BAC Information

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BAC

Clone NameB6Ng01-180P12
Chromosome19 (Build37)
Map Location 43,581,781 - 43,750,816
singlet/doubletdoublet
Overlap geneGot1, Nkx2-3, LOC100042700, LOC100043245, Slc25a28
Upstream geneD19Ertd386e, Loxl4, 4833409A17Rik, Hps1, LOC545291, EG627624, Cnnm1
Downstream geneEntpd7, Cox15, Cutc, Abcc2, Dnmbp, LOC668408, Cpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152, Scd2, Scd4, Scd1, Wnt8b, Sec31b, Ndufb8, Hif1an
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180P12.bB6Ng01-180P12.g
ACCGA007262GA007263
length910655
definitionB6Ng01-180P12.b B6Ng01-180P12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,581,781 - 43,582,688)(43,750,164 - 43,750,816)
sequence
gaattctctactgctcttctgtatcacccacctccagatcattcaggaaa
ccctggaggtccagtcctctcttctccgcatcccagtagcaatagggccg
aatgtccttaaaaccggcggcagaaaacacagcattatggttctctgcaa
agcaaagggacagatgctaagtgccttttaaacacaaggtggcagaatcg
gaaggaacacaggtgagttatgggccctcaggctcagtgtccactgggcg
tcgtagaggcttgccattgagttatactaggaacaagtctaaccagttat
aagaactccagacttggagcctacgactgggcagtctgcctcttatatcc
accatcatggaaccctaaggatagaatacaacggagtcttgggcaaaggt
gctcccagttgaaattggagcagtagctttctctggccgcagctagaagc
cagtgctcaatgactccccaaaacgcaccctcccagggataggttacatc
ttccacgcaagtcaccaagtgtcacaaggacagccctcccagatgcttgg
ctcgccccctctatggctagcaggctcaccccaggttggtgatgatacgt
agattggtgtgttcttgttatctgtaccattgtaccatcgccctaagaag
tcagctccaatccgaagagcgcctgtccctcccaaagactgcacccctcc
aacctgaaagagaagatttcgggtcacaggttgttgacaatgggtgagat
cggctaatattcgaaagagtaagacaattcatggttacatactttgtcct
ctttctgtctaagccccttaagtgtatgagtttcttcaaccatttgccgg
acgatcctattatgtgggtaaaccgagagacaggaaggcaagaagagacg
aagtccctgc
gaattcttaacccgaggttaacggaatctccttcacgctgaaacccgaaa
taaaaagcagttttgtgtgtgactggggatggggttgggaacttaagagc
tttattttccaagagatcacgacacaaacgttagtaactactgccaaaga
ttagttgaaagacccgtccgccgaagggctaagctttagagaggaaatgg
aaaagcctccaaccgttctaaggaagcgctacgaaaagatggaaaagttt
gcaattgcgtcatcatctcattaaaataggttgtaaaggcagagctagaa
actggggaagcgtgtgcaaacacgctgctgagaagggagcctgaggtagc
ctgcagaaccagcgagcggaaaggggccctcgctcctcagtagaggctga
ggctcgagagtcgcttcagtgcccgcttctgctcaaggtagtggccctga
ggaccagacgtccctagcatcgttttacaaccggggagcggttctcaaga
agcagcagctcagcggtcccggagagagagagcggacagccatcagaccc
ggtggagtttatcagcaagcgagctcgggatacgaagttcaagtgtatgt
ctcggaacaagctcccactccccaggcatcagcagttgctctgccgcgat
tggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_43581781_43582688
seq2: B6Ng01-180P12.b_45_954

seq1  GAATTCTCTACTGCTCTTCTGTATCACCCACCTCCAGATCATTCAGGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTACTGCTCTTCTGTATCACCCACCTCCAGATCATTCAGGAAA  50

seq1  CCCTGGAGGTCCAGTCCTCTCTTCTCCGCATCCCAGTAGCAATAGGGCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGAGGTCCAGTCCTCTCTTCTCCGCATCCCAGTAGCAATAGGGCCG  100

seq1  AATGTCCTTAAAACCGGCGGCAGAAAACACAGCATTATGGTTCTCTGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCTTAAAACCGGCGGCAGAAAACACAGCATTATGGTTCTCTGCAA  150

seq1  AGCAAAGGGACAGATGCTAAGTGCCTTTTAAACACAAGGTGGCAGAATCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGGGACAGATGCTAAGTGCCTTTTAAACACAAGGTGGCAGAATCG  200

seq1  GAAGGAACACAGGTGAGTTATGGGCCCTCAGGCTCAGTGTCCACTGGGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAACACAGGTGAGTTATGGGCCCTCAGGCTCAGTGTCCACTGGGCG  250

seq1  TCGTAGAGGCTTGCCATTGAGTTATACTAGGAACAAGTCTAACCAGTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTAGAGGCTTGCCATTGAGTTATACTAGGAACAAGTCTAACCAGTTAT  300

seq1  AAGAACTCCAGACTTGGAGCCTACGACTGGGCAGTCTGCCTCTTATATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTCCAGACTTGGAGCCTACGACTGGGCAGTCTGCCTCTTATATCC  350

seq1  ACCATCATGGAACCCTAAGGATAGAATACAACGGAGTCTTGGGCAAAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCATGGAACCCTAAGGATAGAATACAACGGAGTCTTGGGCAAAGGT  400

seq1  GCTCCCAGTTGAAATTGGAGCAGTAGCTTTCTCTGGCCGCAGCTAGAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCAGTTGAAATTGGAGCAGTAGCTTTCTCTGGCCGCAGCTAGAAGC  450

seq1  CAGTGCTCAATGACTCCCCAAAACGCACCCTCCCAGGGATAGGTTACATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTCAATGACTCCCCAAAACGCACCCTCCCAGGGATAGGTTACATC  500

seq1  TTCCACGCAAGTCACCAAGTGTCACAAGGACAGCCCTCCCAGATGCTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACGCAAGTCACCAAGTGTCACAAGGACAGCCCTCCCAGATGCTTGG  550

seq1  CTCGCCCCCTCTATGGCTAGCAGGCTCACCCCAGGTTGGTGATGATACGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCCCCCTCTATGGCTAGCAGGCTCACCCCAGGTTGGTGATGATACGT  600

seq1  AGATTGGTGTGTTCTTGTTATCTGTACCATTGTACCATCGCCCTAAGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGGTGTGTTCTTGTTATCTGTACCATTGTACCATCGCCCTAAGAAG  650

seq1  TCAGCTCCAATCCGAAGAGCGCCTGTCCCTCCCAAAGACTGCACCCCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCCAATCCGAAGAGCGCCTGTCCCTCCCAAAGACTGCACCCCTCC  700

seq1  AACCTGAAAGAGAAGATTTCGGGTCACAGGTTGTTGACAAT-GGTGAGAT  749
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AACCTGAAAGAGAAGATTTCGGGTCACAGGTTGTTGACAATGGGTGAGAT  750

seq1  CGGCTAATATTCGAAAGAGTAAGACAA-TCATGGTAACATACTTTGTCCT  798
      ||||||||||||||||||||||||||| ||||||| ||||||||||||||
seq2  CGGCTAATATTCGAAAGAGTAAGACAATTCATGGTTACATACTTTGTCCT  800

seq1  CTTTCTGTCTAAAGCCCCTTAAGTGTATGAGTTCCTCAAACCA-TTGCCG  847
      |||||||||| |||||||||||||||||||||| ||  ||||| ||||||
seq2  CTTTCTGTCT-AAGCCCCTTAAGTGTATGAGTTTCTTCAACCATTTGCCG  849

seq1  GACGATCCTATTATGTGGGTAAACCGAGAGACAGGAAGGCAAGAAGAGAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGATCCTATTATGTGGGTAAACCGAGAGACAGGAAGGCAAGAAGAGAC  899

seq1  GAAGTCCCTGC  908
      |||||||||||
seq2  GAAGTCCCTGC  910

seq1: chr19_43750164_43750816
seq2: B6Ng01-180P12.g_71_725 (reverse)

seq1  TCCCAATCGCGGCAGAGCAACTGCTGATGCCT-GGGAGT-GGAGCTTGTT  48
      |||||||||||||||||||||||||||||||| |||||| ||||||||||
seq2  TCCCAATCGCGGCAGAGCAACTGCTGATGCCTGGGGAGTGGGAGCTTGTT  50

seq1  CCGAGACATACACTTGAACTTCGTATCCCGAGCTCGCTTGCTGATAAACT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGACATACACTTGAACTTCGTATCCCGAGCTCGCTTGCTGATAAACT  100

seq1  CCACCGGGTCTGATGGCTGTCCGCTCTCTCTCTCCGGGACCGCTGAGCTG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCGGGTCTGATGGCTGTCCGCTCTCTCTCTCCGGGACCGCTGAGCTG  150

seq1  CTGCTTCTTGAGAACCGCTCCCCGGTTGTAAAACGATGCTAGGGACGTCT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCTTGAGAACCGCTCCCCGGTTGTAAAACGATGCTAGGGACGTCT  200

seq1  GGTCCTCAGGGCCACTACCTTGAGCAGAAGCGGGCACTGAAGCGACTCTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTCAGGGCCACTACCTTGAGCAGAAGCGGGCACTGAAGCGACTCTC  250

seq1  GAGCCTCAGCCTCTACTGAGGAGCGAGGGCCCCTTTCCGCTCGCTGGTTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCAGCCTCTACTGAGGAGCGAGGGCCCCTTTCCGCTCGCTGGTTC  300

seq1  TGCAGGCTACCTCAGGCTCCCTTCTCAGCAGCGTGTTTGCACACGCTTCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCTACCTCAGGCTCCCTTCTCAGCAGCGTGTTTGCACACGCTTCC  350

seq1  CCAGTTTCTAGCTCTGCCTTTACAACCTATTTTAATGAGATGATGACGCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTCTAGCTCTGCCTTTACAACCTATTTTAATGAGATGATGACGCA  400

seq1  ATTGCAAACTTTTCCATCTTTTCGTAGCGCTTCCTTAGAACGGTTGGAGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAAACTTTTCCATCTTTTCGTAGCGCTTCCTTAGAACGGTTGGAGG  450

seq1  CTTTTCCATTTCCTCTCTAAAGCTTAGCCCTTCGGCGGACGGGTCTTTCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCATTTCCTCTCTAAAGCTTAGCCCTTCGGCGGACGGGTCTTTCA  500

seq1  ACTAATCTTTGGCAGTAGTTACTAACGTTTGTGTCGTGATCTCTTGGAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATCTTTGGCAGTAGTTACTAACGTTTGTGTCGTGATCTCTTGGAAA  550

seq1  ATAAAGCTCTTAAGTTCCCAACCCCATCCCCAGTCACACACAAAACTGCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCTCTTAAGTTCCCAACCCCATCCCCAGTCACACACAAAACTGCT  600

seq1  TTTTATTTCGGGTTTCAGCGTGAAGGAGATTCCGTTAACCTCGGGTTAAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTCGGGTTTCAGCGTGAAGGAGATTCCGTTAACCTCGGGTTAAG  650

seq1  AATTC  653
      |||||
seq2  AATTC  655