BAC Information

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BAC

Clone NameB6Ng01-204D22
Chromosome19 (Build37)
Map Location 52,952,231 - 52,953,333
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042936, Ins1
Downstream geneLOC100043450, Xpnpep1, LOC668545, LOC674277, Add3, 1700001K23Rik, Mxi1, Smndc1, Dusp5, LOC100043462, Smc3, Rbm20, LOC100042979
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204D22.bB6Ng01-204D22.g
ACCGA024244GA024245
length1,1061,175
definitionB6Ng01-204D22.b B6Ng01-204D22.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctatttatatgttcctgagaggccgagctaccaatcattacatg
tctttggttggaatctacaaaaacccaaattattgaccttacctaacaac
ctgtcttagatggccgtgagtttcctggggtcagagggtgaaacagatga
agaagagcgatgcctaccattgctcttccaggatggcatgctgacaagtg
tcactgtcatttactgctgcttctagagcaatcatttcatcagggtctag
tgaattttaccacagtctctacttttttgcccatagtgtgaagagtatat
atacctgctaaattattgttataagaactttcttagtaaagatttaatat
cctgtatggtactgttaaacatatgtagatctccaagaagtattcttgca
tagtcacaattgatatacattgataaatgcttccctgttgcttctttccc
aagccctagcaaccactgttctactctgtttccatgaggttgactatttc
aggtttatcatgtaaatccccagtggatttcatcctcttgggagttaaac
caggccctgttgcttactcttatcccaagtttcctgcagggagtctgaga
cagaagaatcctcagtgaagaattgttgaataattgaatggacaaatgga
ccactttaaaaatagtcaaacagaagaatatattggtcagggggtcaggg
cgttctcctcagttctaaggccagaggcagagtccagtcacctccctggc
tcaacctgtctggagacactggatgtggtatgtctataaaggtatactgc
tgctgttagaagacagacccattaccaaagaccctcccccacctcattct
cgtcatccagacaacccgcttctgaggtagtggactgggcactatttaaa
gaagcttctttcagcccgggcagagatgaagctcagatggggctgcatac
ggttaggagtcaggctagtctctgccacatcgtgaaactgcaaagctggt
tctcagctgccatttcctcaacccagcagctcaaggatgcgtgaagtggt
aagtcttcagttattcatatttcagtcaaatctcttgcccacactttcat
gctcct
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggtggttcctca
ggaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggtccatgtagagacttccatatccagggatccaccccataatc
agcatccaaatgctgacaccattgcatacactagcaagatttttatcgaa
aggacccagatgtagctgtctcttgagagactatgccgggtcctagcaaa
cacagaagtggatgctcacagtcagctaatggatggatccacagggctct
caatggaggagctagagaaagtagctcaagaagctaaagggatcttgcaa
cctatagcggacacattatgaacttagcagtaccccggagctcttgactc
tagctgcatatgtatcaaagatggtcctagtcggcaatcactgaaagaga
aggctcatttggacaccgctaacttaattggcctcaagtacaaggtacct
gctcaggacccaaaaaatgaggtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_52952231_52953333
seq2: B6Ng01-204D22.b_50_1155 (reverse)

seq1  AGGAGCCATGAAAGTGTGGGCAAGAGA-TTGACTGAAATATGATAAACTG  49
      ||||| ||||||||||||||||||||| |||||||||||||||  |||||
seq2  AGGAG-CATGAAAGTGTGGGCAAGAGATTTGACTGAAATATGAATAACTG  49

seq1  GAGACTTACCACTTCACGCATCCTTGAGCTGCT-GGTTGAAGGAATGGCA  98
       |||||||||||||||||||||||||||||||| |||||| | |||||||
seq2  AAGACTTACCACTTCACGCATCCTTGAGCTGCTGGGTTGAGGAAATGGCA  99

seq1  GCTGAAGACCAGCTTTGCAGTTTCACGATGTGGCAGAGACTAGCCTGACT  148
      |||||  |||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAACCAGCTTTGCAGTTTCACGATGTGGCAGAGACTAGCCTGACT  149

seq1  CCTAACCGTATGCAGCCCCATCTGAGCTTCATCTCTGCCC-GGCTGGAAG  197
      |||||||||||||||||||||||||||||||||||||||| ||||| |||
seq2  CCTAACCGTATGCAGCCCCATCTGAGCTTCATCTCTGCCCGGGCTGAAAG  199

seq1  -AGCTTCTTTAAATAGTGCCCAGTCCACTACCTCAGAAGCGGGTTGTCTG  246
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCTTTAAATAGTGCCCAGTCCACTACCTCAGAAGCGGGTTGTCTG  249

seq1  GATGACGAGAATGAGGTGGGGGAGGGTCTTTGGTAATGGGTCTGTCTTCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACGAGAATGAGGTGGGGGAGGGTCTTTGGTAATGGGTCTGTCTTCT  299

seq1  AACAGCAGCAGTATACCTTTATAGACATACCACATCCAGTGTCTCCAGAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAGCAGTATACCTTTATAGACATACCACATCCAGTGTCTCCAGAC  349

seq1  AGGTTGAGCCAGGGAGGTGACTGGACTCTGCCTCTGGCCTTAGAACTGAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGAGCCAGGGAGGTGACTGGACTCTGCCTCTGGCCTTAGAACTGAG  399

seq1  GAGAACGCCCTGACCCCCTGACCAATATATTCTTCTGTTTGACTATTTTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACGCCCTGACCCCCTGACCAATATATTCTTCTGTTTGACTATTTTT  449

seq1  AAAGTGGTCCATTTGTCCATTCAATTATTCAACAATTCTTCACTGAGGAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGTCCATTTGTCCATTCAATTATTCAACAATTCTTCACTGAGGAT  499

seq1  TCTTCTGTCTCAGACTCCCTGCAGGAAACTTGGGATAAGAGTAAGCAACA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGTCTCAGACTCCCTGCAGGAAACTTGGGATAAGAGTAAGCAACA  549

seq1  GGGCCTGGTTTAACTCCCAAGAGGATGAAATCCACTGGGGATTTACATGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTGGTTTAACTCCCAAGAGGATGAAATCCACTGGGGATTTACATGA  599

seq1  TAAACCTGAAATAGTCAACCTCATGGAAACAGAGTAGAACAGTGGTTGCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCTGAAATAGTCAACCTCATGGAAACAGAGTAGAACAGTGGTTGCT  649

seq1  AGGGCTTGGGAAAGAAGCAACAGGGAAGCATTTATCAATGTATATCAATT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTGGGAAAGAAGCAACAGGGAAGCATTTATCAATGTATATCAATT  699

seq1  GTGACTATGCAAGAATACTTCTTGGAGATCTACATATGTTTAACAGTACC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTATGCAAGAATACTTCTTGGAGATCTACATATGTTTAACAGTACC  749

seq1  ATACAGGATATTAAATCTTTACTAAGAAAGTTCTTATAACAATAATTTAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGGATATTAAATCTTTACTAAGAAAGTTCTTATAACAATAATTTAG  799

seq1  CAGGTATATATACTCTTCACACTATGGGCAAAAAAGTAGAGACTGTGGTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTATATATACTCTTCACACTATGGGCAAAAAAGTAGAGACTGTGGTA  849

seq1  AAATTCACTAGACCCTGATGAAATGATTGCTCTAGAAGCAGCAGTAAATG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCACTAGACCCTGATGAAATGATTGCTCTAGAAGCAGCAGTAAATG  899

seq1  ACAGTGACACTTGTCAGCATGCCATCCTGGAAGAGCAATGGTAGGCATCG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGACACTTGTCAGCATGCCATCCTGGAAGAGCAATGGTAGGCATCG  949

seq1  CTCTTCTTCATCTGTTTCACCCTCTGACCCCAGGAAACTCACGGCCATCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTTCATCTGTTTCACCCTCTGACCCCAGGAAACTCACGGCCATCT  999

seq1  AAGACAGGTTGTTAGGTAAGGTCAATAATTTGGGTTTTTGTAGATTCCAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGGTTGTTAGGTAAGGTCAATAATTTGGGTTTTTGTAGATTCCAA  1049

seq1  CCAAAGACATGTAATGATTGGTAGCTCGGCCTCTCAGGAACATATAAATA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGACATGTAATGATTGGTAGCTCGGCCTCTCAGGAACATATAAATA  1099

seq1  GGAATTC  1103
      |||||||
seq2  GGAATTC  1106