BAC Information

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BAC

Clone NameB6Ng01-197E20
Chromosome19 (Build37)
Map Location 20,480,889 - 20,482,042
singlet/doubletsinglet
Overlap gene1500015L24Rik
Upstream geneLOC100042218, LOC100041541, Anxa1, LOC100041560
Downstream geneE030003E18Rik, EG626549, Aldh1a1, Aldh1a7, Tmc1, LOC100042287, LOC100042294, LOC100041602, LOC100041613, Zfand5, Gda
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197E20.bB6Ng01-197E20.g
ACCGA019203GA019204
length9921,153
definitionB6Ng01-197E20.b B6Ng01-197E20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgcactaaatccatctggccctgtttttgttgttgttgttgttg
tttgttttgtttgttttaaatggattcttctatttacttgtgtgctatgg
gcctgtttagatagtttacttgatcttgatttaactttggtatgtggcat
ctgtctagaaaaccatccatttcatctagattttccagttttgttgagta
tcagcttttatagtaggatctgatgtttgtttgtttttttaaatttcctc
tgtttctgttgttatgtctcccttttcatttctgattttattaatttgga
tactgccccttggccctttagttagtgtggctaggggtttatctatcttg
ttgattctttcaaagtatcagctttcggttttgctgattcttttcattat
tttatttgtttctatttggttgatttctacactgagtttgactatttcct
gcattctactcttccttggtgagtttgcttctttgtgttctatagctctc
aggtgtgttgttaagttgtttgtgtaagatctctccagtttctttaccag
ggcacttagtactatggattttcctcttagcactgctttcattgtgtccc
ataagtttgggtatgatgtgtcaactttttcattaaattccaggtagtct
ttaatttctttcttccttgatcaaattatcactgagaaaagattttttca
gtttccatgcgtatgtgggctttctatagtttttgctgttattgaagacc
agccttaggccatggtgatctaataggatgcatggtattatttcaatctt
cttgtatctgtttgagggttgttttgggaccaatttatatggtcaaattt
tggaaaaggtaccatgaggtgctgagaagaaggtgtattctttgtttagg
gtaaaatgttctgtaaatatctgttaatccatttgggttaataaaccttc
actgtatcttgttagtttctgtttacatgatctgtccatttg

gaattcttaatacggcctcagtactaagttactatgctatttttcttgat
attaaaaaaatacccagggactttctaaatttctataaattaataaaata
gtaattctaatcagtattgtcattaattatttaatatatatttcaagcac
agtgtggcttggtgtttatttaggagtttattgcatttggtcctgttcta
aaacatgagatttaagtcaaccataatgtctttctctacatcgctttaac
tcatgcttcagtatttttctgaatagtctgttctaaagatgagataatgg
catttctattacatttgttcctagcatcagtgattacatatcactgttct
ctggaattcattaactagttggacacacacacacacacacacaccgattt
gcgaatacagtcagtgaatttattattaaagcatttatgcagaattggtg
acttcaacaaacacaaccaaagaaatagtgaattatgatattttacctaa
cagctctatggtaaaaggaattaaacagcttcagaaattaatttgaaata
taagaaaagttgtattttaaaacgacagagtgcaagaacattctcgacag
agacgctttccccaaatggacaaaaaagtaggtgtacttgaggcctgtgc
attccttgtattgtttcattgtcagaacacagaaaagaacacactgttgc
tatgtcatcattgctaatgctttgtttcagctgtcaggcatgaaaaatca
cagagaggtggaaaagttttcaaaagaaaagagagaaacgtttgaaaatc
atgaacacgctgtgaatggttaacccagaagagctggtttgtccagaact
gtaaagaaaactgagtgccttagaagcacactgctaagattttccatacc
gtcctaaagagggaatcaaagtgcatgcctggtggtttcatgtactgtaa
gaatgtgtttgtaggtacaggagtgtccatgagctatttcccaggtagct
gtgtttatgttcatagtcacctaaagccttcttacctgggtctaggtttt
ttgtttatacaagctcttttcacccatgatgttgtacattgagtatcctc
agtccaggttgcaccacgtaaagaatgctgaaccttcaaagtagactgga
tgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_20480889_20482042
seq2: B6Ng01-197E20.g_63_1215 (reverse)

seq1  GCATCCAGTTCTACTTTTGAGG-TCAGCATTCTTTACCGTGTTGCCAACC  49
      |||||||| ||||||||  ||| ||||||||||||| |||| || |||||
seq2  GCATCCAG-TCTACTTTGAAGGTTCAGCATTCTTTA-CGTGGTG-CAACC  47

seq1  TGAACTGA-GATACTCAAATGTACAACATCAT-GGTGAAAAGAGCTTTGT  97
      || ||||| ||||||| ||||||||||||||| |||||||||||| ||||
seq2  TGGACTGAGGATACTC-AATGTACAACATCATGGGTGAAAAGAGC-TTGT  95

seq1  ATAAAACAAAAAACCTAGACCCAGGTAAGAAGGCTTTA-GTGACTATGAA  146
      || ||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AT-AAACAAAAAACCTAGACCCAGGTAAGAAGGCTTTAGGTGACTATGAA  144

seq1  CATAAACACAGCTACCTGGGAAATAGCTCATGGACACTCCTGTACCTACA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACACAGCTACCTGGGAAATAGCTCATGGACACTCCTGTACCTACA  194

seq1  AACACATTCTTACAGTACATGAAACCA-CAGGCATGCACTTTGATCCCCT  245
      ||||||||||||||||||||||||||| ||||||||||||||||| ||||
seq2  AACACATTCTTACAGTACATGAAACCACCAGGCATGCACTTTGATTCCCT  244

seq1  CTTTAGGACGGTATGGAAAATCTTAGCAGTGTGCTTCTAAGGCACTCAGT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGACGGTATGGAAAATCTTAGCAGTGTGCTTCTAAGGCACTCAGT  294

seq1  TTTCTTTACAGTTCTGGACAAACCAGCTCTTCTGGGTTAACCATTCACAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTACAGTTCTGGACAAACCAGCTCTTCTGGGTTAACCATTCACAG  344

seq1  CGTGTTCATGATTTTCAAACGTTTCTCTCTTTTCTTTTGAAAACTTTTCC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTTCATGATTTTCAAACGTTTCTCTCTTTTCTTTTGAAAACTTTTCC  394

seq1  ACCTCTCTGTGATTTTTCATGCCTGACAGCTGAAACAAAGCATTAGCAAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCTGTGATTTTTCATGCCTGACAGCTGAAACAAAGCATTAGCAAT  444

seq1  GATGACATAGCAACAGTGTGTTCTTTTCTGTGTTCTGACAATGAAACAAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACATAGCAACAGTGTGTTCTTTTCTGTGTTCTGACAATGAAACAAT  494

seq1  ACAAGGAATGCACAGGCCTCAAGTACACCTACTTTTTTGTCCATTTGGGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGAATGCACAGGCCTCAAGTACACCTACTTTTTTGTCCATTTGGGG  544

seq1  AAAGCGTCTCTGTCGAGAATGTTCTTGCACTCTGTCGTTTTAAAATACAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCGTCTCTGTCGAGAATGTTCTTGCACTCTGTCGTTTTAAAATACAA  594

seq1  CTTTTCTTATATTTCAAATTAATTTCTGAAGCTGTTTAATTCCTTTTACC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTATATTTCAAATTAATTTCTGAAGCTGTTTAATTCCTTTTACC  644

seq1  ATAGAGCTGTTAGGTAAAATATCATAATTCACTATTTCTTTGGTTGTGTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGCTGTTAGGTAAAATATCATAATTCACTATTTCTTTGGTTGTGTT  694

seq1  TGTTGAAGTCACCAATTCTGCATAAATGCTTTAATAATAAATTCACTGAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAAGTCACCAATTCTGCATAAATGCTTTAATAATAAATTCACTGAC  744

seq1  TGTATTCGCAAATCGGTGTGTGTGTGTGTGTGTGTGTCCAACTAGTTAAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCGCAAATCGGTGTGTGTGTGTGTGTGTGTGTCCAACTAGTTAAT  794

seq1  GAATTCCAGAGAACAGTGATATGTAATCACTGATGCTAGGAACAAATGTA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGAACAGTGATATGTAATCACTGATGCTAGGAACAAATGTA  844

seq1  ATAGAAATGCCATTATCTCATCTTTAGAACAGACTATTCAGAAAAATACT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAATGCCATTATCTCATCTTTAGAACAGACTATTCAGAAAAATACT  894

seq1  GAAGCATGAGTTAAAGCGATGTAGAGAAAGACATTATGGTTGACTTAAAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATGAGTTAAAGCGATGTAGAGAAAGACATTATGGTTGACTTAAAT  944

seq1  CTCATGTTTTAGAACAGGACCAAATGCAATAAACTCCTAAATAAACACCA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTTTTAGAACAGGACCAAATGCAATAAACTCCTAAATAAACACCA  994

seq1  AGCCACACTGTGCTTGAAATATATATTAAATAATTAATGACAATACTGAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACACTGTGCTTGAAATATATATTAAATAATTAATGACAATACTGAT  1044

seq1  TAGAATTACTATTTTATTAATTTATAGAAATTTAGAAAGTCCCTGGGTAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTACTATTTTATTAATTTATAGAAATTTAGAAAGTCCCTGGGTAT  1094

seq1  TTTTTTAATATCAAGAAAAATAGCATAGTAACTTAGTACTGAGGCCGTAT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAATATCAAGAAAAATAGCATAGTAACTTAGTACTGAGGCCGTAT  1144

seq1  TAAGAATTC  1154
      |||||||||
seq2  TAAGAATTC  1153


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