BAC Information

Click to search

BAC

Clone NameB6Ng01-212A12
Chromosome19 (Build37)
Map Location 21,937,893 - 21,990,011
singlet/doubletdoublet
Overlap genenone
Upstream geneTmc1, LOC100042294, LOC100041602, LOC100041613, Zfand5, Gda, LOC100041633, 1110059E24Rik, 5730446C15Rik, Tmem2
Downstream geneEG433229, Trpm3, EG433230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212A12.bB6Ng01-212A12.g
ACCGA029933GA029934
length1,2171,147
definitionB6Ng01-212A12.b B6Ng01-212A12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,988,793 - 21,990,011)(21,937,893 - 21,939,030)
sequence
gaattctacatcttcatctgaaggctgctaatagaagactggcttccagg
cagctaggatgagggtcttaaagcccacgcccacagtggcacacctaatc
tccatcaaggccacactttccaatagcgcagctccctgggccaagcatat
acaaaccatcacagcatggatgctctaccaagacacagttttcatgtgct
gtgaataacaaaagaaaaagcaatcctttggtttacataagtagagaggc
ttttctgtaagcagctctttagcaaacgaagttcatggtagcaatgagat
ttattttgtttttttaaatgaaaacaccatgaaaaacgctagtatttgtc
cttaggattgaattatgtggtcttaagcctttttttccactttgaattag
cttcaaaaaatggatcccagactatgaaacaatatatttaataaatctcc
aaaaatgtcccaagaggcacactttaggcatttatttaactggttctgag
actaaagtaattaacagtcttgcattcttcctggcccctttaattataaa
gcgagacctaaatatttcatcatccccacatgattagcatgctggtgcag
atgaaaagggacgagggaggtctctagggaacaggtactgagcacttcac
atgtacaataaacatccccagccaccatgagtctggacatctggtagaga
ttttgtagtcatgaacatctggaatgtaatttgttacatgtagcagaaac
tgcctccctaagaccatctctactttattcaaagcaatttgcagtcttat
aatctgttcacaccctccacctagcagcttggaaaataatttccacaacg
cctcttgcagcaacccttagagtgtctctgtcttgcaagatagcaagtgg
ttacatttcaagcagtttccctcacttcttccatcccattgatgaactct
ggctttataatgaaagagaccttagatgactgtcaggcttcattagttaa
tgctgtcatctattcgcagcctgtggaccggacagtatataggcagcaca
gcagaagcagaggctgaccaggcaggagtcacttggtgttctggcacagt
gtttcctttctggagtacatagaactttgcgaatacttttctcacaggtt
cctggtgaatggtgggaccattacaatggctgctatcaataaggcatcta
cctttcattttgtgaga
gaattcccaggcctcttgtaactcctcatcctgtttatgagttccctgtt
caacactcaggatttttagtccttgctaacctaatttcgaggcaggttcc
gtgtctcaaattcattctctttgggcagtaattccatttaaatgtctgct
acaatacctacagtgctaaaaagaacgcgtacctgaaagttttaattatc
taactctggctgatttgtaaggcaattttaccctcccacgtactgaccta
aatgtgaaagtgcagccatctcagtgtggagagaattataaacggagaag
agccacaacttacagaatgagtcactgagtcattgagtcaaccccagcaa
caggatgtgagcacttggctttgaaaggagtcctttctgttgatcaggcg
tgttgtgaataatagctgattttcctcctgttttaggtaatgttccaaaa
acacagaccagtgacactatcaggctctgaagggtacaccccttttgaat
ttgagcccaaggatttagccacaagcaagcgtatttacctggttatattt
ctggaagtctttgtttgtagtgtcttgtgtttctgcaggtcaccttattt
caatagctaaaaggaagagatttggtaattatagctttcccctgttgcag
ctccatattggaaacacacacatccaagtacgggaaatgctacacgagca
agatgagactggacaggagcagggacttcctgtgcagtttacccatgggt
ggggagagatcagttacaaacatgaaatgatcccagaggaggggttgctg
tactgatgatctgtgatttctatctcttgtgaattccttcgaacaagttg
cttttaattcaattaatgatgtagtatataaaaaagccgagtccaaaatc
tctggataactatgttagtcatctttttttttcttaggaagataaatatc
tcctgggaatttattataataaatgtttaataaatttgggattctaatat
tatttatattttttagtgattctttaacacattctgaattacaatccaga
atcatttccccaaaatagcagattctgttgatctagattctttaagccct
ttctggagatagataagtcatctttctaagtcattccgttcaataca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_21988793_21990011
seq2: B6Ng01-212A12.b_47_1263 (reverse)

seq1  TCTCAC-AAATGAAAGGTTAGGATG-CTTATTGATAGCAGCCATTTGTAA  48
      |||||| |||||||||||   |||| ||||||||||||||||| ||||||
seq2  TCTCACAAAATGAAAGGT--AGATGCCTTATTGATAGCAGCCA-TTGTAA  47

seq1  TGG-CCCAACAATCA-CAGGAA-CTGTGAGAAAAGTAATCGCAAAAGTCT  95
      ||| |||| || ||| |||||| |||||||||||||| |||||||  |||
seq2  TGGTCCCACCATTCACCAGGAACCTGTGAGAAAAGTATTCGCAAAGTTCT  97

seq1  ATGTACTCAGGAAAGG-AACACTGTGCCCAGAACA-CAAGTGAACTCCCT  143
      ||||||||  |||||| ||||||||| |||||||| |||||| ||| |||
seq2  ATGTACTCCAGAAAGGAAACACTGTG-CCAGAACACCAAGTG-ACT-CCT  144

seq1  GCCTGGTCAAGCCTCTGCTTCCTGCTGTGCCTGCCTATATACTGTCCGGT  193
      |||||||| ||||||||||| |||||||| ||||||||||||||||||||
seq2  GCCTGGTC-AGCCTCTGCTT-CTGCTGTG-CTGCCTATATACTGTCCGGT  191

seq1  CCACAGGCTGCGAATAGATGACAGCATTAACTAATGAAGCCTGACAGTCA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGCTGCGAATAGATGACAGCATTAACTAATGAAGCCTGACAGTCA  241

seq1  TCTAAGGTCTCTTTCATTATAAAGCCAGAGTTCATCAATGGGATGGAAGA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGGTCTCTTTCATTATAAAGCCAGAGTTCATCAATGGGATGGAAGA  291

seq1  AGTGAGGGAAACTGCTTGAAATGTAACCACTTGCTATCTTGCAAGACAGA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGGAAACTGCTTGAAATGTAACCACTTGCTATCTTGCAAGACAGA  341

seq1  GACACTCTAAGGGTTGCTGCAAGAGGCGTTGTGGAAATTATTTTCCAAGC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTCTAAGGGTTGCTGCAAGAGGCGTTGTGGAAATTATTTTCCAAGC  391

seq1  TGCTAGGTGGAGGGTGTGAACAGATTATAAGACTGCAAATTGCTTTGAAT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGGTGGAGGGTGTGAACAGATTATAAGACTGCAAATTGCTTTGAAT  441

seq1  AAAGTAGAGATGGTCTTAGGGAGGCAGTTTCTGCTACATGTAACAAATTA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGAGATGGTCTTAGGGAGGCAGTTTCTGCTACATGTAACAAATTA  491

seq1  CATTCCAGATGTTCATGACTACAAAATCTCTACCAGATGTCCAGACTCAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCAGATGTTCATGACTACAAAATCTCTACCAGATGTCCAGACTCAT  541

seq1  GGTGGCTGGGGATGTTTATTGTACATGTGAAGTGCTCAGTACCTGTTCCC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTGGGGATGTTTATTGTACATGTGAAGTGCTCAGTACCTGTTCCC  591

seq1  TAGAGACCTCCCTCGTCCCTTTTCATCTGCACCAGCATGCTAATCATGTG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACCTCCCTCGTCCCTTTTCATCTGCACCAGCATGCTAATCATGTG  641

seq1  GGGATGATGAAATATTTAGGTCTCGCTTTATAATTAAAGGGGCCAGGAAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGATGAAATATTTAGGTCTCGCTTTATAATTAAAGGGGCCAGGAAG  691

seq1  AATGCAAGACTGTTAATTACTTTAGTCTCAGAACCAGTTAAATAAATGCC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAGACTGTTAATTACTTTAGTCTCAGAACCAGTTAAATAAATGCC  741

seq1  TAAAGTGTGCCTCTTGGGACATTTTTGGAGATTTATTAAATATATTGTTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTGTGCCTCTTGGGACATTTTTGGAGATTTATTAAATATATTGTTT  791

seq1  CATAGTCTGGGATCCATTTTTTGAAGCTAATTCAAAGTGGAAAAAAAGGC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTCTGGGATCCATTTTTTGAAGCTAATTCAAAGTGGAAAAAAAGGC  841

seq1  TTAAGACCACATAATTCAATCCTAAGGACAAATACTAGCGTTTTTCATGG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGACCACATAATTCAATCCTAAGGACAAATACTAGCGTTTTTCATGG  891

seq1  TGTTTTCATTTAAAAAAACAAAATAAATCTCATTGCTACCATGAACTTCG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCATTTAAAAAAACAAAATAAATCTCATTGCTACCATGAACTTCG  941

seq1  TTTGCTAAAGAGCTGCTTACAGAAAAGCCTCTCTACTTATGTAAACCAAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTAAAGAGCTGCTTACAGAAAAGCCTCTCTACTTATGTAAACCAAA  991

seq1  GGATTGCTTTTTCTTTTGTTATTCACAGCACATGAAAACTGTGTCTTGGT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGCTTTTTCTTTTGTTATTCACAGCACATGAAAACTGTGTCTTGGT  1041

seq1  AGAGCATCCATGCTGTGATGGTTTGTATATGCTTGGCCCAGGGAGCTGCG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATCCATGCTGTGATGGTTTGTATATGCTTGGCCCAGGGAGCTGCG  1091

seq1  CTATTGGAAAGTGTGGCCTTGATGGAGATTAGGTGTGCCACTGTGGGCGT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGGAAAGTGTGGCCTTGATGGAGATTAGGTGTGCCACTGTGGGCGT  1141

seq1  GGGCTTTAAGACCCTCATCCTAGCTGCCTGGAAGCCAGTCTTCTATTAGC  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTTAAGACCCTCATCCTAGCTGCCTGGAAGCCAGTCTTCTATTAGC  1191

seq1  AGCCTTCAGATGAAGATGTAGAATTC  1219
      ||||||||||||||||||||||||||
seq2  AGCCTTCAGATGAAGATGTAGAATTC  1217

seq1: chr19_21937893_21939030
seq2: B6Ng01-212A12.g_66_1212

seq1  GAATTCCCAGGCCTCTTGTAACTCCTCATCCTGTTTATGAGTTCCCTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGGCCTCTTGTAACTCCTCATCCTGTTTATGAGTTCCCTGTT  50

seq1  CAACACTCAGGATTTTTAGTCCTTGCTAACCTAATTTCGAGGCAGGTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTCAGGATTTTTAGTCCTTGCTAACCTAATTTCGAGGCAGGTTCC  100

seq1  GTGTCTCAAATTCATTCTCTTTGGGCAGTAATTCCATTTAAATGTCTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCAAATTCATTCTCTTTGGGCAGTAATTCCATTTAAATGTCTGCT  150

seq1  ACAATACCTACAGTGCTAAAAAGAACGCGTACCTGAAAGTTTTAATTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACCTACAGTGCTAAAAAGAACGCGTACCTGAAAGTTTTAATTATC  200

seq1  TAACTCTGGCTGATTTGTAAGGCAATTTTACCCTCCCACGTACTGACCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTGGCTGATTTGTAAGGCAATTTTACCCTCCCACGTACTGACCTA  250

seq1  AATGTGAAAGTGCAGCCATCTCAGTGTGGAGAGAATTATAAACGGAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAAAGTGCAGCCATCTCAGTGTGGAGAGAATTATAAACGGAGAAG  300

seq1  AGCCACAACTTACAGAATGAGTCACTGAGTCATTGAGTCAACCCCAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAACTTACAGAATGAGTCACTGAGTCATTGAGTCAACCCCAGCAA  350

seq1  CAGGATGTGAGCACTTGGCTTTGAAAGGAGTCCTTTCTGTTGATCAGGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGTGAGCACTTGGCTTTGAAAGGAGTCCTTTCTGTTGATCAGGCG  400

seq1  TGTTGTGAATAATAGCTGATTTTCCTCCTGTTTTAGGTAATGTTCCAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGAATAATAGCTGATTTTCCTCCTGTTTTAGGTAATGTTCCAAAA  450

seq1  ACACAGACCAGTGACACTATCAGGCTCTGAAGGGTACACCCCTTTTGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGACCAGTGACACTATCAGGCTCTGAAGGGTACACCCCTTTTGAAT  500

seq1  TTGAGCCCAAGGATTTAGCCACAAGCAAGCGTATTTACCTGGTTATATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCCCAAGGATTTAGCCACAAGCAAGCGTATTTACCTGGTTATATTT  550

seq1  CTGGAAGTCTTTGTTTGTAGTGTCTTGTGTTTCTGCAGGTCACCTTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGTCTTTGTTTGTAGTGTCTTGTGTTTCTGCAGGTCACCTTATTT  600

seq1  CAATAGCTAAAAGGAAGAGATTTGGTAATTATAGCTTTCCCCTGTTGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGCTAAAAGGAAGAGATTTGGTAATTATAGCTTTCCCCTGTTGCAG  650

seq1  CTCCATATTGGAAACACACACATCCAAGTACGGGAAATGCTACACGAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATATTGGAAACACACACATCCAAGTACGGGAAATGCTACACGAGCA  700

seq1  AGATGAGACTGGACAGGAGCAGGGACTTCCTGTGCAGTTTACCCATGGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGACTGGACAGGAGCAGGGACTTCCTGTGCAGTTTACCCATGGGT  750

seq1  GGGGAGAGATCAGTTACAAACATGAAATGATCCCAGAGGAGGGGTTGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGAGATCAGTTACAAACATGAAATGATCCCAGAGGAGGGGTTGCTG  800

seq1  TACTGATGATCTGTGATTTCTATCTCTTGTGAATTCCTTCGAACAAGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGATGATCTGTGATTTCTATCTCTTGTGAATTCCTTCGAACAAGTTG  850

seq1  CTTTTAATTCAATTAATGATGTAGTATATAAAAAAGCCGAGTCCAAAATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAATTCAATTAATGATGTAGTATATAAAAAAGCCGAGTCCAAAATC  900

seq1  TCTGGATAACTATGTTAGTCATC-TTTTTTTCCTTAGGAAGATAAATATC  949
      ||||||||||||||||||||||| ||||||| ||||||||||||||||||
seq2  TCTGGATAACTATGTTAGTCATCTTTTTTTTTCTTAGGAAGATAAATATC  950

seq1  TCCTGGGAATTTATTATAATTAAATGTTTAATAAATTTGG--ATCT-ATA  996
      ||||||||||||||||||| ||||||||||||||||||||   ||| |||
seq2  TCCTGGGAATTTATTATAA-TAAATGTTTAATAAATTTGGGATTCTAATA  999

seq1  TTATTTATATTTTTTAGGTTGATTCTTT-ACACATTCTG-ATTACAAATC  1044
      |||||||||||||||||  ||||||||| |||||||||| ||||| ||||
seq2  TTATTTATATTTTTTAG--TGATTCTTTAACACATTCTGAATTAC-AATC  1046

seq1  AAGAATCATTTCCCCAAAATAGCAGA-TCTGTTGGAATCTAGA-TCTTT-  1091
       ||||||||||||||||||||||||| |||||||  ||||||| ||||| 
seq2  CAGAATCATTTCCCCAAAATAGCAGATTCTGTTG--ATCTAGATTCTTTA  1094

seq1  AGCC--TTCTGGAG-TAGAT-AGTCATC-TTCTAAGTCA-TCCCTTCAAT  1135
      ||||  |||||||| ||||| ||||||| |||||||||| ||| ||||||
seq2  AGCCCTTTCTGGAGATAGATAAGTCATCTTTCTAAGTCATTCCGTTCAAT  1144

seq1  ACA  1138
      |||
seq2  ACA  1147