttacaccagctgctattctccagcctcctgc
cggatataagtttcctgttttggcttccctcagtgattggccatattacc
aggactgtatctagaagtataagcataagtatatcattggaatctgcagt
tgccttttggtaaatcaggtttttcacaacaaatataaccctagttaaag
accagtttttatggaagg
gaattctctgtagggatgttagtgttgttcacataaggggaaggcagtag
tacaatgtatattggtgcacagtctccttgacaaggactttgtaaggaca
gagaaattctattggcttaatcaggtctattggggcctctccttctctta
atgccatcatattgagaacacttgaattttggaggagacacattcctcgt
gccccttccccaaatgggcttacggaacataaaaagtaatgacgtctgtt
taatacatgagatagctgtcatttgtgaaagtcttttatttctaccttct
tttatgtatgttgcagagtcacttggactggataaatcacaaattactcc
tacaagatcttccgactcctcagcttctttcagctttccctaatttaaca
acaggggtcagctgcttctgtccattggttgggtgcaatccacagatcca
aagaagttaagtaacaggagggcccaaggaatgatgcttgaatatccccc
aaaagggaaataaaatagacatgaagtgtggatggaaagagagaactggg
tgtgagatagagtgaggaggggaacaaaagaagtaggaatcaggtgtgga
gaaatcagggccaggggttgagagggaatatagagagaagggaaatagat
ggggatgcatctcccaggaaagccagagacctgtggtgggggagacacct
gggaggatatgggggtgaccatacctgagactcctagaagtggcagatat
ggagcccaaagtggccagcttctgtggcccggaaacacttccagtggagt
aagaaagacacccctttcataaaataaacttacccaaaatttgtccctgc
ttgcaagatatgtagagacaagatagaagttgagattgagggaaaggaca
aacaatgggcccactccaggactattaataaatacttttgttatgcttgc
aaaacaggcaccctagcataaactgtcatctgaaaagacttcatccacag
ctgatgaaaacagaatgtagagaccctacaggcaaacattaaggcaaact
ccaggaagtcttggtggaaaagtaacagggaaggattgaagggcaactgg
gaaggggctcaattgacccctaatagaagaaccttcctaagcccccctta
tccctggggctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_52365294_52366357
seq2: B6Ng01-179J12.b_44_1111

seq1  GAATTCTTTCTCTCTCTCTCTCTCTCCCTCTCTCTCCTTGACAAGCCCTC  50
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GAATTCTTTCTCTCTCTCTCTCTCTCCCTCTCTCTCCTTGAC-AGCCCTC  49

seq1  TTCTGTTTTTATTAAACAGGTTTTTACCCAGCATTCTATTAAATTCTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTTTATTAAACAGGTTTTTACCCAGCATTCTATTAAATTCTTAT  99

seq1  TTCACTAGGGATGTGTCCACATTTCAATTATTTTACAGCAATTTATTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTAGGGATGTGTCCACATTTCAATTATTTTACAGCAATTTATTCTT  149

seq1  TTTTGTTGATATATCTTAAAACAATGTTGTATATTTTCTCCACTCACATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTGATATATCTTAAAACAATGTTGTATATTTTCTCCACTCACATT  199

seq1  TAGGCTAATTTCCATTAATCTGGAAATATTATAAAGGCAAGAAAATTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTAATTTCCATTAATCTGGAAATATTATAAAGGCAAGAAAATTGCT  249

seq1  CCCTCACTCCTCCCTCTAAACAAGAGTGATCCTGCCAGTAAATTTTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCACTCCTCCCTCTAAACAAGAGTGATCCTGCCAGTAAATTTTTTGT  299

seq1  GTCTAACATGTATGTTGACTTAGCTTCTCACACATATGTTGAATATCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAACATGTATGTTGACTTAGCTTCTCACACATATGTTGAATATCCAT  349

seq1  ATGACTCAGGCTTATTGAAGTTAAACATATAAGAGACAATAATTAGAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTCAGGCTTATTGAAGTTAAACATATAAGAGACAATAATTAGAGTC  399

seq1  TAACTCGAGCTATACTCAGAAGCTGTCAGCTATTCTTGGTTTTATAATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCGAGCTATACTCAGAAGCTGTCAGCTATTCTTGGTTTTATAATGA  449

seq1  TTAGGAGATTCATTCTGCTTTGCTTTAATGACCTACCTACAAAATAATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAGATTCATTCTGCTTTGCTTTAATGACCTACCTACAAAATAATGG  499

seq1  TATTAATAACTACTGTCTCATAAGAATTTTCAGCCACACAAATAAAACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATAACTACTGTCTCATAAGAATTTTCAGCCACACAAATAAAACTA  549

seq1  TAAATTTTGGATTAAGAATGTATATAGACACTGTGAATAGTAGGTTTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTTGGATTAAGAATGTATATAGACACTGTGAATAGTAGGTTTTGA  599

seq1  GCTATTATCTTATGCCTTTGGGCTCTCTAGATTTTATGTCAACTTAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTATCTTATGCCTTTGGGCTCTCTAGATTTTATGTCAACTTAAAGA  649

seq1  CACAGGCTAGACTCGTTTGGGAAGAAAATACCAACTGAGCAACTACCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCTAGACTCGTTTGGGAAGAAAATACCAACTGAGCAACTACCTCA  699

seq1  ACAAGATTAGGTTTTGGACAAGCTTGTGGGGGCATTTCTTGATTAATGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATTAGGTTTTGGACAAGCTTGTGGGGGCATTTCTTGATTAATGAT  749

seq1  TAATGTTGGAGGGTCCAGCCCATGGGGAGGGTCCACCC-TTGGTGGCAGT  799
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TAATGTTGGAGGGTCCAGCCCATGGGGAGGGTCCACCCTTTGGTGGCAGT  799

seq1  TTGGTCCTGGAAAGGTAAGAAACCTAAGCAAACATTACGGAACAAGCCAG  849
      ||||||||||||||||||||||| |||||||||||||||| |||||||||
seq2  TTGGTCCTGGAAAGGTAAGAAACTTAAGCAAACATTACGG-ACAAGCCAG  848

seq1  TAGCTACACTCCTAAATGCCCTTTACACCAGCTGCTA-TCTCCAGCCTCC  898
      |||||||||||||||||| |||||||||||||||||| ||||||||||||
seq2  TAGCTACACTCCTAAATG-CCTTTACACCAGCTGCTATTCTCCAGCCTCC  897

seq1  TGCCGGATATAAG-TTCCTGTTTTGGCTTCCCTCAGTGATTGGCCATA-T  946
      ||||||||||||| |||||||||||||||||||||||||||||||||| |
seq2  TGCCGGATATAAGTTTCCTGTTTTGGCTTCCCTCAGTGATTGGCCATATT  947

seq1  ACCAGGACTGTATCCTAGAAGTATAAGCATAAGTATATCATT-GAATCTG  995
      ||||||||||||| |||||||||||||||||||||||||||| |||||||
seq2  ACCAGGACTGTAT-CTAGAAGTATAAGCATAAGTATATCATTGGAATCTG  996

seq1  CAAGTTG-CTTTTGGT-AATCAGGTTTTTCACAACAATATA-AACCCTAG  1042
      | ||||| |||||||| |||||||||||||||||||| ||| ||||||||
seq2  C-AGTTGCCTTTTGGTAAATCAGGTTTTTCACAACAA-ATATAACCCTAG  1044

seq1  TT-AAGA-CAGTTTTTATGGAAGG  1064
      || |||| ||||||||||||||||
seq2  TTAAAGACCAGTTTTTATGGAAGG  1068