BAC Information

Click to search

BAC

Clone NameB6Ng01-199O11
Chromosome19 (Build37)4 (Build37)
Map Location 10,876,479 - 10,876,888131,691,954 - 131,692,416
singlet/doubletsingletsinglet
Overlap geneCd6
Upstream gene6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5
Downstream geneSlc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199O11.bB6Ng01-199O11.g
ACCGA021113GA021114
length729458
definitionB6Ng01-199O11.b B6Ng01-199O11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(10,876,479 - 10,876,888)(131,691,954 - 131,692,416)
sequence
gaattctagtggaagttttagagcttcccagcccttagtaacacatggtg
cttctcccagctcccaactcaagctcagtgcctagagttgactttcaggg
ttggctgagtgagcagcagatttgttaggcagcatggaggtgtcaccagg
gtgtctgccgggagtaccattgcatgatggacctcgggattctgcgctgc
ctggaacctgaccatccttaaggcaacccgcatctgtctatgagaatggt
gttcaaggcgtagaacatattcctttcatctcagtactgaggaggcagag
ataggtggatcagcctgatctacatagtaagtttcaggttagccagagct
atgctactcagtaagatgatatcaaaacaagcaagcaaacaaacaaaaga
ggagacagggaggggcctggagagatggctcagcagttctgagcccttgt
gaatagtgtagagtagtaattcaatgctttgcatccacagtgagttacaa
ccacccatcacttcagtctagcctccaaggacaccaggcttgtatatggc
acacatatacagctagcaaaacattcatataagaagtggctcgggctggt
gagatggctcagtgggtaagagcacccgactgctcttccaaaggtccaga
gttcaaatcccagcaaccacatggtggctcacaccatctgtaaatgagat
cttcccccctccttctgggggtgtctgaa
atgtgcaccatggtttgtgcagcagcccacaaaagtctgagagggagtca
gatcccttggaactgaagttacagaaagttatgagtccccatgtgggcac
ttggaacagaacctgagtcttctacaagagcagtaagcacccctaaacac
agggccatctctccaatctctaaataaatgcaattcttaaattttttaaa
ttaataagtgttcagccgcagccctccatgtttcaacttgcatttggtaa
cagtgtttctcctgaataggaaggagacccaggcttcctttgctgtggtt
cctttgggttctattgtgggacagggtcccactctgcagtcctggctggc
ctggaactcacagaaatctgcctgtctctgcctcccaaattctgagttca
agaggtatgagtgcagctgaggtttttgttgtttttaagatatatatata
tggcggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_10876479_10876888
seq2: B6Ng01-199O11.b_419_774

seq1  AAAACAAGCAAGCAAACAAACATTTGCCTTCCCCATGAATCTGCTTTGTG  50
      ||||||||||||||||||||||                            
seq2  AAAACAAGCAAGCAAACAAACA----------------------------  22

seq1  ATATTAAGATGCCTGGACCTAAAGAGAAAGCAGTG-CTGGATGGGAGAGA  99
                          |||||| |  ||| |   ||   |||||||
seq2  --------------------AAAGAGGAGACAGGGAGGGGCCTGGAGAGA  52

seq1  CGGCTCAGCAGGTAGAGGCACTTGCTGCCAAGTCTGATGACCTGAGATCA  149
       |||||||||| |    || |||| ||   ||| |   |   | |  |||
seq2  TGGCTCAGCAGTTCTGAGCCCTTG-TGAATAGTGTAGAGTAGT-AATTCA  100

seq1  GTCCCCAGGACTCACAGGGTGGAAAGAGAGAACTGACC-TCAATGGGTTG  198
       | |   | |  ||||| |     ||  | |||   || |||      | 
seq2  ATGCTTTGCATCCACAGTG-----AGTTACAACCACCCATCA-----CTT  140

seq1  CCCTCT-GACTTCACGCACAC--GTCGTGGAACAAACACACGCAAACAAA  245
      |  ||| | || || | ||||  | | || |     |||||  | |||  
seq2  CAGTCTAGCCTCCAAGGACACCAGGCTTGTATATGGCACACATATACAGC  190

seq1  TAAATATAATTTGCTAAAAAGAAAACAATGGGGCTGGTGAGATGGCTCAG  295
      | |  | ||  | |  | |||||     | ||||||||||||||||||||
seq2  T-AGCAAAACATTCATATAAGAAGTGGCTCGGGCTGGTGAGATGGCTCAG  239

seq1  TGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCGAAGTTCAAATCCCA  345
      ||||||||||||||||||||||||||| |||||||  |||||||||||||
seq2  TGGGTAAGAGCACCCGACTGCTCTTCCAAAGGTCCAGAGTTCAAATCCCA  289

seq1  GCAACCACATGGTGGCTCACAACCATCTGT-AATGAGATCTGACTCCCT-  393
      |||||||||||||||||||| ||||||||| ||||||||||  | |||| 
seq2  GCAACCACATGGTGGCTCAC-ACCATCTGTAAATGAGATCTTCCCCCCTC  338

seq1  CTTCT-GGAGTGTCTGAA  410
      ||||| || |||||||||
seq2  CTTCTGGGGGTGTCTGAA  356

seq1: chr4_131691954_131692416
seq2: B6Ng01-199O11.g_66_529

seq1  GAATTCATGTGCACCATGG-GTGTGCAGCAGCCCACAAAAGTCTGAGAGG  49
      |||||||||||||||||||  |||||||||||||||||||||||||||||
seq2  GAATTCATGTGCACCATGGTTTGTGCAGCAGCCCACAAAAGTCTGAGAGG  50

seq1  GAGTCAGATCCCTTGGAACTGAAGTTACAGAAAGTTATGAGTCCCCATGT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGATCCCTTGGAACTGAAGTTACAGAAAGTTATGAGTCCCCATGT  100

seq1  GGGCACTTGGAACAGAACCTGAGTCTTCTACAAGAGCAGTAAGCACCCCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACTTGGAACAGAACCTGAGTCTTCTACAAGAGCAGTAAGCACCCCT  150

seq1  AAACACAGGGCCATCTCTCCAATCTCTAAATAAATGCAATTCTTAAATTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAGGGCCATCTCTCCAATCTCTAAATAAATGCAATTCTTAAATTT  200

seq1  TTTAAATTAATAAGTGTTCAGCCGCAGCCCTCCATGTTTCAACTTGCATT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTAATAAGTGTTCAGCCGCAGCCCTCCATGTTTCAACTTGCATT  250

seq1  TGGTAACAGTGTTTCTCCTGAATAGGAAGGAGACCCAGGCTTCCTTTGCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAACAGTGTTTCTCCTGAATAGGAAGGAGACCCAGGCTTCCTTTGCT  300

seq1  GTGGTTCCTTTGGGTTCTATTGTGGGACAGGGTCCCACTCTGCAGTCCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTCCTTTGGGTTCTATTGTGGGACAGGGTCCCACTCTGCAGTCCTG  350

seq1  GCTGGCCTGGAACTCACAGAAATCTGCCTGTCTCTGCCTCCCAAATTCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCTGGAACTCACAGAAATCTGCCTGTCTCTGCCTCCCAAATTCTG  400

seq1  AGTTCAAGAGGTATGAGTGCAGCTGAGGTTTTTGTTGTTTTTAAGATATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAGAGGTATGAGTGCAGCTGAGGTTTTTGTTGTTTTTAAGATATA  450

seq1  TATATATGGCGGGA  463
      ||||||||||||||
seq2  TATATATGGCGGGA  464