BAC Information

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BAC

Clone NameB6Ng01-183A13
Chromosome19 (Build37)
Map Location 20,068,147 - 20,069,285
singlet/doubletsinglet
Overlap genenone
Upstream geneRorb
Downstream geneLOC100042218, LOC100041541, Anxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549, Aldh1a1, Aldh1a7, Tmc1, LOC100042287
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183A13.bB6Ng01-183A13.g
ACCGA008765GA008766
length1,2441,152
definitionB6Ng01-183A13.b B6Ng01-183A13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatgctcaagcgttatgatatttggctatttttcattgggaaat
ttttaacgacttcttctatttctttatgggactgtttagatagtttacct
tcttttaatttaattttggtatgtggtatttggatagaaaaatcatcatt
ttgtctagattttccatttgtattgagtatgggctttggtaggaagttct
gatgatttttttttttaatttcctcagtttctcctgttaagtcccccttt
tcattttttattttattaatttggatgttatctctgggatctttaattgc
tttggctatgggtttatctatcttgttgatttactcaaagaactaggtgt
tggttttgcgattctttgtattgttctctttgtttctaactgtttgattt
tgaccctgagtttgactatttcctaccatctactcctcttggttgtgttt
gctattttttgttctatgacttttaggtgtgctgttaagttgctagtgta
agatccctctactttctttacaaggatacttagtgctatgaattttcctc
ttagcattgcttttaccttgcacaaaactcaactccaagtggatcaagga
cctcatcctaaaatcaggtatactgaatctaatataatagaaatgtgcca
tggaccgggctccgttggcctctctcaatccgtggaaaatcatggttttg
gacagatgggcagggagtcagcaagaattgacaaacagacacagacacaa
gagagtgctgaatctgaatatattttctccaagcaaacaccaggctttga
ataaacaagaaaaataagaaggctaggtaagtacatccctaaggtacact
ggttcttaacacgaaacaaagaaaatgtatacatgaaaagatagtaggag
ccaggccttgtttacaactgagaataggaacaaccctaattaagatcagc
taaacacaggagccaggtgaatgctctgatgcaatgctagtctattttta
aacccacaccagaggttcttaggtaaatacctgattatgctatttcttct
gggttctagtgaaaagacctgcaccagtgggaattcccttctactaaccc
ttcagtactacacccaactatttctaagccattgtgtgatatgcaaccct
accaacggcacccccttctttgccaatgcaggctcactctgaggctaagt
tcttcaagggttagagcacaactttctctctcaaagtaggggac

gaattctcagagaagatggtaattaatgtaactactaataccatatgtgg
tgatttgccttcatgaccaaaacaactaaaaatataaagcaatggctgtc
tcaaaagcttaaattgctttctctgttggatcatattagggtctcagaag
taccttagctttagattgaattgttctaatgaaaatttctacctaacaca
gaatttctaagtaactactgtttagtcccttggacggtttttttatggca
tgttagtgatggcattctatcatcaagttaatatttattgattgatatta
aattctgatttgccaatgcatattggctatatgcattatagatgacctat
taagcatgggcttatgtataaatatacacacatatgtgcaaccatgcctc
aaacatatacaactctcttaaaatagcaaaaggatattagaaagtttgct
aagcacaatgggaaaaaaagcaagaaaatagactatagggtctatattct
atttttgcactccacaaagttgtaaaataagtatgtgatttttttttctc
tgctattagatttagaacaggaagaatgcctgttctttacctatgttagg
aaaacagatatgcaatgaggaagtgaaaatcatcctcaccaatgtagtgt
ctgtgactacaaagaatggttaaagtttgtagtgttagtggtaccgtgag
acaaatggggatgactgttaagtagccacactatcttcaaccactttttt
ctagccaaaaaagaaaaataaatgtatttcacattgtaaactgctaactt
cctgtcatcatttgcttcgcaaattgtgtctttagcttttatacattcat
ataaagttatgcatggcttaagtgatgtagtaaatagttaaaacatgaaa
gctcctgcctctctggttgtaaagtacccactagatttcagcacacttgg
cacatggaataatgcttcagagccatttcaagtctgaaacagcttcgggt
ggtaccatttaggcttggagggtatattggccagaacaggaatacgacta
atctattttggcttaagctaccttattactcatattcctcttctccgctg
cattcacaccttcaataacaactgtattatggaattacccaacatatatt
ta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_20068147_20069285
seq2: B6Ng01-183A13.g_64_1215 (reverse)

seq1  TAAATATATG-TGTGTA---TCAT-ATACAGTTTGTTAATTGAA-GTGTG  44
      |||||||||| || |||    ||| |||||| ||||| |||||| |||||
seq2  TAAATATATGTTGGGTAATTCCATAATACAG-TTGTT-ATTGAAGGTGTG  48

seq1  AATGCAGCGGAG-AGA-GAATATGAGTAAT-AGGTAGCTTAAGCCAAAAT  91
      |||||||||||| ||| ||||||||||||| |||||||||||||||||| 
seq2  AATGCAGCGGAGAAGAGGAATATGAGTAATAAGGTAGCTTAAGCCAAAA-  97

seq1  TAGATTAGTCGTATCCCTGTTCT-GCCAATATACC--TCAAGCTTAAATG  138
      |||||||||||||| |||||||| |||||||||||   ||||| ||||||
seq2  TAGATTAGTCGTATTCCTGTTCTGGCCAATATACCCTCCAAGCCTAAATG  147

seq1  GTACCA-CCGAAGCTGTTTCAGACTTG-AATGGCTCTGAAGCATTA-TCC  185
      |||||| |||||||||||||||||||| |||||||||||||||||| |||
seq2  GTACCACCCGAAGCTGTTTCAGACTTGAAATGGCTCTGAAGCATTATTCC  197

seq1  ATGTGCCAAGTGTGCTGAAATCTAGT-GGTACTTTACAACCAGAGAGGCA  234
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATGTGCCAAGTGTGCTGAAATCTAGTGGGTACTTTACAACCAGAGAGGCA  247

seq1  GGAGCTTTCATGTTTTAACTATTTACTACATCACTTAAGCCATGCATAAC  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTTTCATGTTTTAACTATTTACTACATCACTTAAGCCATGCATAAC  297

seq1  TTTATATGAATGTATAAAAGCTAAAGACACAATTTGCGAAGCAAATGATG  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATGAATGTATAAAAGCTAAAGACACAATTTGCGAAGCAAATGATG  347

seq1  ACAGGAAGTTAGCAGTTTACAATGTGAAATACATTTATTTTTCTTTTTTG  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAGTTAGCAGTTTACAATGTGAAATACATTTATTTTTCTTTTTTG  397

seq1  GCTAGAAAAAAGTGGTTGAAGATAGTGTGGCTACTTAACAGTCATCCCCA  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAAAAAAGTGGTTGAAGATAGTGTGGCTACTTAACAGTCATCCCCA  447

seq1  TTTGTCTCACGGTACCACTAACACTACAAACTTTAACCATTCTTTGTAGT  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTCACGGTACCACTAACACTACAAACTTTAACCATTCTTTGTAGT  497

seq1  CACAGACACTACATTGGTGAGGATGATTTTCACTTCCTCATTGCATATCT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACACTACATTGGTGAGGATGATTTTCACTTCCTCATTGCATATCT  547

seq1  GTTTTCCTAACATAGGTAAAGAACAGGCATTCTTCCTGTTCTAAATCTAA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCTAACATAGGTAAAGAACAGGCATTCTTCCTGTTCTAAATCTAA  597

seq1  TAGCAGAGAAAAAAAAATCACATACTTATTTTACAACTTTGTGGAGTGCA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGAGAAAAAAAAATCACATACTTATTTTACAACTTTGTGGAGTGCA  647

seq1  AAAATAGAATATAGACCCTATAGTCTATTTTCTTGCTTTTTTTCCCATTG  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGAATATAGACCCTATAGTCTATTTTCTTGCTTTTTTTCCCATTG  697

seq1  TGCTTAGCAAACTTTCTAATATCCTTTTGCTATTTTAAGAGAGTTGTATA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAGCAAACTTTCTAATATCCTTTTGCTATTTTAAGAGAGTTGTATA  747

seq1  TGTTTGAGGCATGGTTGCACATATGTGTGTATATTTATACATAAGCCCAT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGAGGCATGGTTGCACATATGTGTGTATATTTATACATAAGCCCAT  797

seq1  GCTTAATAGGTCATCTATAATGCATATAGCCAATATGCATTGGCAAATCA  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAATAGGTCATCTATAATGCATATAGCCAATATGCATTGGCAAATCA  847

seq1  GAATTTAATATCAATCAATAAATATTAACTTGATGATAGAATGCCATCAC  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTAATATCAATCAATAAATATTAACTTGATGATAGAATGCCATCAC  897

seq1  TAACATGCCATAAAAAAACCGTCCAAGGGACTAAACAGTAGTTACTTAGA  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGCCATAAAAAAACCGTCCAAGGGACTAAACAGTAGTTACTTAGA  947

seq1  AATTCTGTGTTAGGTAGAAATTTTCATTAGAACAATTCAATCTAAAGCTA  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGTGTTAGGTAGAAATTTTCATTAGAACAATTCAATCTAAAGCTA  997

seq1  AGGTACTTCTGAGACCCTAATATGATCCAACAGAGAAAGCAATTTAAGCT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACTTCTGAGACCCTAATATGATCCAACAGAGAAAGCAATTTAAGCT  1047

seq1  TTTGAGACAGCCATTGCTTTATATTTTTAGTTGTTTTGGTCATGAAGGCA  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGACAGCCATTGCTTTATATTTTTAGTTGTTTTGGTCATGAAGGCA  1097

seq1  AATCACCACATATGGTATTAGTAGTTACATTAATTACCATCTTCTCTGAG  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACCACATATGGTATTAGTAGTTACATTAATTACCATCTTCTCTGAG  1147

seq1  AATTC  1139
      |||||
seq2  AATTC  1152


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