BAC Information

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BAC

Clone NameB6Ng01-199L13
Chromosome19 (Build37)
Map Location 20,171,579 - 20,172,627
singlet/doubletsinglet
Overlap genenone
Upstream geneRorb, LOC100042218
Downstream geneLOC100041541, Anxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549, Aldh1a1, Aldh1a7, Tmc1, LOC100042287
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199L13.bB6Ng01-199L13.g
ACCGA020981GA020982
length8651,063
definitionB6Ng01-199L13.b B6Ng01-199L13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactaacctcacatctgatagagggctaatatccaaaatatataa
agaatttaagaaattaatcaccaaaaaccccaaacaacccatgaaaaaac
gaggtgtagaaataaaccaagaattcacaactgaggaatcttgaatggct
gagaagcacctaaataaatgttctaagtccttagtgaccagagaaatgca
aaccaaaaggaccctgtgattctaccttataccagtcagaatggctatga
tcaaaacctctgttgacaacaaatgttggagagattgtggaaaaagagaa
acagtcttccattgctggtgggactgcaagctggtacaattactctggaa
atcaatctagaggtttctcagaaaattttaaatagatctacctggagacc
cagctataccacttttgggaatataaccaaaagatgctccaccatgccac
aggggcacttgttcactatgttcatagtggccttatttgtgatagccaga
agctggaaacaacctaaatgtcccatggcagaagaatggatacagaaaat
gtggttcatttacacaatggaatagtattgagctattaagaacgagaaca
ttcatcttatagatgactgtgtgagcccaatggagagggtagagaaagcg
cccaagaagttgaaggggtcggcaaccctataggtggaacaacaatatga
actaaccagtacccccagagctcatatctctagatatatatgtagcagaa
gatggcctaatcagccatcactgggaagagaggccccttggtattacaaa
ctttaaatgccccagtacaggggaacaccagggccaagaagcaggagtgg
gtgggtaggggatca

gaattcagatttctctcttttcttttcccacactactgaattaccttttg
cttttctaaatttctcctctccactttttttgtttgtttgttttttaatt
tcctgcatggaaaacttcatttgttttactgaaatgtgtgattgatgtct
tagtttgctttatattgttatgaaaaacaccatgaccaaaagcaacttgg
gaaagaaagggtttataacaccttacatttgtgtcacacattccatcatt
aaggaaagtccggccagcacttaagcagggcaggaacccagaggaaggaa
ctgaaacagaaaatatggatgaatgctctttattgacttgctccccatga
cttagcctgcttttttttttaatacatcatgagccaatttgtctaagggg
aacaccatttacagcagactgaggcctcccacatcaatcattattcaaaa
aaaaaaaaaaaatccacaggcttacacataggttaatcttgtgccgttga
ggctccctttacctaaatgatctttgcagtgtccagctgacaaaacctaa
ccaggatgactaaaatcacaaatcctagctttcttcctcttgccttacta
agtcctacaaataatgatcgtgcgtaagatttatcaattgtttgatgatg
taattccttttggctcatactgtttattacggatctctcttgctgtgaga
taataaggctttttgaagatacattcctgactgccatggcacatgtttgt
tgaaggtttttaatgaaaaatatttcctccctctccagggtagttgctag
agagctggcccatgtggtacaaggctttgtgtggggggggatcctgtcct
tgcccttaggcattgggccagtgtggggtgcaggagagctagtgggatga
ccaacttcagcaccacaccagggctttgagtagacccaccccagtatcta
cctccatccatggaactgctggagcatgtgaagagttggccctgcaatac
cgagtgccttcaggatttcaatgacacaggccaccacatgagctggaaag
tgagttccagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_20171579_20172627
seq2: B6Ng01-199L13.g_66_1128

seq1  GAATTCAGATTTCTCTCTTTTCTTTTCCCACACTACTGAATTACCTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATTTCTCTCTTTTCTTTTCCCACACTACTGAATTACCTTTTG  50

seq1  CTTTTCTAAATTTCTCCTCTCCACTTTTTTTGTTTGTTTGTTTTTTAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTAAATTTCTCCTCTCCACTTTTTTTGTTTGTTTGTTTTTTAATT  100

seq1  TCCTGCATGGAAAACTTCATTTGTTTTACTGAAATGTGTGATTGATGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCATGGAAAACTTCATTTGTTTTACTGAAATGTGTGATTGATGTCT  150

seq1  TAGTTTGCTTTATATTGTTATGAAAAACACCATGACCAAAAGCAACTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGCTTTATATTGTTATGAAAAACACCATGACCAAAAGCAACTTGG  200

seq1  GAAAGAAAGGGTTTATAACACCTTACATTTGTGTCACACATTCCATCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGGGTTTATAACACCTTACATTTGTGTCACACATTCCATCATT  250

seq1  AAGGAAAGTCCGGCCAGCACTTAAGCAGGGCAGGAACCCAGAGGAAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAGTCCGGCCAGCACTTAAGCAGGGCAGGAACCCAGAGGAAGGAA  300

seq1  CTGAAACAGAAAATATGGATGAATGCTCTTTATTGACTTGCTCCCCATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACAGAAAATATGGATGAATGCTCTTTATTGACTTGCTCCCCATGA  350

seq1  CTTAGCCTGCTTTTTTTTTTAATACATCATGAGCCAATTTGTCTAAGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCCTGCTTTTTTTTTTAATACATCATGAGCCAATTTGTCTAAGGGG  400

seq1  AACACCATTTACAGCAGACTGAGGCCTCCCACATCAATCATTATTCAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCATTTACAGCAGACTGAGGCCTCCCACATCAATCATTATTCAAAA  450

seq1  AAAAAAAAAAAATCCACAGGCTTACACATAGGTTAATCTTGTGCCGTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAATCCACAGGCTTACACATAGGTTAATCTTGTGCCGTTGA  500

seq1  GGCTCCCTTTACCTAAATGATCTTTGCAGTGTCCAGCTGACAAAACCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCCTTTACCTAAATGATCTTTGCAGTGTCCAGCTGACAAAACCTAA  550

seq1  CCAGGATGACTAAAATCACAAATCCTAGCTTTCTTCCTCTTGCCTTACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGATGACTAAAATCACAAATCCTAGCTTTCTTCCTCTTGCCTTACTA  600

seq1  AGTCCTACAAATAATGATCGTGCGTAAGATTTATCAATTGTTTGATGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTACAAATAATGATCGTGCGTAAGATTTATCAATTGTTTGATGATG  650

seq1  TAATTCCTTTTGGCTCATACTGTTTATTACGGATCTCTCTTGCTGTGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCTTTTGGCTCATACTGTTTATTACGGATCTCTCTTGCTGTGAGA  700

seq1  TAATAAGGC-TTTTGAAGATACATTCCTGACTGCCATGGCACATGTTTGT  749
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGGCTTTTTGAAGATACATTCCTGACTGCCATGGCACATGTTTGT  750

seq1  TGAAGGTTTTTAATG-AAAATA-TTCCT-CCTCTCCAGGGTAG-TGCTAG  795
      ||||||||||||||| |||||| ||||| |||||||||||||| ||||||
seq2  TGAAGGTTTTTAATGAAAAATATTTCCTCCCTCTCCAGGGTAGTTGCTAG  800

seq1  AGAGCTGGCCCATGTGGTACAAGGC-TTGTGT-GGGGGGGATCCTGTCC-  842
      ||||||||||||||||||||||||| |||||| |||||||||||||||| 
seq2  AGAGCTGGCCCATGTGGTACAAGGCTTTGTGTGGGGGGGGATCCTGTCCT  850

seq1  TGCCCTTAGGCATT-GGCCAGTGT-GGGTGCAGGAGAGCTAGTGGGATGA  890
      |||||||||||||| ||||||||| |||||||||||||||||||||||||
seq2  TGCCCTTAGGCATTGGGCCAGTGTGGGGTGCAGGAGAGCTAGTGGGATGA  900

seq1  CCAAC-TCAGCAACCACA-CAGGGCTTTGAGTAGACCCACCCCAGTATCT  938
      ||||| ||||| |||||| |||||||||||||||||||||||||||||||
seq2  CCAACTTCAGC-ACCACACCAGGGCTTTGAGTAGACCCACCCCAGTATCT  949

seq1  ACC-CCATCAAT-GAACTGCTGGAGCATGTGAAGAGGTTGGCCCTGC-AG  985
      ||| ||||| || |||||||||||||||||||||| ||||||||||| | 
seq2  ACCTCCATCCATGGAACTGCTGGAGCATGTGAAGA-GTTGGCCCTGCAAT  998

seq1  AACGAGTG-CTGCAGGATTTCAATGACACAGGCCAACAACATGAGGCTGG  1034
      | |||||| || |||||||||||||||||||||| || |||||| |||||
seq2  ACCGAGTGCCTTCAGGATTTCAATGACACAGGCC-ACCACATGA-GCTGG  1046

seq1  AGAG-GAG-TCCAGGGG  1049
      | || ||| ||||||||
seq2  AAAGTGAGTTCCAGGGG  1063


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