BAC Information

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BAC

Clone NameB6Ng01-183B01
Chromosome19 (Build37)
Map Location 34,251,762 - 34,374,545
singlet/doubletdoublet
Overlap geneStambpl1, Acta2, Fas
Upstream gene6530404N21Rik, LOC638381, EG668095, LOC628236, AI747699, EG668106, EG668112, EG668114, EG329055, EG433241, LOC668127, Lipf, Lipk, EG383462, Lipn, Ankrd22
Downstream geneCh25h, Lipa, Ifit2, Ifit3, OTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1, Slc16a12, LOC676714, Pank1, Mphosph1, LOC383464
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183B01.bB6Ng01-183B01.g
ACCGA008789GA008790
length392173
definitionB6Ng01-183B01.b B6Ng01-183B01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,374,148 - 34,374,545)(34,251,762 - 34,251,936)
sequence
tcacaaggaatcccacaatcgtgggtacctgttaacagattatgagaaac
agataccagtgggcattttcttggcctgaagcctagtggagaagtgcttt
tcagagccactcaagttatcaaacagaagacatggtagaggaatgagcac
acccaggaggactggcccctgtgccatggcaccctctaggacaagctcac
cacatcttcccaggacatgtcagcactcaagaagtaagaagccagtgacg
agcccagtgacacacaggtgactgaaataagctacctacttgaagacctg
aacctcctgtaaatatggctggtgcctggggctaagtagggcaaaggatc
ttaagggctgaactagatttgagagagagagagagagagaga
tgctctgttcattcaatggccagcttcaagtaaagaccattaagtgttgt
ggggcaggagggggggcgggggaggggtggctaatttcctgatagagaac
tttcttctgaatgctcagacttccagtgcataaggaaataactgccccaa
ttttcattgtctttttagatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_34374148_34374545
seq2: B6Ng01-183B01.b_43_440 (reverse)

seq1  TCTCTCTCTCTCTCTCTCTCTCAAATCTAGTTCAGCCCTTAAGATCCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCAAATCTAGTTCAGCCCTTAAGATCCTTT  50

seq1  GCCCTACTTAGCCCCAGGCACCAGCCATATTTACAGGAGGTTCAGGTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTACTTAGCCCCAGGCACCAGCCATATTTACAGGAGGTTCAGGTCTT  100

seq1  CAAGTAGGTAGCTTATTTCAGTCACCTGTGTGTCACTGGGCTCGTCACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAGGTAGCTTATTTCAGTCACCTGTGTGTCACTGGGCTCGTCACTG  150

seq1  GCTTCTTACTTCTTGAGTGCTGACATGTCCTGGGAAGATGTGGTGAGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTACTTCTTGAGTGCTGACATGTCCTGGGAAGATGTGGTGAGCTT  200

seq1  GTCCTAGAGGGTGCCATGGCACAGGGGCCAGTCCTCCTGGGTGTGCTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAGAGGGTGCCATGGCACAGGGGCCAGTCCTCCTGGGTGTGCTCAT  250

seq1  TCCTCTACCATGTCTTCTGTTTGATAACTTGAGTGGCTCTGAAAAGCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTACCATGTCTTCTGTTTGATAACTTGAGTGGCTCTGAAAAGCACT  300

seq1  TCTCCACTAGGCTTCAGGCCAAGAAAATGCCCACTGGTATCTGTTTCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACTAGGCTTCAGGCCAAGAAAATGCCCACTGGTATCTGTTTCTCA  350

seq1  TAATCTGTTAACAGGTACCCACGATTGTGGGATTCCTTGTGAGAATTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTGTTAACAGGTACCCACGATTGTGGGATTCCTTGTGAGAATTC  398

seq1: chr19_34251762_34251936
seq2: B6Ng01-183B01.g_69_241

seq1  TGCTCTGTTCATTCAATGGCCAGCTTCAAGTAAAGACCATTAAGTGTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGTTCATTCAATGGCCAGCTTCAAGTAAAGACCATTAAGTGTTGT  50

seq1  GGGGCAGGAGGGGGGGCGGGGGAGGGGTGACACTAATTTCCTGATAGAGA  100
      |||||||||||||||||||||||||||||   ||||||||||||||||||
seq2  GGGGCAGGAGGGGGGGCGGGGGAGGGGTG--GCTAATTTCCTGATAGAGA  98

seq1  ACTTTCTTCTGAATGCTCAGACTTCCAGTGCATAAGGATATAACTGCCCC  150
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACTTTCTTCTGAATGCTCAGACTTCCAGTGCATAAGGAAATAACTGCCCC  148

seq1  AATTTTCATTGTCTTGCCAGATATA  175
      |||||||||||||||   |||||||
seq2  AATTTTCATTGTCTTTTTAGATATA  173