BAC Information

Click to search

BAC

Clone NameB6Ng01-190P03
Chromosome19 (Build37)
Map Location 24,498,677 - 24,578,578
singlet/doubletdoublet
Overlap genePip5k1b, 2900009I07Rik
Upstream geneMamdc2, 1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1, Apba1, Gm967, 1700021P04Rik, Tjp2, Fxn, LOC667743, LOC100042457
Downstream geneE030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1, Dock8, LOC100042503, Ankrd15, LOC433233, LOC383474
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190P03.bB6Ng01-190P03.g
ACCGA014571GA014572
length1,2111,108
definitionB6Ng01-190P03.b B6Ng01-190P03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,576,876 - 24,578,578)(24,498,677 - 24,499,781)
sequence
gaattccagacttagttttgttttttgagacaaggtcgcatgtagtttcc
aggctggtatctgaggctggccttgaactccaggtcctcctgccctcacc
tcccaagagcttgagtcagaggcctcccatcatgctcagcatgccaggtt
gtttttaaagaatagaacagaataggtttctgttcttattggtgataaaa
ctgtttgatattttctaaggtagaccaacctacttgctcatcttttctct
ccatatcttcataagctttcttgaagattagttttcaagaactttagagt
cattttgttagatcatgaaggaaacttcctgtgctctactaactacataa
tattttctatagctacataatatttttaaaatttgggaggagaaactctc
atgtttaacatttgtcatatcatttgatgaaaaccttacatcattttttc
ttttatacccttctgtaaaaacacatggctttatgccacttgtgtatgtt
tctgtttagcttcccactgcttgtgtagtatcttttattttgcttatgag
tatgaatttcagcccatcatataagttgcttggttatttctagaatgaag
ggaatttgatttttacctagtggccttgtccttgtaatagagtgatgcta
ttgcattctgtcaatgcgatatcatagtactcccacatgttaattttatc
tttcggtttctataattcacatttttactgccttacatcatacatgagtt
gtagctttcttctagaattttggcaatgacagtctttttttttttttctc
caaaaagatgcttttaggaacacactcatatgtgacctacttgatacact
gtggcgaatgacagttgccaggtgctcttacccaccagaaggtgtcccac
caacctactaaacagatctatttttaggggagagtctaactcatctccga
ctctttttgtgctggattttgaaagatctataaaaaaagaatttgtgttg
catcatagtcaagttagaaagtagaccagcgacccatggagtgtccagct
gagcttcctggtgtgaattatcagaccttggctgtgcagcgtaattgatg
cttgagcatacctggtactttaaactcgatgctttatttattgtggaccc
tactagaggttcttctaagaccgatttgtgtgaggtcctgatcccatttt
gggggatttaa
gaattccactgttccaagcaaagcagatgtcctgtgcaggcagagatgga
gacgtcaggaaaggttcttgaaacccaataggatttcctactaaatgtga
aagcagtcagagaactctatcctgttctggatgtgggtttttaaacaaat
gtcattaatgcaacaaaagacttcttttcgacagttttctagtgcttttt
gaaaataatctgcccccttcatactcaagaatacagattgccacagataa
aaaacagggtcttagtctgttcaggattccaaacttggagctaggatgga
gagggtggcagtcatctttgtgccacctcaaaggactgaattcacacctc
atcagtacccaacagtccctgctctcctcagatttaaattcccctgggca
caagtggggagtccattaagaacaatagcaattgaagatttgtagaagca
aatatcatccactcagtggtccttcctaccgtattagatttaagattcaa
gccgtactacagtagtgctatactcacgttaagtgtcctgcacaagactg
agctccgagaggttgcaaggatagacagaagagtgggcacaagggtaggt
gctctgcctctttcaccactgtctcagctttagaacaagctgcagattcg
cactctacccttcccatgcttctgagagtctacatctgcttttcaaactg
ttttactgttccttcgaatttgtcagacagcaaatatggataatccctga
ctgctcgttcgcttcacaagagtgtcaatcaaggtgctgcactgtcgaac
tgggatgctagccaatcccatgtcttgatttgcaacaacattgggggggg
ggggaagcctttgcttaggccaacatctaggaagaatggatcctttcaga
gacagagttagcatttgttgctaagttctcctgtgaggagtagctgatta
ttagcacttcatggacacagacaaaggacttagggatgacccatgaccag
catcactttccaacgcctatgagtgatccaggagagaggataacccaaat
caccaattaacagttgacctttgataagccatgcaagcccacacgtaggc
cttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_24576876_24578578
seq2: B6Ng01-190P03.b_42_1252 (reverse)

seq1  TTAAATTGTTAACATTGGTGTGTGTGTGTGTGCGCGTGCGCACGCGTATG  50
                                                        
seq2  --------------------------------------------------  0

seq1  CGCGCAAGCAGGTATGCGGGTTCCCACAGACGCCAGAGTGGGTGCCTGTG  100
                                                        
seq2  --------------------------------------------------  0

seq1  GAGAGGGAGGAAGGTGCCCACAGAAGCCAGAGGGAGCTGGAGTTGCTGGT  150
                                                        
seq2  --------------------------------------------------  0

seq1  AGCTGTGGGTTCTTCCTGTGGCGGAGCAGGAAGCACCCTCACAGCCGAGC  200
                                                        
seq2  --------------------------------------------------  0

seq1  CCTCCGTCCCTTTAGTCTGCAGAGTTCCCACATTTTGAGGGGGGTAAAAT  250
                                                        
seq2  --------------------------------------------------  0

seq1  CCTATGCTACTCATACAGCATAATTTAATTAAATCAGATTATTTTGTATG  300
                                                        
seq2  --------------------------------------------------  0

seq1  AGGGGGCCCAACAAATAAGAATAATGTATATATCTAAGAAAGGGCACGAA  350
                                                        
seq2  --------------------------------------------------  0

seq1  TATATTACAAATTAGCATCTCCAGCCCCACCCCCACCCCCACATCGGCAC  400
                                                        
seq2  --------------------------------------------------  0

seq1  CACATACATTTTTGTAAACGGCTGCTGATATCCTTATGCAATGGCTGACT  450
                                                        
seq2  --------------------------------------------------  0

seq1  CACGAACATACTTTGAAAACACCCATGCAGCTAA--CCCCCAAAATGGGA  498
                                     |||  ||||||||||||||
seq2  ------------------------------TTAAATCCCCCAAAATGGGA  20

seq1  TCAGCACCTCACACAAA-CGGTTCCTTAGAAAGGGCACCTCTAAAGTAGG  547
      |||| |||||||||||| ||||  |||||||   | ||||||  ||||||
seq2  TCAGGACCTCACACAAATCGGT--CTTAGAA---GAACCTCT--AGTAGG  63

seq1  --TCACAATTAAATAAAAGCCAATTCGAGTTTTAAAGTACAAGTGTATGC  595
         ||||| ||||| |||||    ||||| |||||||||| || ||||||
seq2  GTCCACAA-TAAAT-AAAGC---ATCGAG-TTTAAAGTACCAG-GTATGC  106

seq1  TTCAGGCATTCAATTACGCTGCACAGCCAAGGTCTTGATAATTTCACA-C  644
       ||| ||| ||||||||||||||||||||||||| |||||| |||||| |
seq2  -TCAAGCA-TCAATTACGCTGCACAGCCAAGGTC-TGATAA-TTCACACC  152

seq1  AGGAAGCTCAGGCTGGACACTCCATGGGTCGCTGGTCTACTTTTCTAACT  694
      |||||||||| ||||||||||||||||||||||||||||| |||||||||
seq2  AGGAAGCTCA-GCTGGACACTCCATGGGTCGCTGGTCTAC-TTTCTAACT  200

seq1  TGACTATGATGCACCACAAATTCCTTTTTTATAGATCTTTCAAAATCCAG  744
      ||||||||||||| ||||||||| ||||||||||||||||||||||||||
seq2  TGACTATGATGCAACACAAATTCTTTTTTTATAGATCTTTCAAAATCCAG  250

seq1  CACAAAAAGAGTCGGAGATGAGTTAGACTCT-CCCTAAAAATAGATCTGT  793
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CACAAAAAGAGTCGGAGATGAGTTAGACTCTCCCCTAAAAATAGATCTGT  300

seq1  TTAGTAGGTTGGTGGGACACCTTCTGGTGGGTAAGAGCACCTGGCAACTG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAGGTTGGTGGGACACCTTCTGGTGGGTAAGAGCACCTGGCAACTG  350

seq1  TCATTCGCCACAGTGTATCAAGTAGGTCACATATGAGTGTGTTCCTAAAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCGCCACAGTGTATCAAGTAGGTCACATATGAGTGTGTTCCTAAAA  400

seq1  GCATCTTTTTGGAG-AAAAAAAAAAAAGACTGTCATTGCCAAAATTCTAG  942
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCATCTTTTTGGAGAAAAAAAAAAAAAGACTGTCATTGCCAAAATTCTAG  450

seq1  AAGAAAGCTACAACTCATGTATGATGTAAGGCAGTAAAAATGTGAATTAT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGCTACAACTCATGTATGATGTAAGGCAGTAAAAATGTGAATTAT  500

seq1  AGAAACCGAAAGATAAAATTAACATGTGGGAGTACTATGATATCGCATTG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCGAAAGATAAAATTAACATGTGGGAGTACTATGATATCGCATTG  550

seq1  ACAGAATGCAATAGCATCACTCTATTACAAGGACAAGGCCACTAGGTAAA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATGCAATAGCATCACTCTATTACAAGGACAAGGCCACTAGGTAAA  600

seq1  AATCAAATTCCCTTCATTCTAGAAATAACCAAGCAACTTATATGATGGGC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAATTCCCTTCATTCTAGAAATAACCAAGCAACTTATATGATGGGC  650

seq1  TGAAATTCATACTCATAAGCAAAATAAAAGATACTACACAAGCAGTGGGA  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTCATACTCATAAGCAAAATAAAAGATACTACACAAGCAGTGGGA  700

seq1  AGCTAAACAGAAACATACACAAGTGGCATAAAGCCATGTGTTTTTACAGA  1242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAACAGAAACATACACAAGTGGCATAAAGCCATGTGTTTTTACAGA  750

seq1  AGGGTATAAAAGAAAAAATGATGTAAGGTTTTCATCAAATGATATGACAA  1292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTATAAAAGAAAAAATGATGTAAGGTTTTCATCAAATGATATGACAA  800

seq1  ATGTTAAACATGAGAGTTTCTCCTCCCAAATTTTAAAAATATTATGTAGC  1342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAAACATGAGAGTTTCTCCTCCCAAATTTTAAAAATATTATGTAGC  850

seq1  TATAGAAAATATTATGTAGTTAGTAGAGCACAGGAAGTTTCCTTCATGAT  1392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAAAATATTATGTAGTTAGTAGAGCACAGGAAGTTTCCTTCATGAT  900

seq1  CTAACAAAATGACTCTAAAGTTCTTGAAAACTAATCTTCAAGAAAGCTTA  1442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAAAATGACTCTAAAGTTCTTGAAAACTAATCTTCAAGAAAGCTTA  950

seq1  TGAAGATATGGAGAGAAAAGATGAGCAAGTAGGTTGGTCTACCTTAGAAA  1492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATATGGAGAGAAAAGATGAGCAAGTAGGTTGGTCTACCTTAGAAA  1000

seq1  ATATCAAACAGTTTTATCACCAATAAGAACAGAAACCTATTCTGTTCTAT  1542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAAACAGTTTTATCACCAATAAGAACAGAAACCTATTCTGTTCTAT  1050

seq1  TCTTTAAAAACAACCTGGCATGCTGAGCATGATGGGAGGCCTCTGACTCA  1592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAAAACAACCTGGCATGCTGAGCATGATGGGAGGCCTCTGACTCA  1100

seq1  AGCTCTTGGGAGGTGAGGGCAGGAGGACCTGGAGTTCAAGGCCAGCCTCA  1642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTGGGAGGTGAGGGCAGGAGGACCTGGAGTTCAAGGCCAGCCTCA  1150

seq1  GATACCAGCCTGGAAACTACATGCGACCTTGTCTCAAAAAACAAAACTAA  1692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCAGCCTGGAAACTACATGCGACCTTGTCTCAAAAAACAAAACTAA  1200

seq1  GTCTGGAATTC  1703
      |||||||||||
seq2  GTCTGGAATTC  1211

seq1: chr19_24498677_24499781
seq2: B6Ng01-190P03.g_65_1172

seq1  GAATTCCACTGTTCCAAGCAAAGCAGATGTCCTGTGCAGGCAGAGATGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTGTTCCAAGCAAAGCAGATGTCCTGTGCAGGCAGAGATGGA  50

seq1  GACGTCAGGAAAGGTTCTTGAAACCCAATAGGATTTCCTACTAAATGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTCAGGAAAGGTTCTTGAAACCCAATAGGATTTCCTACTAAATGTGA  100

seq1  AAGCAGTCAGAGAACTCTATCCTGTTCTGGATGTGGGTTTTTAAACAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTCAGAGAACTCTATCCTGTTCTGGATGTGGGTTTTTAAACAAAT  150

seq1  GTCATTAATGCAACAAAAGACTTCTTTTCGACAGTTTTCTAGTGCTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTAATGCAACAAAAGACTTCTTTTCGACAGTTTTCTAGTGCTTTTT  200

seq1  GAAAATAATCTGCCCCCTTCATACTCAAGAATACAGATTGCCACAGATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAATCTGCCCCCTTCATACTCAAGAATACAGATTGCCACAGATAA  250

seq1  AAAACAGGGTCTTAGTCTGTTCAGGATTCCAAACTTGGAGCTAGGATGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGGGTCTTAGTCTGTTCAGGATTCCAAACTTGGAGCTAGGATGGA  300

seq1  GAGGGTGGCAGTCATCTTTGTGCCACCTCAAAGGACTGAATTCACACCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGGCAGTCATCTTTGTGCCACCTCAAAGGACTGAATTCACACCTC  350

seq1  ATCAGTACCCAACAGTCCCTGCTCTCCTCAGATTTAAATTCCCCTGGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTACCCAACAGTCCCTGCTCTCCTCAGATTTAAATTCCCCTGGGCA  400

seq1  CAAGTGGGGAGTCCATTAAGAACAATAGCAATTGAAGATTTGTAGAAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGGGGAGTCCATTAAGAACAATAGCAATTGAAGATTTGTAGAAGCA  450

seq1  AATATCATCCACTCAGTGGTCCTTCCTACCGTATTAGATTTAAGATTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCATCCACTCAGTGGTCCTTCCTACCGTATTAGATTTAAGATTCAA  500

seq1  GCCGTACTACAGTAGTGCTATACTCACGTTAAGTGTCCTGCACAAGACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTACTACAGTAGTGCTATACTCACGTTAAGTGTCCTGCACAAGACTG  550

seq1  AGCTCCGAGAGGTTGCAAGGATAGACAGAAGAGTGGGCACAAGGGTAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCGAGAGGTTGCAAGGATAGACAGAAGAGTGGGCACAAGGGTAGGT  600

seq1  GCTCTGCCTCTTTCACCACTGTCTCAGCTTTAGAACAAGCTGCAGATTCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCCTCTTTCACCACTGTCTCAGCTTTAGAACAAGCTGCAGATTCG  650

seq1  CACTCTACCCTTCCCATGCTTCTGAGAGTCTACATCTGCTTTTCAAACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTACCCTTCCCATGCTTCTGAGAGTCTACATCTGCTTTTCAAACTG  700

seq1  TTTTACTGTTCCTTCGAATTTGTCAGACAGCAAATATGGATAATCCCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTGTTCCTTCGAATTTGTCAGACAGCAAATATGGATAATCCCTGA  750

seq1  CTGCTCGTTCGCTTCACAAGAGTGTCAATCAAGGTGCTGCACTGTCGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCGTTCGCTTCACAAGAGTGTCAATCAAGGTGCTGCACTGTCGAAC  800

seq1  TGGGATGCTAGCCAATCCCATGTCTTGATTTGCAACAACATT--GGGGGG  848
      ||||||||||||||||||||||||||||||||||||||||||  ||||||
seq2  TGGGATGCTAGCCAATCCCATGTCTTGATTTGCAACAACATTGGGGGGGG  850

seq1  GGGGAAGCCTTTGCTTAGGCCAACATCTAGGAAGAATGGATCC-TTCAGA  897
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGGGAAGCCTTTGCTTAGGCCAACATCTAGGAAGAATGGATCCTTTCAGA  900

seq1  GACAGAGTTAGCATTTGTTGCTAAGTTCTCCTGTGAGGAGTAGCTGATTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGTTAGCATTTGTTGCTAAGTTCTCCTGTGAGGAGTAGCTGATTA  950

seq1  TTAGCACTTCATGGACAACAGACAAAAGGACTTAGGGATGACACATGACC  997
      |||||||||||||||| |||||| |||||||||||||||||| |||||||
seq2  TTAGCACTTCATGGAC-ACAGAC-AAAGGACTTAGGGATGACCCATGACC  998

seq1  AGCATCAACTTTCAAACGCCTATGAAGTGATCCAGGAGAGA-GATAACCC  1046
      |||||| |||||| |||||||||| |||||||||||||||| ||||||||
seq2  AGCATC-ACTTTCCAACGCCTATG-AGTGATCCAGGAGAGAGGATAACCC  1046

seq1  AAATCACCA--TTACAGTTGA-CTTTGATAAAGCCATGGAAG-CCACACT  1092
      |||||||||  | |||||||| ||||||| |||||||| ||| |||||| 
seq2  AAATCACCAATTAACAGTTGACCTTTGAT-AAGCCATGCAAGCCCACACG  1095

seq1  TAGCCCTTTTTTT  1105
      ||| |||||||||
seq2  TAGGCCTTTTTTT  1108