BAC Information

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BAC

Clone NameB6Ng01-205H07
Chromosome19 (Build37)
Map Location 18,204,082 - 18,205,223
singlet/doubletsinglet
Overlap genenone
Upstream geneA230083H22Rik, Gcnt1, Rfk, Pcsk5, Eef1a1-ps1
Downstream geneLOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6, Rorb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205H07.bB6Ng01-205H07.g
ACCGA025130GA025131
length1,1541,197
definitionB6Ng01-205H07.b B6Ng01-205H07.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattgagaaatccaaagttagaagaaatattttttaaaaattctt
ttgaaactcacttgagagacaatggaggcatagtttcagatgagtgtcca
aattacatataagctagttgagctttttaacactgaaacctatcaagatc
tcttctagggaatggccttggatggaaatcaacatgattcaaagctaata
ccgagccagacttgagaaccactgttatgtccttgtttttcacagcgtgg
tccaaggttgaatagcagaagtgctgcttagaaatgtagttgaaatatcg
tgaaacttcaaacccttccttaggtgatccctgtgcaaagtaaattcaaa
aatctctgatggagagtctacatatactattcaattctgaaacgtataac
tttctaaataagcccttctcctgtgatcttcaggagatcatacaagcgca
aggcttacaaaggctcaaatagctgcacctgcctttgctcgtgacctctg
tcttctctttactcttctgagttaatgccctcgtccctcagagaaaaagc
ctgattccaatcttgatcctgattgtgaacatccttgatcctgacctagg
aaacccaaacattaccaggatatttataaatctagtgtcctttgataatc
tgatgctggaaacttttcttagtctctaggttaagcatcaacaatcatac
ttaaatgccactcctcattgtttttctcagtttctttgagtatataacgc
tactttgcatcagaacccagctctaatttagcagaatgattatggtgaca
tttggctttctacaaaagcccaattcgttgctttaaaagttcatagaggt
ctgaatacataggttgaactggatggtgatgctgaatgacacacaagcac
tgactttttccaattagccaacgagtacatggcttcttgagctcattttc
ccaccaacctactgggatagactttaatccaataaaaacacttcagagca
ggattcatcctccattccactgcagatggagcctctacacagcaaccttt
cagaccctgggattctgaagccaggacttcataaaggccctttacttcag
gtccttcctttctttcctaatgtaggacgccttcatgtcctttatggcca
tgtg
gaattcaatgaaagtaaagacacagcatacctaaacttataggacacagt
gaaagtagtgttaagaggaaaatttatagcactaactgctctcataaaga
aattggagagatcttataagatctcaagagcaacttaacagcacacctga
aagatttagaacaaaaagaaacaaatacatcccaagaggagtagatggca
agaaataatcaatctcagggttgaaatcaatcaagtagaaacaaagagaa
caatacaaacaaccaataaaaccaaaagctagttctttgagaaaatcacc
aacatagccaaactaactgaaagacccagtgacagtatccaaatgaacaa
aatcagaaatgatggaaatatagcaacagaaactgaggaaattcaaaaaa
aaatcaccagatcttgctataaaggtctttactcaacaaaactggaacat
ctagatgaagtgtattattttctagacagataacatgtaccaaagttaaa
tcaagggcaggggtaagctcatatctcctaaggaaatagaaggcttcatt
ccaaactctcaaccaaaaaaaaaaaaagaccaggccctctcaacacaaag
gataattgggctgagaaagaaaagcaatctacagattcaaggcaatctct
gtcaaactcaaaactcaattcttcacagagatggaaagagcaagtctcaa
ccttatatgaaacaacaaaaacccaggatagaaaaaaagcaattctcaac
aataaaagcacttctaggggaatcaccatctgcactacagagcaatagtc
ataaaaactgcatggtattgggtacagagacagacagattgatcaatgga
atagaagtgatgacccagaaataaatccacacacttatggatgcctgatc
tttgacaaagaagacaaatacatacattcatggaaaagaaaagaaaacat
gttcaatatatggtgctggtccaactggcagtttgtttatagaaaaaatg
aaaattgatccatatttataactttcacaaacctcagtccaagtggatca
tgatctcatataaacagatacactgaatcaaatagagagaacttgggaag
aaccttgagctcatgcacagtgaattccctgaacgaactcaatgccagct
ctagaatacgcatagtatggctacctcttgaactataaaggctcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_18204082_18205223
seq2: B6Ng01-205H07.b_42_1195 (reverse)

seq1  CACATGGGCATAA--GACATGAA-GCGTCCTACTATAGGAAAG-AAGGAA  46
      ||||||| |||||  |||||||| |||||||||  |||||||| ||||||
seq2  CACATGGCCATAAAGGACATGAAGGCGTCCTACATTAGGAAAGAAAGGAA  50

seq1  -GACCTG-AGTAA--GGGCTTTATGAAGT-CTGGCTTCAGA--TCCAGGG  89
       |||||| |||||  || ||||||||||| |||||||||||   ||||||
seq2  GGACCTGAAGTAAAGGGCCTTTATGAAGTCCTGGCTTCAGAATCCCAGGG  100

seq1  TCTGAAAGGTTGCTGTTGTGAGGCT-CATCTGCAGTGGAATGGAGGATGA  138
      ||||||||||||||||   |||||| ||||||||||||||||||||||||
seq2  TCTGAAAGGTTGCTGTGTAGAGGCTCCATCTGCAGTGGAATGGAGGATGA  150

seq1  ATTCTGCTCTTGAAGTGTTTTTATTGGATTAAAGTCTATCCCAGTAGGTT  188
      || |||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGCTC-TGAAGTGTTTTTATTGGATTAAAGTCTATCCCAGTAGGTT  199

seq1  GGTGGGAAAATGAGCTCAAGAAGCCATGTACTCGTTGGCTAATTGG-AAA  237
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGTGGGAAAATGAGCTCAAGAAGCCATGTACTCGTTGGCTAATTGGAAAA  249

seq1  AGTCAGTGCTTGTGTGTCATTCAGCATCACCATCCAGTTCAACCTATGTA  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTGCTTGTGTGTCATTCAGCATCACCATCCAGTTCAACCTATGTA  299

seq1  TTCAGACCTCTATGAACTTTTAAAGCAACGAATTGGGCTTTTGTAGAAAG  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACCTCTATGAACTTTTAAAGCAACGAATTGGGCTTTTGTAGAAAG  349

seq1  CCAAATGTCACCATAATCATTCTGCTAAATTAGAGCTGGGTTCTGATGCA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGTCACCATAATCATTCTGCTAAATTAGAGCTGGGTTCTGATGCA  399

seq1  AAGTAGCGTTATATACTCAAAGAAACTGAGAAAAACAATGAGGAGTGGCA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGCGTTATATACTCAAAGAAACTGAGAAAAACAATGAGGAGTGGCA  449

seq1  TTTAAGTATGATTGTTGATGCTTAACCTAGAGACTAAGAAAAGTTTCCAG  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTATGATTGTTGATGCTTAACCTAGAGACTAAGAAAAGTTTCCAG  499

seq1  CATCAGATTATCAAAGGACACTAGATTTATAAATATCCTGGTAATGTTTG  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGATTATCAAAGGACACTAGATTTATAAATATCCTGGTAATGTTTG  549

seq1  GGTTTCCTAGGTCAGGATCAAGGATGTTCACAATCAGGATCAAGATTGGA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCCTAGGTCAGGATCAAGGATGTTCACAATCAGGATCAAGATTGGA  599

seq1  ATCAGGCTTTTTCTCTGAGGGACGAGGGCATTAACTCAGAAGAGTAAAGA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGCTTTTTCTCTGAGGGACGAGGGCATTAACTCAGAAGAGTAAAGA  649

seq1  GAAGACAGAGGTCACGAGCAAAGGCAGGTGCAGCTATTTGAGCCTTTGTA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAGAGGTCACGAGCAAAGGCAGGTGCAGCTATTTGAGCCTTTGTA  699

seq1  AGCCTTGCGCTTGTATGATCTCCTGAAGATCACAGGAGAAGGGCTTATTT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGCGCTTGTATGATCTCCTGAAGATCACAGGAGAAGGGCTTATTT  749

seq1  AGAAAGTTATACGTTTCAGAATTGAATAGTATATGTAGACTCTCCATCAG  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTTATACGTTTCAGAATTGAATAGTATATGTAGACTCTCCATCAG  799

seq1  AGATTTTTGAATTTACTTTGCACAGGGATCACCTAAGGAAGGGTTTGAAG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTTGAATTTACTTTGCACAGGGATCACCTAAGGAAGGGTTTGAAG  849

seq1  TTTCACGATATTTCAACTACATTTCTAAGCAGCACTTCTGCTATTCAACC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACGATATTTCAACTACATTTCTAAGCAGCACTTCTGCTATTCAACC  899

seq1  TTGGACCACGCTGTGAAAAACAAGGACATAACAGTGGTTCTCAAGTCTGG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACCACGCTGTGAAAAACAAGGACATAACAGTGGTTCTCAAGTCTGG  949

seq1  CTCGGTATTAGCTTTGAATCATGTTGATTTCCATCCAAGGCCATTCCCTA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGTATTAGCTTTGAATCATGTTGATTTCCATCCAAGGCCATTCCCTA  999

seq1  GAAGAGATCTTGATAGGTTTCAGTGTTAAAAAGCTCAACTAGCTTATATG  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGATCTTGATAGGTTTCAGTGTTAAAAAGCTCAACTAGCTTATATG  1049

seq1  TAATTTGGACACTCATCTGAAACTATGCCTCCATTGTCTCTCAAGTGAGT  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGGACACTCATCTGAAACTATGCCTCCATTGTCTCTCAAGTGAGT  1099

seq1  TTCAAAAGAATTTTTAAAAAATATTTCTTCTAACTTTGGATTTCTCAATG  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAGAATTTTTAAAAAATATTTCTTCTAACTTTGGATTTCTCAATG  1149

seq1  AATTC  1142
      |||||
seq2  AATTC  1154