BAC Information

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BAC

Clone NameB6Ng01-186E02
Chromosome19 (Build37)
Map Location 18,205,218 - 18,330,561
singlet/doubletdoublet
Overlap genenone
Upstream geneA230083H22Rik, Gcnt1, Rfk, Pcsk5, Eef1a1-ps1
Downstream geneLOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6, Rorb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186E02.bB6Ng01-186E02.g
ACCGA011147GA011148
length1,1601,164
definitionB6Ng01-186E02.b B6Ng01-186E02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,205,218 - 18,206,396)(18,329,384 - 18,330,561)
sequence
gaattctctactgatgggtctaggttttataaattttcagaatactaaac
tttatcatcttgtcttcaactgcaaactatttcagggagataaatattgt
ctaatcttctgtttgtagttagacttgaaagtgctaacattatgagtctc
atattttttattttgcttttaacatttaaaaatcactgcaaacgtttttt
tctaaagtatgttctcaccatgatagacagtttaggaatttatattttct
tgtagttttttttaaaagctccttgtcagcagcagccttctctcaaacca
catctactgtgttcacttacttgtgttgcttggcttgtgccctaatggcc
tgtctgttctctcattaccctcctaggctggagctagccccagttgaaca
ttcttaggaagttgatgtcttgtttagctccacatacttctcttcttaga
gagaggggggcaaatgaggataactgtctgctaagggatgcgcagaggac
acagataatccatcgccctatcgggacaatcatgtgtgagaagaggatcc
aagaacagtctttccacttacatcaaccattctctaagtctggctccttt
ccagcacctattcctatttcacctcctattttctatcattccagaacaga
cgggttgcatcagttaaaaagctagcttaagaagactttgactctctggc
tgatccccatcccaccccagttgctaccagtctatactacaatgtaacct
taggcactgtgcctacacttaaagtaggaggcaccaaaagggtccaagtt
acttggtgaaatgtgaatggcttagtgtctcttaagcagaaatgaggtaa
atatatgttctttaattcacaagtgtgttaaagtaaaaattagtccaagc
gtgctatttctcaaaggacactggtgttttttagactgaagatccctgct
ccacagtgagtagtaattcttgtgttccaagggttttgtttgttttgttt
ttcatcaagtgaatttttccctatatttgaaatagattttctctcacata
tatatctattatggttttttctcatctcctcctccaggtatctccactcc
ctccatggattctactccatctgcttcattgaaaaatggacaaggcttct
aagcataata
gaattccaatagaagaataagagtgaagagcgatttgtctgcaacagaac
atgtgatccattgtgacttgagagtattcggaagtaacaagttcactgcc
ttttgtgtcctaaaagctcaagaaagtgtcctgattattgggcattctga
ttagtctgcattcttaattagttttcctttctggtgataaaatagatacg
gtaaacaacttaaaaggagggagagttggtttgtgttcacgttttcaaag
gtttttggtcagggttgtttggcttggtcaggatgcacttgtagtggggc
ctcagagagcatcacggcagggggtgatcagtgaagcaaagctgctcaca
caaaggagtccaaaaagcatcatccagggtcccttttgctttgccctccc
acactttgataagagattgcacacttctaaccacaacagcctatgggctg
cttgttctccctgttgcggagacacggatttggataaaggaggttttctt
agagtagactgctattacttgtttgcgccaggattctgtgaatctctgac
cttccaatgtgctttctgcacacatgcgcacttccctgagttcagataaa
tactggtacgggtctggctctttgggcacattgacatcgttcttgttccc
tctgctgttggtaactgcagcagctcaactattatcccgtggtttctttc
ctccattttctctttgattaccaatgagaattcaaagatttcaaagtttc
agccagctgtgcgcagcattgtgttaccgctccactcttgccatcgctgg
cggctcagctgccgtaaatccactcccttacatctcttgttttaaacata
ggaatctgattacagcgagctgggttttgctagattgtagaaaatgccct
cagaaggactgcagggaacaggaaatttatatatgggctgaactttttaa
gtagcagtcaacgggggtaatttacattaaagaaaaccagcatgagctgc
cttggatctacagcactttttgtagaaatgaaatatcatacttctaccaa
aatggatcgattgtcaatgccacagaagttcctttcaatctgtaacggtt
ggaaactcagcacttagattgagcctgattcatgggtaactgaatactct
cagatatcatttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_18205218_18206396
seq2: B6Ng01-186E02.b_42_1201

seq1  GAATTCTCTACTGATGGGTCTAGGTTTTATAAATTTTCAGAATACTAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTACTGATGGGTCTAGGTTTTATAAATTTTCAGAATACTAAAC  50

seq1  TTTATCATCTTGTCTTCAACTGCAAACTATTTCAGGGAGATAAATATTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCATCTTGTCTTCAACTGCAAACTATTTCAGGGAGATAAATATTGT  100

seq1  CTAATCTTCTGTTTGTAGTTAGACTTGAAAGTGCTAACATTATGAGTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCTTCTGTTTGTAGTTAGACTTGAAAGTGCTAACATTATGAGTCTC  150

seq1  ATATTTTTTATTTTGCTTTTAACATTTAAAAATCACTGCAAACGTTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTTATTTTGCTTTTAACATTTAAAAATCACTGCAAACGTTTTTT  200

seq1  TCTAAAGTATGTTCTCACCATGATAGACAGTTTAGGAATTTATATTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGTATGTTCTCACCATGATAGACAGTTTAGGAATTTATATTTTCT  250

seq1  TGTAGTTTTTTTTAAAAGCTCCTTGTCAGCAGCAGCCTTCTCTCAAACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTTTTTTTAAAAGCTCCTTGTCAGCAGCAGCCTTCTCTCAAACCA  300

seq1  CATCTACTGTGTTCACTTACTTGTGTTGCTTGGCTTGTGCCCTAATGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACTGTGTTCACTTACTTGTGTTGCTTGGCTTGTGCCCTAATGGCC  350

seq1  TGTCTGTTCTCTCATTACCCTCCTAGGCTGGAGCTAGCCCCAGTTGAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTTCTCTCATTACCCTCCTAGGCTGGAGCTAGCCCCAGTTGAACA  400

seq1  TTCTTAGGAAGTTGATGTCTTGTTTAGCTCCACATACTTCTCTTCTTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGGAAGTTGATGTCTTGTTTAGCTCCACATACTTCTCTTCTTAGA  450

seq1  GAGAGGGGGGCAAATGAGGATAACTGTCTGCTAAGGGATGCGCAGAGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGGGGCAAATGAGGATAACTGTCTGCTAAGGGATGCGCAGAGGAC  500

seq1  ACAGATAATCCATCGCCCTATCGGGACAATCATGTGTGAGAAGAGGATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATAATCCATCGCCCTATCGGGACAATCATGTGTGAGAAGAGGATCC  550

seq1  AAGAACAGTCTTTCCACTTACATCAACCATTCTCTAAGTCTGGCTCCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAGTCTTTCCACTTACATCAACCATTCTCTAAGTCTGGCTCCTTT  600

seq1  CCAGCACCTATTCCTATTTCACCTCCTATTTTCTATCATTCCAGAACAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACCTATTCCTATTTCACCTCCTATTTTCTATCATTCCAGAACAGA  650

seq1  CGGGTTGCATCAGTTAAAAAGCTAGCTTAAGAAGACTTTGACTCTCTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTTGCATCAGTTAAAAAGCTAGCTTAAGAAGACTTTGACTCTCTGGC  700

seq1  TGATCCCCATCCCACCCCAGTTGCTACCAGTCTATACTACAATGTAACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCCCATCCCACCCCAGTTGCTACCAGTCTATACTACAATGTAACCT  750

seq1  TAGGCACTGTGCCTACACTTAAAGTAGGAGGCACCAAAAGGGTCCAAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCACTGTGCCTACACTTAAAGTAGGAGGCACCAAAAGGGTCCAAGTT  800

seq1  ACTTGGTGAAATGTGAATGGCTTAGTGTCTCTTAAGCAGAAATGAGGTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTGAAATGTGAATGGCTTAGTGTCTCTTAAGCAGAAATGAGGTAA  850

seq1  ATATATGTTCTTTAATTCACAAGTGTGTTAAAGTAAAAATTAGTCCAAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTTCTTTAATTCACAAGTGTGTTAAAGTAAAAATTAGTCCAAGC  900

seq1  GTGCTATTTCTCAAAGGACACTGGTGTTTTTTAGACTGAAGATCCCTGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTATTTCTCAAAGGACACTGGTGTTTTTTAGACTGAAGATCCCTGCT  950

seq1  CCACAGTGAGTAGTAATTCTTGTGTTCCAAGGTTTTGTTTTGTTTTGTTT  1000
      |||||||||||||||||||||||||||||||| |||  ||||||||||||
seq2  CCACAGTGAGTAGTAATTCTTGTGTTCCAAGGGTTTTGTTTGTTTTGTTT  1000

seq1  TTCATCAAGTG-ATTTTTCCCTATATTTGAAAATAGATTTTCTCCTTCAC  1049
      ||||||||||| ||||||||||||||||| ||||||||||||||  ||||
seq2  TTCATCAAGTGAATTTTTCCCTATATTTG-AAATAGATTTTCTC--TCAC  1047

seq1  ATAATATATCCTAATTATGGTTTTTCTCCCATCTCCTCCTCCCAGTTTTT  1099
      || |||||||   |||||||||||| || |||||||||||||  |  | |
seq2  AT-ATATATC--TATTATGGTTTTT-TCTCATCTCCTCCTCCAGG--TAT  1091

seq1  CTCCACTTCCCCTCCCATTGGTATCTACTCCCCTTCTGCCTCCCATTGAA  1149
      |||||||  ||||||   |||  ||||||  || ||||| |  |||||  
seq2  CTCCACT--CCCTCC--ATGGATTCTACT--CCATCTGCTT--CATTG--  1131

seq1  AAAAAATGAGCAA-GCTTCTAAGGGATAATA  1179
       |||||||  ||| |||||||| | ||||||
seq2  -AAAAATGGACAAGGCTTCTAA-GCATAATA  1160

seq1: chr19_18329384_18330561
seq2: B6Ng01-186E02.g_63_1226 (reverse)

seq1  TTAAATG-TATCTGAGAGGTTTCAATTTTACACTAAATCAGTGTTTCAAT  49
      | ||||| ||||||||||  |||| ||   || | |||||  |  |||| 
seq2  TAAAATGATATCTGAGAGTATTCAGTTACCCA-TGAATCA--GGCTCAA-  46

seq1  TCTTAGTTGCTGGATTTTTCAAACTGTTTACAGA-TGAAAAGAAC-TCTG  97
      ||| || |||| || ||| ||| |   ||||||| ||||| |||| ||||
seq2  TCTAAG-TGCT-GAGTTTCCAACC--GTTACAGATTGAAAGGAACTTCTG  92

seq1  TGGGCATTGAACCATTCGATCCATTTTGGTTAGAAGTATGATATTTTCAT  147
      | ||||||||  || |||||||||||||| ||||||||||||| ||||||
seq2  T-GGCATTGA--CAATCGATCCATTTTGG-TAGAAGTATGATA-TTTCAT  137

seq1  TTCTAACAAAAGTGCCTGTAGATCCCAAGGCAGCCTCATGCTGGGTTTTC  197
      |||||  ||||||| |||||||| ||||||||| |||||||| |||||||
seq2  TTCTACAAAAAGTG-CTGTAGAT-CCAAGGCAG-CTCATGCT-GGTTTTC  183

seq1  TTTAATGTAAATTACCCCCGTGGACTGCTACTTAAAAAGTTCAGCCAATA  247
      ||||||||||||||||||||| |||||||||||||||||||||||| |||
seq2  TTTAATGTAAATTACCCCCGTTGACTGCTACTTAAAAAGTTCAGCCCATA  233

seq1  TATAAATTTCCTGTTCCCTGCAGTCCTTCTGAGGGCATTTTCTACAATCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATTTCCTGTTCCCTGCAGTCCTTCTGAGGGCATTTTCTACAATCT  283

seq1  AGCAAAACCCAGCTCGCTGTAATCAGATTCCTATGTTTAAAACAAGAGAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAACCCAGCTCGCTGTAATCAGATTCCTATGTTTAAAACAAGAGAT  333

seq1  GTAAGGGAGTGGATTTACGGCAGCTGAGCCGCCAGCGATGGCAAGAGTGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGGAGTGGATTTACGGCAGCTGAGCCGCCAGCGATGGCAAGAGTGG  383

seq1  AGCGGTAACACAATGCTGCGCACAGCTGGCTGAAACTTTGAAATCTTTGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGTAACACAATGCTGCGCACAGCTGGCTGAAACTTTGAAATCTTTGA  433

seq1  ATTCTCATTGGTAATCAAAGAGAAAATGGAGGAAAGAAACCACGGGATAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCATTGGTAATCAAAGAGAAAATGGAGGAAAGAAACCACGGGATAA  483

seq1  TAGTTGAGCTGCTGCAGTTACCAACAGCAGAGGGAACAAGAACGATGTCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGAGCTGCTGCAGTTACCAACAGCAGAGGGAACAAGAACGATGTCA  533

seq1  ATGTGCCCAAAGAGCCAGACCCGTACCAGTATTTATCTGAACTCAGGGAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCCCAAAGAGCCAGACCCGTACCAGTATTTATCTGAACTCAGGGAA  583

seq1  GTGCGCATGTGTGCAGAAAGCACATTGGAAGGTCAGAGATTCACAGAATC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGCATGTGTGCAGAAAGCACATTGGAAGGTCAGAGATTCACAGAATC  633

seq1  CTGGCGCAAACAAGTAATAGCAGTCTACTCTAAGAAAACCTCCTTTATCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCGCAAACAAGTAATAGCAGTCTACTCTAAGAAAACCTCCTTTATCC  683

seq1  AAATCCGTGTCTCCGCAACAGGGAGAACAAGCAGCCCATAGGCTGTTGTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCGTGTCTCCGCAACAGGGAGAACAAGCAGCCCATAGGCTGTTGTG  733

seq1  GTTAGAAGTGTGCAATCTCTTATCAAAGTGTGGGAGGGCAAAGCAAAAGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAAGTGTGCAATCTCTTATCAAAGTGTGGGAGGGCAAAGCAAAAGG  783

seq1  GACCCTGGATGATGCTTTTTGGACTCCTTTGTGTGAGCAGCTTTGCTTCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGGATGATGCTTTTTGGACTCCTTTGTGTGAGCAGCTTTGCTTCA  833

seq1  CTGATCACCCCCTGCCGTGATGCTCTCTGAGGCCCCACTACAAGTGCATC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCACCCCCTGCCGTGATGCTCTCTGAGGCCCCACTACAAGTGCATC  883

seq1  CTGACCAAGCCAAACAACCCTGACCAAAAACCTTTGAAAACGTGAACACA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCAAGCCAAACAACCCTGACCAAAAACCTTTGAAAACGTGAACACA  933

seq1  AACCAACTCTCCCTCCTTTTAAGTTGTTTACCGTATCTATTTTATCACCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAACTCTCCCTCCTTTTAAGTTGTTTACCGTATCTATTTTATCACCA  983

seq1  GAAAGGAAAACTAATTAAGAATGCAGACTAATCAGAATGCCCAATAATCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAAAACTAATTAAGAATGCAGACTAATCAGAATGCCCAATAATCA  1033

seq1  GGACACTTTCTTGAGCTTTTAGGACACAAAAGGCAGTGAACTTGTTACTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACTTTCTTGAGCTTTTAGGACACAAAAGGCAGTGAACTTGTTACTT  1083

seq1  CCGAATACTCTCAAGTCACAATGGATCACATGTTCTGTTGCAGACAAATC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAATACTCTCAAGTCACAATGGATCACATGTTCTGTTGCAGACAAATC  1133

seq1  GCTCTTCACTCTTATTCTTCTATTGGAATTC  1178
      |||||||||||||||||||||||||||||||
seq2  GCTCTTCACTCTTATTCTTCTATTGGAATTC  1164