BAC Information

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BAC

Clone NameB6Ng01-209J21
Chromosome19 (Build37)
Map Location 8,722,912 - 8,857,220
singlet/doubletdoublet
Overlap geneChrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957
Upstream geneLOC433217, Slc22a19, LOC666543, BC014805, LOC632903, AB056442, LOC620946, LOC623030, 9530053H05Rik, EG434674, LOC100039705, D630002G06Rik, EG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6
Downstream genePolr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1, Asrgl1, EG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209J21.bB6Ng01-209J21.g
ACCGA028187GA028188
length1,078804
definitionB6Ng01-209J21.b B6Ng01-209J21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,722,912 - 8,724,003)(8,856,417 - 8,857,220)
sequence
gaattcaactgttacttgagtaccctagaaggaggaaggcagacacatag
accaccaccaccattaccaccaccaccaaagaactaaaaaaaaaaaaaaa
aaaaatagtaaggaggagcctggagaaatggctcagcatctaagagcact
ggtggctcttgctgaggaacaaggtatggctcccagcacccacacgctgg
cgcacagtcttctgtaactccagatccagggaatttgacaccctcgtctg
gcctcctagggcaccaggtatgtttacacatacacagagagagagagaga
gagagagagagagagacagagagagagacagagagagacagagagagaca
gagacagagagagagacagacagagacagacagagacagagacacagaga
gacacagagagaaagcaacaccaagagacagagagacgcaaaactctcat
atacattagaaaataaaaataaaatagcagactagacatagtagaggcag
agatacatgaatctctatgaattcaaggccaaccagagctatacacagtg
agacccttcccaaaaatcaattttttcgctaaaaaaggatagtgtggaaa
gagtaggtcaatcacccgacaggtgggaacctagatgggtgaaccatcca
gttcagtgcggaaagagtccaggtgaggctgcctatgtacagcatcttca
gcagaagggccagtcatttgtcatgagactaggggcttaacacatactcc
actttaaaaaaaaaatacaagaaaattaaaggattataacataagacttt
aaaatgtcattacttagaaggagtctgatcacttacctagttaagccaac
aaaatcaatatacaaataaaagtaatgaaaaagccacacaagaatattgg
gattgaaaaaccaaattatcaaaacagcaatagcaataagttgaaactac
tgtgttaaaacatgactttgaaggtaccacaacagtacccaaagctcacg
ttacttagcagttaggatactcacaatcagagagaaaaaaaaaaactgta
gatattttacgatccaatatctcttagt
gaattcaccctgcttgtcaattctctctctctccaggctgtgtgtggcta
tgggtcccaggaggcattgcccttgcgccctgcaagggagggtgatctct
acttcccggaggatcgagaagtgagcctggtggagctggcactagccacc
aacatccccaagggctgtgcagagacagctgtcagaggttgctgctaggc
tccttcctgggcttaggacaggaattgggtggtctgagtggtgctgatgg
gccagctttcacgtagggcagaatttggaggggtaaaatcccagctgacc
tccatctgtatcatctgattctagttcatgtctcctatctggatggcaaa
ggaaacctggcacctcagggatcaggtaaggcagtgtggatagtaaggct
gtctagaagagcgtatgctgagcctgaggcaggaatctgtggggccgagg
gtgggtgggagtagatggagctgagacccatggaacctacctgatcagag
tgcagctggagcctgtgcctgcttgtcctgcttacatggggttcttgtgg
gtgggttgtagttctggtcagggggcagcagcctccagaaggctatacct
ccatctgtgactacttccttcctgtctcctcacagtgcccagtgcagtgt
cttcactgacagatgacctgctcaaatactaccagcaagtgacacgggct
gtactgggagatgacccacagctgatgaaggtgaaagagtgagcctgact
aggcataaagtgaaagttttaaaacttgagatatttcagctatcttggtt
cctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_8722912_8724003
seq2: B6Ng01-209J21.b_47_1124

seq1  GAATTCAACTGTTACTTGAGTACCCTAGAAGGAGGAAGGCAGACACATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTGTTACTTGAGTACCCTAGAAGGAGGAAGGCAGACACATAG  50

seq1  ACCACCACCACCATTACCACCACCACCAAAGAACTAAAAAAAAAAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCACCACCATTACCACCACCACCAAAGAACTAAAAAAAAAAAAAAA  100

seq1  AAAAATAGTAAGGAGGAGCCTGGAGAAATGGCTCAGCATCTAAGAGCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAGTAAGGAGGAGCCTGGAGAAATGGCTCAGCATCTAAGAGCACT  150

seq1  GGTGGCTCTTGCTGAGGAACAAGGTATGGCTCCCAGCACCCACACGCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTCTTGCTGAGGAACAAGGTATGGCTCCCAGCACCCACACGCTGG  200

seq1  CGCACAGTCTTCTGTAACTCCAGATCCAGGGAATTTGACACCCTCGTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACAGTCTTCTGTAACTCCAGATCCAGGGAATTTGACACCCTCGTCTG  250

seq1  GCCTCCTAGGGCACCAGGTATGTTTACACATACACAGAGAGAGAGAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTAGGGCACCAGGTATGTTTACACATACACAGAGAGAGAGAGAGA  300

seq1  GAGAGAGAGAGAGAGACAGAGAGAGAGACAGAGAGAGACAGAGAGAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGACAGAGAGAGAGACAGAGAGAGACAGAGAGAGACA  350

seq1  GAGACAGAGAGAGAGACAGACAGAGACAGACAGAGACAGAGACACAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGAGAGAGAGACAGACAGAGACAGACAGAGACAGAGACACAGAGA  400

seq1  GACACAGAGAGAAAGCAACACCAAGAGACAGAGAGACGCAAAACTCTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGAGAGAAAGCAACACCAAGAGACAGAGAGACGCAAAACTCTCAT  450

seq1  ATACATTAGAAAATAAAAATAAAATAGCAGACTAGACATAGTAGAGGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTAGAAAATAAAAATAAAATAGCAGACTAGACATAGTAGAGGCAG  500

seq1  AGATACATGAATCTCTATGAATTCAAGGCCAACCAGAGCTATACACAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACATGAATCTCTATGAATTCAAGGCCAACCAGAGCTATACACAGTG  550

seq1  AGACCCTTCCCAAAAATCAATTTTTTCGCTAAAAAAGGATAGTGTGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTTCCCAAAAATCAATTTTTTCGCTAAAAAAGGATAGTGTGGAAA  600

seq1  GAGTAGGTCAATCACCCGACAGGTGGGAACCTAGATGGGTGAACCATCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGGTCAATCACCCGACAGGTGGGAACCTAGATGGGTGAACCATCCA  650

seq1  GTTCAGTGCGGAAAGAGTCCAGGTGAGGCTGCCTATGTACAGCATCTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTGCGGAAAGAGTCCAGGTGAGGCTGCCTATGTACAGCATCTTCA  700

seq1  GCAGAAGGGCCAGTCATTTGTCATGAGACTAGGGGCTTAACACATACTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGGGCCAGTCATTTGTCATGAGACTAGGGGCTTAACACATACTCC  750

seq1  ACTTTAAAAAAAAAATACAAGAAAATT-AAGGATTATAACATAAGACTTT  799
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACTTTAAAAAAAAAATACAAGAAAATTAAAGGATTATAACATAAGACTTT  800

seq1  AAAATGTCATTACTTAGAAGGAGTCTGATCACTTACCTAGTTAAGCCAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTCATTACTTAGAAGGAGTCTGATCACTTACCTAGTTAAGCCAAC  850

seq1  AAAATCAATATACAAATAAAAGTAATGAAAAAGCCACACAAGAATATT-G  898
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAAATCAATATACAAATAAAAGTAATGAAAAAGCCACACAAGAATATTGG  900

seq1  GATTGAAAAACCAAATTATCAAAACAGCAATAGCAATAAGTTGAAACTAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAAAAACCAAATTATCAAAACAGCAATAGCAATAAGTTGAAACTAC  950

seq1  TGTGTTAAAACATGACTTTGAAGGTACCACAACAGTACCCAAAGCTCAAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGTGTTAAAACATGACTTTGAAGGTACCACAACAGTACCCAAAGCTC-AC  999

seq1  GTTACTTAGGCAGTTAAGGATACTCAACCATCCAGAGAGGAAAAAAAAAA  1048
      |||||||| |||||| ||||||||||  ||  |||||||     ||||||
seq2  GTTACTTA-GCAGTT-AGGATACTCA--CAATCAGAGAG-----AAAAAA  1040

seq1  AAAAACTGTAAGATAATTTTTACGATCACAAATATCCTCTTAGT  1092
      ||||||||| |||||  |||||||||  | ||||| ||||||||
seq2  AAAAACTGT-AGATA--TTTTACGAT--CCAATAT-CTCTTAGT  1078

seq1: chr19_8856417_8857220
seq2: B6Ng01-209J21.g_67_870 (reverse)

seq1  CAGGAACC-AGATAGCTGAAAATATCTCAAGTTTTAAAACTTTCACTTTA  49
      |||||||| ||||||||| |||||||||||||||||||||||||||||||
seq2  CAGGAACCAAGATAGCTG-AAATATCTCAAGTTTTAAAACTTTCACTTTA  49

seq1  TGCCTAGTCAGGCTCACTCTTTCACCTTCATCAGCTGTGGGTCATCTCCC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAGTCAGGCTCACTCTTTCACCTTCATCAGCTGTGGGTCATCTCCC  99

seq1  AGTACAGCCCGTGTCACTTGCTGGTAGTATTTGAGCAGGTCATCTGTCAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAGCCCGTGTCACTTGCTGGTAGTATTTGAGCAGGTCATCTGTCAG  149

seq1  TGAAGACACTGCACTGGGCACTGTGAGGAGACAGGAAGGAAGTAGTCACA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACACTGCACTGGGCACTGTGAGGAGACAGGAAGGAAGTAGTCACA  199

seq1  GATGGAGGTATAGCCTTCTGGAGGCTGCTGCCCCCTGACCAGAACTACAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGGTATAGCCTTCTGGAGGCTGCTGCCCCCTGACCAGAACTACAA  249

seq1  CCCACCCACAAGAACCCCATGTAAGCAGGACAAGCAGGCACAGGCTCCAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCACAAGAACCCCATGTAAGCAGGACAAGCAGGCACAGGCTCCAG  299

seq1  CTGCACTCTGATCAGGTAGGTTCCATGGGTCTCAGCTCCATCTACTCCCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTCTGATCAGGTAGGTTCCATGGGTCTCAGCTCCATCTACTCCCA  349

seq1  CCCACCCTCGGCCCCACAGATTCCTGCCTCAGGCTCAGCATACGCTCTTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCTCGGCCCCACAGATTCCTGCCTCAGGCTCAGCATACGCTCTTC  399

seq1  TAGACAGCCTTACTATCCACACTGCCTTACCTGATCCCTGAGGTGCCAGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAGCCTTACTATCCACACTGCCTTACCTGATCCCTGAGGTGCCAGG  449

seq1  TTTCCTTTGCCATCCAGATAGGAGACATGAACTAGAATCAGATGATACAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTGCCATCCAGATAGGAGACATGAACTAGAATCAGATGATACAG  499

seq1  ATGGAGGTCAGCTGGGATTTTACCCCTCCAAATTCTGCCCTACGTGAAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGTCAGCTGGGATTTTACCCCTCCAAATTCTGCCCTACGTGAAAG  549

seq1  CTGGCCCATCAGCACCACTCAGACCACCCAATTCCTGTCCTAAGCCCAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCCATCAGCACCACTCAGACCACCCAATTCCTGTCCTAAGCCCAGG  599

seq1  AAGGAGCCTAGCAGCAACCTCTGACAGCTGTCTCTGCACAGCCCTTGGGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCCTAGCAGCAACCTCTGACAGCTGTCTCTGCACAGCCCTTGGGG  649

seq1  ATGTTGGTGGCTAGTGCCAGCTCCACCAGGCTCACTTCTCGATCCTCCGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGGTGGCTAGTGCCAGCTCCACCAGGCTCACTTCTCGATCCTCCGG  699

seq1  GAAGTAGAGATCACCCTCCCTTGCAGGGCGCAAGGGCAATGCCTCCTGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGAGATCACCCTCCCTTGCAGGGCGCAAGGGCAATGCCTCCTGGG  749

seq1  ACCCATAGCCACACACAGCCTGGAGAGAGAGAGAATTGACAAGCAGGGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATAGCCACACACAGCCTGGAGAGAGAGAGAATTGACAAGCAGGGTG  799

seq1  AATTC  804
      |||||
seq2  AATTC  804