BAC Information

Click to search

BAC

Clone NameB6Ng01-211H10
Chromosome19 (Build37)
Map Location 8,712,670 - 8,889,324
singlet/doubletdoublet
Overlap geneChrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c
Upstream geneHrasls5, LOC433217, Slc22a19, LOC666543, BC014805, LOC632903, AB056442, LOC620946, LOC623030, 9530053H05Rik, EG434674, LOC100039705, D630002G06Rik, EG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6
Downstream geneHnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1, Asrgl1, EG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211H10.bB6Ng01-211H10.g
ACCGA029525GA029526
length1,161564
definitionB6Ng01-211H10.b B6Ng01-211H10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,712,670 - 8,713,826)(8,888,761 - 8,889,324)
sequence
gaattcccttataaatgaagatgatgctaatctcctcaacattttttttt
agatttaatatctgaccaaaatacacgtttacctcattccctgagtcaat
tccaaacaagtgcgcatggatgccaagaatgatcttccaatggatagttg
gggctatcagccacaccacatggaccactagaaagtctgttttatcaaca
cagtcatgatagtttttccttaggtcaataatatcaaagcctgtggctgc
ctcccaagaacatctcattaggataataggcagctaacacacataaccca
atgtgaaactggaccttctgagatgttaagcaattgaaatggctcacaaa
tcagcagggactacttaagcaagaaacataattgcaatgaagacatttca
cccaggaccacatggccatgtctggtaagtacaacaaaccgggttgtcat
ctgggaaagacaagtcccagaatgccccttgagaagaactcctaaagatg
tcacaacctgggaagagagactcaccagtctccatgaaatgaaaaaaaaa
aaaaaaaaaaaaaaaaaaaaaaaaagccctggggccagcaagatggttca
gtcaataaagatgcctgagcctgatgacccatgtttgatctgatctctgg
aatccaaatggtgaatggagaaaaacaactcctgtaagttgttcttataa
attagaaatgctagacaagaggctagagaaatgactcagtaaacaaacat
gagaaccagaatatttggatccatacaaaagccaaatatggcaatataaa
tataaacatatacatatataaatataaacatatacatatatatttatatg
catatgaatgaaaccccaagaccctaagtgctgaaacagaaagatgcctg
gagctcattggccattgatttaagcccaaattcaggttcaatgaagagga
cctgactcattaataaattaaataaataaataataaataaataataaaat
ggaggaactgggaagagatagtagatagttcactggcctagaagccatac
tactcgtcaggagcactgagcctttgttccagcatctacatcaatggctt
cacaacctgcctgttaactcaggctgtagaaggaattcttgtcctctgct
agactcccagg
gaattctcctcacacaacttcattcttggactgtgtcccaacactatagc
tgtgcaccacatgtgtccctggtgccttttgggccaaaaagacagtcatt
caatcttatggaactagagttacagcctgtaatgagacaccacgtgggtg
ccagaactgaacccggatcctctgtaaaagcaacgagttttcttaatagc
tgaaccatctcttcagccctagtttttaactgtttttaaaatcgttactc
agtcccaggaaggaaccggcaaggtggtcatgaaagtctttgctggggag
ctgtcggcccttgatagctgtcaaaagaggcagagttagttgtctatgag
gtgatccccttggaggtcagccacactccagcacaggccccattcccaag
agtagttagacaacacaaacttgactagatggggctgaggaagaagaaaa
ctcaaaacttatgtggggagaaagtcagggagggcagagacagcaggata
gatatgggaggagttggaaaagaggggaataaaattaatatgtattgtgt
aaaattctcgaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_8712670_8713826
seq2: B6Ng01-211H10.b_46_1206

seq1  GAATTCCCTTATAAATGAAGATGATGCTAATCTCCTCAACATTTTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTATAAATGAAGATGATGCTAATCTCCTCAACATTTTTTTTT  50

seq1  AGATTTAATATCTGACCAAAATACACGTTTACCTCATTCCCTGAGTCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTAATATCTGACCAAAATACACGTTTACCTCATTCCCTGAGTCAAT  100

seq1  TCCAAACAAGTGCGCATGGATGCCAAGAATGATCTTCCAATGGATAGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACAAGTGCGCATGGATGCCAAGAATGATCTTCCAATGGATAGTTG  150

seq1  GGGCTATCAGCCACACCACATGGACCACTAGAAAGTCTGTTTTATCAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTATCAGCCACACCACATGGACCACTAGAAAGTCTGTTTTATCAACA  200

seq1  CAGTCATGATAGTTTTTCCTTAGGTCAATAATATCAAAGCCTGTGGCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATGATAGTTTTTCCTTAGGTCAATAATATCAAAGCCTGTGGCTGC  250

seq1  CTCCCAAGAACATCTCATTAGGATAATAGGCAGCTAACACACATAACCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAAGAACATCTCATTAGGATAATAGGCAGCTAACACACATAACCCA  300

seq1  ATGTGAAACTGGACCTTCTGAGATGTTAAGCAATTGAAATGGCTCACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAACTGGACCTTCTGAGATGTTAAGCAATTGAAATGGCTCACAAA  350

seq1  TCAGCAGGGACTACTTAAGCAAGAAACATAATTGCAATGAAGACATTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGGGACTACTTAAGCAAGAAACATAATTGCAATGAAGACATTTCA  400

seq1  CCCAGGACCACATGGCCATGTCTGGTAAGTACAACAAACCGGGTTGTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGACCACATGGCCATGTCTGGTAAGTACAACAAACCGGGTTGTCAT  450

seq1  CTGGGAAAGACAAGTCCCAGAATGCCCCTTGAGAAGAACTCCTAAAGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAAGACAAGTCCCAGAATGCCCCTTGAGAAGAACTCCTAAAGATG  500

seq1  TCACAACCTGGGAAGAGAGACTCACCAGTCTCCATGAAATGAAAAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACCTGGGAAGAGAGACTCACCAGTCTCCATGAAATGAAAAAAAAA  550

seq1  AAAAAAAAAAAAAAAAAAAAAAAAAGCCCTGGGGCCAGCAAGATGGTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAAAAAGCCCTGGGGCCAGCAAGATGGTTCA  600

seq1  GTCAATAAAGATGCCTGAGCCTGATGACCCATGTTTGATCTGATCTCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATAAAGATGCCTGAGCCTGATGACCCATGTTTGATCTGATCTCTGG  650

seq1  AATCCAAATGGTGAATGGAGAAAAACAACTCCTGTAAGTTGTTCTTATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAAATGGTGAATGGAGAAAAACAACTCCTGTAAGTTGTTCTTATAA  700

seq1  ATTAGAAATGCTAGACAAGAGGCTAGAGAAATGACTCAGTAAACAAACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAATGCTAGACAAGAGGCTAGAGAAATGACTCAGTAAACAAACAT  750

seq1  GAGAACCAGAATATTTGGATCCATACAAAAGCCAAATATGGCAATATAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACCAGAATATTTGGATCCATACAAAAGCCAAATATGGCAATATAAA  800

seq1  TATAAACATATACATATATAAATATAAACATATACATATATATTTATATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACATATACATATATAAATATAAACATATACATATATATTTATATG  850

seq1  CATATGAATGAAACCCCAAGACCCTAAGTGCTGAAACAGAAAGATGCCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGAATGAAACCCCAAGACCCTAAGTGCTGAAACAGAAAGATGCCTG  900

seq1  GAGCTCATTGGCCATTGATTTAAGCCC-AATTCAGGTTCAATG-AGAGGA  948
      ||||||||||||||||||||||||||| ||||||||||||||| ||||||
seq2  GAGCTCATTGGCCATTGATTTAAGCCCAAATTCAGGTTCAATGAAGAGGA  950

seq1  CCTGACTCATAAATAAA-TAAATAAATAAATAAATAAATAAATAATAAAA  997
      |||||||||| |||||| ||||||||||||| ||||||||||||||||||
seq2  CCTGACTCATTAATAAATTAAATAAATAAAT-AATAAATAAATAATAAAA  999

seq1  TGGAGGAACTGG--AGAGATAGTTAGATAGTTCACTGGCTAAGAGCCCAT  1045
      ||||||||||||  |||||||| ||||||||||||||||  |||  ||||
seq2  TGGAGGAACTGGGAAGAGATAG-TAGATAGTTCACTGGCCTAGAAGCCAT  1048

seq1  ACTACTCGTCCAGAGCACCTGAG-CTTTGTTCCCAGCATCTACATCAAAT  1094
      ||||||||||  ||||| ||||| ||||||| |||||||||||||| |||
seq2  ACTACTCGTCAGGAGCA-CTGAGCCTTTGTT-CCAGCATCTACATC-AAT  1095

seq1  GGC-TCACAA-CTGCCTG-TAACTCCAGCTGTAG-AGGATCTGTCCCCCT  1140
      ||| |||||| ||||||| ||||||  ||||||| ||||  | |   |||
seq2  GGCTTCACAACCTGCCTGTTAACTCAGGCTGTAGAAGGAATTCTTGTCCT  1145

seq1  CTGCTAGACTCCACAGG  1157
      |||||||||||| ||||
seq2  CTGCTAGACTCC-CAGG  1161

seq1: chr19_8888761_8889324
seq2: B6Ng01-211H10.g_65_628 (reverse)

seq1  TCTTTGAGAATTTTACACAATACATATTAATTTTATTCCCCTCTTTTCCA  50
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCGAGAATTTTACACAATACATATTAATTTTATTCCCCTCTTTTCCA  50

seq1  ACTCCTCCCATATCTATCCTGCTGTCTCTGCCCTCCCTGACTTTCTCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTCCCATATCTATCCTGCTGTCTCTGCCCTCCCTGACTTTCTCCCC  100

seq1  ACATAAGTTTTGAGTTTTCTTCTTCCTCAGCCCCATCTAGTCAAGTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGTTTTGAGTTTTCTTCTTCCTCAGCCCCATCTAGTCAAGTTTGT  150

seq1  GTTGTCTAACTACTCTTGGGAATGGGGCCTGTGCTGGAGTGTGGCTGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTAACTACTCTTGGGAATGGGGCCTGTGCTGGAGTGTGGCTGACC  200

seq1  TCCAAGGGGATCACCTCATAGACAACTAACTCTGCCTCTTTTGACAGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGGGATCACCTCATAGACAACTAACTCTGCCTCTTTTGACAGCTA  250

seq1  TCAAGGGCCGACAGCTCCCCAGCAAAGACTTTCATGACCACCTTGCCGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGGCCGACAGCTCCCCAGCAAAGACTTTCATGACCACCTTGCCGGT  300

seq1  TCCTTCCTGGGACTGAGTAACGATTTTAAAAACAGTTAAAAACTAGGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTGGGACTGAGTAACGATTTTAAAAACAGTTAAAAACTAGGGCT  350

seq1  GAAGAGATGGTTCAGCTATTAAGAAAACTCGTTGCTTTTACAGAGGATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGATGGTTCAGCTATTAAGAAAACTCGTTGCTTTTACAGAGGATCC  400

seq1  GGGTTCAGTTCTGGCACCCACGTGGTGTCTCATTACAGGCTGTAACTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCAGTTCTGGCACCCACGTGGTGTCTCATTACAGGCTGTAACTCTA  450

seq1  GTTCCATAAGATTGAATGACTGTCTTTTTGGCCCAAAAGGCACCAGGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATAAGATTGAATGACTGTCTTTTTGGCCCAAAAGGCACCAGGGAC  500

seq1  ACATGTGGTGCACAGCTATAGTGTTGGGACACAGTCCAAGAATGAAGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGGTGCACAGCTATAGTGTTGGGACACAGTCCAAGAATGAAGTTG  550

seq1  TGTGAGGAGAATTC  564
      ||||||||||||||
seq2  TGTGAGGAGAATTC  564