BAC Information

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BAC

Clone NameB6Ng01-210M01
Chromosome19 (Build37)
Map Location 17,132,465 - 17,374,591
singlet/doubletdoublet
Overlap geneA230083H22Rik
Upstream geneGnaq, E030024N20Rik, LOC624438, Gna14, LOC666665, Vps13a, Foxb2
Downstream geneGcnt1, Rfk, Pcsk5, Eef1a1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210M01.bB6Ng01-210M01.g
ACCGA029010GA029011
length1,1591,109
definitionB6Ng01-210M01.b B6Ng01-210M01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,132,465 - 17,133,624)(17,373,470 - 17,374,591)
sequence
gaattcataataaaatcaccacagctgcgtgtaacaaagaattcttccag
ctgaaaaatatagttttcctggtggcatgattaataagaaaatgccatct
tcaagtgtttaaagtgggctcaaaaataaaagtgaattttttttgaaaaa
gcttcccatggtagttagcagacagttcactccacagtcacactgtgtgt
tgcccgtttaactctggcaaggtcatgagatttattccctcctgtttcac
ccatgctgtaggctaggaaatatactacttttaaaaaaaggccaaccaaa
tattagatatcaatgcaaggcctttgaaccaaacataaaatgttaagctg
ctaatatagagagatcacagcacaggagtgtactctaaacatggacagtg
gaagtggctacgtatgtgtagagtatttaggcagaagaatgctggagata
atcctgagcacagaaggaggcaataggatctgaggaaatatctctaaacc
aggcttctctgcctctaattcttcatttttatttttacttagcacatatg
cccctgtagaacacagggtaaaagctctttgaagggtttcctcaaaactt
gattcactttattcccataagaactctatgaaggagatagtaatgtcacc
tccacttttaagatagagaaacagagacacaaagaataagaacttgccca
aggtcatgtaagtacaaagaaagcaaagcccaatcatgctttcctcccag
ggtcctggggtttccttcgcattcacaacgccttgtgtaccactgacttt
cttctctacctatatcctgaccccagcctccatcctttgctcttcgttag
agaaaattagagttccagtagagtaaaagttcagtgaaaactaccaagac
attaagtgtgcatgagttctccaaaaccgcacactattgtgactgctaag
gtagaggggaatcgaatacaggcagctcttagcatcttaggagatcttca
gcttagtgggaacccagacattagcaaatagattattgcaagcaaataag
aagtgtcattaagaaaccagtggatattttctatgacctacttgacattg
gatgggaagtttgtataagcttcctgagaagagtctttcaggcttgtaag
ttgagatac

gaattctttatgcacatgtgggaggtcaaaggaaaaaaaagcacaataaa
aatattcatttttctccctgaaaatccagaaaaagccaaagaagtaaaga
tcattgtacagtggatattgctgtaagtgtcatgtgtttagtctgaaata
atcctcatgcattcatgctttaaatatttgttcaaaagctggagacactc
cttaagaggctgtggatcctctaggaaatagggcctccatagtagagaga
ggtcaccagagataggccttgcaaggttgtcacctgggccctaggccctg
ggcctgacgctctctgcttctatctgtcttgatgtgaagagcctcgaaat
cccaccatcagggagccgctcctcaaggccttccttgctgcagtggcatg
aaactctctaaaatcatgaggcaaactaaacatcgtctctcctgagctgt
tcctgtcagctgtcttggccacagtgacacacaagtaaccagtactttac
aagatgtgaagtgacaaccttttctttgttctctacaccgagaaacacat
ttcagaagtttccttgattatgccatctcctcccatttccccagtgtcac
caaaatcactgttgtgattattcagcgttcatcgttgcgcttattcatct
gttgatcaggtgcagcatcaggtgcagtgctccttgtatcaccatcatca
tgtcttctgatgttccagggcatagctgctattctacaaaaatgtggttg
aacgtaagtttggataaaaagatagagagggaaatgaatgaatattcatt
cattgatttctatattcatatggatttcatgctaactaaattgctattta
gtttatttttcacagacctgagtttgattttcttttctgaaaatcagaaa
agcagggctttagagacaccatacaataacttgccagttgtcagacattc
taaggtgccaactcactttccatctccttcaagtcactcctagtccttta
tctggccgtaccagaagtaccctgcattaaggtgggtctccatatcaaca
agcaacaggacatcctcctcaatacacaccagacatgcacacagtgggat
tcttctcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_17132465_17133624
seq2: B6Ng01-210M01.b_47_1205

seq1  GAATTCATAATAAAATCACCACAGCTGCGTGTAACAAAGAATTCTTCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAATAAAATCACCACAGCTGCGTGTAACAAAGAATTCTTCCAG  50

seq1  CTGAAAAATATAGTTTTCCTGGTGGCATGATTAATAAGAAAATGCCATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAATATAGTTTTCCTGGTGGCATGATTAATAAGAAAATGCCATCT  100

seq1  TCAAGTGTTTAAAGTGGGCTCAAAAATAAAAGTGAATTTTTTTTGAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTGTTTAAAGTGGGCTCAAAAATAAAAGTGAATTTTTTTTGAAAAA  150

seq1  GCTTCCCATGGTAGTTAGCAGACAGTTCACTCCACAGTCACACTGTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCCATGGTAGTTAGCAGACAGTTCACTCCACAGTCACACTGTGTGT  200

seq1  TGCCCGTTTAACTCTGGCAAGGTCATGAGATTTATTCCCTCCTGTTTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCGTTTAACTCTGGCAAGGTCATGAGATTTATTCCCTCCTGTTTCAC  250

seq1  CCATGCTGTAGGCTAGGAAATATACTACTTTTAAAAAAAGGCCAACCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTGTAGGCTAGGAAATATACTACTTTTAAAAAAAGGCCAACCAAA  300

seq1  TATTAGATATCAATGCAAGGCCTTTGAACCAAACATAAAATGTTAAGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGATATCAATGCAAGGCCTTTGAACCAAACATAAAATGTTAAGCTG  350

seq1  CTAATATAGAGAGATCACAGCACAGGAGTGTACTCTAAACATGGACAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATATAGAGAGATCACAGCACAGGAGTGTACTCTAAACATGGACAGTG  400

seq1  GAAGTGGCTACGTATGTGTAGAGTATTTAGGCAGAAGAATGCTGGAGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGCTACGTATGTGTAGAGTATTTAGGCAGAAGAATGCTGGAGATA  450

seq1  ATCCTGAGCACAGAAGGAGGCAATAGGATCTGAGGAAATATCTCTAAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGAGCACAGAAGGAGGCAATAGGATCTGAGGAAATATCTCTAAACC  500

seq1  AGGCTTCTCTGCCTCTAATTCTTCATTTTTATTTTTACTTAGCACATATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCTCTGCCTCTAATTCTTCATTTTTATTTTTACTTAGCACATATG  550

seq1  CCCCTGTAGAACACAGGGTAAAAGCTCTTTGAAGGGTTTCCTCAAAACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGTAGAACACAGGGTAAAAGCTCTTTGAAGGGTTTCCTCAAAACTT  600

seq1  GATTCACTTTATTCCCATAAGAACTCTATGAAGGAGATAGTAATGTCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCACTTTATTCCCATAAGAACTCTATGAAGGAGATAGTAATGTCACC  650

seq1  TCCACTTTTAAGATAGAGAAACAGAGACACAAAGAATAAGAACTTGCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTTTAAGATAGAGAAACAGAGACACAAAGAATAAGAACTTGCCCA  700

seq1  AGGTCATGTAAGTACAAAGAAAGCAAAGCCCAATCATGCTTTCCTCCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCATGTAAGTACAAAGAAAGCAAAGCCCAATCATGCTTTCCTCCCAG  750

seq1  GGTCCTGGGGTTTCCTTCGCATTCACAACGCCTTGTGTACCACTGACTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGGGGTTTCCTTCGCATTCACAACGCCTTGTGTACCACTGACTTT  800

seq1  CTTCTCTACCTATATCCTGACCCCAGCCTCCATCCTTTGCTCTTCGTTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTACCTATATCCTGACCCCAGCCTCCATCCTTTGCTCTTCGTTAG  850

seq1  AGAAAATTAGAGTTCCAGTAGAGTAAAAGTTCAGTGAAAACTACCAAGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATTAGAGTTCCAGTAGAGTAAAAGTTCAGTGAAAACTACCAAGAC  900

seq1  ATTAAGTGTGCATGAGTTCTCCAAAACCGCACACTATTGTGACTGCTAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATTAAGTGTGCATGAGTTCTCCAAAACCGCACACTATTGTGACTGCTAA-  949

seq1  GGTAGAGGGGAATCGAATACAGGCAGCTCTTAGCATCTTA-GAGATC-TC  998
      |||||||||||||||||||||||||||||||||||||||| |||||| ||
seq2  GGTAGAGGGGAATCGAATACAGGCAGCTCTTAGCATCTTAGGAGATCTTC  999

seq1  AGCTTAGTGGGGAAACCAGACATTAAGCAAATAGA-TATTGCAAGCAAAT  1047
      |||||||| ||||| ||||||||| |||||||||| ||||||||||||||
seq2  AGCTTAGT-GGGAACCCAGACATT-AGCAAATAGATTATTGCAAGCAAAT  1047

seq1  -AGAAGTGTCATTAAGAAACCAGTGGATA-TTTCTATGACCTACTTGACA  1095
       |||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAGAAGTGTCATTAAGAAACCAGTGGATATTTTCTATGACCTACTTGACA  1097

seq1  TTGGATGGG-AGGTTGTATAAAGCTTCCTTGAGAAGGAGTCTTTCAAGCT  1144
      ||||||||| || |||||| |||||||| |||||| |||||||||| |||
seq2  TTGGATGGGAAGTTTGTAT-AAGCTTCC-TGAGAA-GAGTCTTTCAGGCT  1144

seq1  TGTAAGTTTGAGATAC  1160
      |||||| |||||||||
seq2  TGTAAG-TTGAGATAC  1159


seq1: chr19_17373470_17374591
seq2: B6Ng01-210M01.g_66_1174 (reverse)

seq1  TAGAGAAGAATTCCCACTGTGTGCATGTCTGGGTGTGTA-TGAGGAGGGT  49
      |||||||||| ||||||||||||||||||| |||||||| |||||||| |
seq2  TAGAGAAGAA-TCCCACTGTGTGCATGTCT-GGTGTGTATTGAGGAGGAT  48

seq1  GTCCTGGTTGCCTTGGTTGATATGGGAAGACCCACCTAAATGCAGGGGTA  99
      ||||| |||||  | ||||||||||  |||||||||| |||||| |||||
seq2  GTCCT-GTTGC--TTGTTGATATGG--AGACCCACCTTAATGCA-GGGTA  92

seq1  CTTTCTGGTAACGGGCCAGATAAAAGGACTAGGAGGTGACTTGAAGGAAG  149
      | ||||||||   |||||||| |||||||||||| |||||||||||| ||
seq2  C-TTCTGGTA--CGGCCAGAT-AAAGGACTAGGA-GTGACTTGAAGG-AG  136

seq1  ATGGAAGGTGAGTTGGCACCTTAGAATGTCTGACAACTGGCAAGTTATTG  199
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAGTGAGTTGGCACCTTAGAATGTCTGACAACTGGCAAGTTATTG  186

seq1  TATGGTGTCTCTAAAGCCCTGCTTTTCTGATTTTCAGAAAAGAAAATCAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGTCTCTAAAGCCCTGCTTTTCTGATTTTCAGAAAAGAAAATCAA  236

seq1  ACTCAGGTCTGTGAAAAATAAACTAAATAGCAATTTAGTTAGCATGAAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGTCTGTGAAAAATAAACTAAATAGCAATTTAGTTAGCATGAAAT  286

seq1  CCATATGAATATAGAAATCAATGAATGAATATTCATTCATTTCCCTCTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATGAATATAGAAATCAATGAATGAATATTCATTCATTTCCCTCTCT  336

seq1  ATCTTTTTATCCAAACTTACGTTCAACCACATTTTTGTAGAATAGCAGCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTTATCCAAACTTACGTTCAACCACATTTTTGTAGAATAGCAGCT  386

seq1  ATGCCCTGGAACATCAGAAGACATGATGATGGTGATACAAGGAGCACTGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTGGAACATCAGAAGACATGATGATGGTGATACAAGGAGCACTGC  436

seq1  ACCTGATGCTGCACCTGATCAACAGATGAATAAGCGCAACGATGAACGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGATGCTGCACCTGATCAACAGATGAATAAGCGCAACGATGAACGCT  486

seq1  GAATAATCACAACAGTGATTTTGGTGACACTGGGGAAATGGGAGGAGATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATCACAACAGTGATTTTGGTGACACTGGGGAAATGGGAGGAGATG  536

seq1  GCATAATCAAGGAAACTTCTGAAATGTGTTTCTCGGTGTAGAGAACAAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAATCAAGGAAACTTCTGAAATGTGTTTCTCGGTGTAGAGAACAAAG  586

seq1  AAAAGGTTGTCACTTCACATCTTGTAAAGTACTGGTTACTTGTGTGTCAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTTGTCACTTCACATCTTGTAAAGTACTGGTTACTTGTGTGTCAC  636

seq1  TGTGGCCAAGACAGCTGACAGGAACAGCTCAGGAGAGACGATGTTTAGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCAAGACAGCTGACAGGAACAGCTCAGGAGAGACGATGTTTAGTT  686

seq1  TGCCTCATGATTTTAGAGAGTTTCATGCCACTGCAGCAAGGAAGGCCTTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCATGATTTTAGAGAGTTTCATGCCACTGCAGCAAGGAAGGCCTTG  736

seq1  AGGAGCGGCTCCCTGATGGTGGGATTTCGAGGCTCTTCACATCAAGACAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCGGCTCCCTGATGGTGGGATTTCGAGGCTCTTCACATCAAGACAG  786

seq1  ATAGAAGCAGAGAGCGTCAGGCCCAGGGCCTAGGGCCCAGGTGACAACCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGCAGAGAGCGTCAGGCCCAGGGCCTAGGGCCCAGGTGACAACCT  836

seq1  TGCAAGGCCTATCTCTGGTGACCTCTCTCTACTATGGAGGCCCTATTTCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGGCCTATCTCTGGTGACCTCTCTCTACTATGGAGGCCCTATTTCC  886

seq1  TAGAGGATCCACAGCCTCTTAAGGAGTGTCTCCAGCTTTTGAACAAATAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGATCCACAGCCTCTTAAGGAGTGTCTCCAGCTTTTGAACAAATAT  936

seq1  TTAAAGCATGAATGCATGAGGATTATTTCAGACTAAACACATGACACTTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGCATGAATGCATGAGGATTATTTCAGACTAAACACATGACACTTA  986

seq1  CAGCAATATCCACTGTACAATGATCTTTACTTCTTTGGCTTTTTCTGGAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATATCCACTGTACAATGATCTTTACTTCTTTGGCTTTTTCTGGAT  1036

seq1  TTTCAGGGAGAAAAATGAATATTTTTATTGTGCTTTTTTTTCCTTTGACC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGGAGAAAAATGAATATTTTTATTGTGCTTTTTTTTCCTTTGACC  1086

seq1  TCCCACATGTGCATAAAGAATTC  1122
      |||||||||||||||||||||||
seq2  TCCCACATGTGCATAAAGAATTC  1109


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