BAC Information

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BAC

Clone NameB6Ng01-212J22
Chromosome19 (Build37)
Map Location 43,004,362 - 43,222,286
singlet/doubletdoublet
Overlap geneLOC545291
Upstream geneExosc1, Zdhhc16, Mms19l, Ubtd1, Ankrd2, 0610010D20Rik, 4933411K16Rik, BC023055, Pi4k2a, Avpi1, Marveld1, EG628994, LOC100042633, Zfyve27, Sfrp5, 4933417O08Rik, Crtac1, D19Ertd386e, Loxl4, 4833409A17Rik, Hps1
Downstream geneEG627624, Cnnm1, Got1, Nkx2-3, LOC100042700, LOC100043245, Slc25a28, Entpd7, Cox15, Cutc, Abcc2, Dnmbp, LOC668408, Cpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212J22.bB6Ng01-212J22.g
ACCGA030370GA030371
length1,1571,002
definitionB6Ng01-212J22.b B6Ng01-212J22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,004,362 - 43,005,498)(43,221,293 - 43,222,286)
sequence
gaattccctgaggccacattttattctattttgtgtctccaggatttggc
actttgcctggtgccagtaatacttccccttaactgttgtcaaacagact
gggagaaatatttcagatcatttagatcttcttgcctaatagaagtcagt
gagagagaaaggttctggccagtgtacctggtcccaaagtgattacactg
ggatgcagaaatccagaagttttgagtattctcaggctcgaacgctctcc
aagaatgcctgaactcggagggtgtggtgtttggatatgacattagggcg
agaggataaggatgctcagacctcctctttcgttctcaatggtgcttctc
tatgatggcttcaaagagaagtttctttcagaggtagttttgaacatgaa
ccattcattcattcattcattcattcattcacatgatttagcttcctctt
ccttttttacagaattcagccattgcatggatatggaccaaagtcatttg
ctctcaaacccagcgcatcaatgagcgtgagcgacgagggtctccttaac
cagccctccacgtaagcccccaggaaaagaaaacaagctaacttgccatt
tcttcactaaactacttagaattaactgctaaaatattttttcagtaaaa
taaagaaaccctctaaataaaaataagagttttacttgattttacaagta
gggcaaagttggaagtatgaagagaaaaaaaaatctgttttttgaaacaa
acctttaatatgattcccatgtggagtttttaattctttgaattgtactt
ttttgttttaattaatttataataattgtacatatttatagggatactgt
gtactatttcagttatataatgaagattttcatgtcctcattattttctt
tacatttagagcctctgaacttctctttctagttactgaataaactatct
tactatgaacagttactcttaatcatgctggaagaatattgaacaatact
ttcaccacctcactgtgttattatgggtacctgttatccaatttgctatt
ttttccttcttctcctcttctggtgtctgctattttctaagttgcatgag
tattttaacctcttgcaatagggaaacacacaggtattttgtctttctcc
agtctgg
gaattctcttttcagatccgtgtttctgtgatacagaattaatgtgaata
ttttatcaagttttcatggaggaaaaacaaaacagaaatgatagggtctg
ggcatgtgaagttttaggctgctgaggttgttacagcacatcatatactt
ttgatgatgctaacattcagagtagacgatgacataaaaactattctaga
attgttcccttgatacgaagtatttcagtctcattgttttttctcttaaa
agtaataggtagtcattgtaggaagtatagaaaagtacagaacaatatga
cattgtgtaaagttcactcaaataccttcaagtatgttaagttattatta
gcactgaagataaaatatcttcctagcaaaacagaagcaattcatgattt
tggcatctttcccctgtgcttctttttttctttgttttgtttttgttctt
cagagcgaatcacttgctaaacttgttgagatattgatatgcacactatt
tcggatattgctttgtttttgaaaatttatcttgatatagggactggcct
tggggcgaagcccccacacccccctgctcttgtttcccggctgcttgggt
agcagtgtttagagtgtgatgaagctgctaacgttttgcagcctatggat
gaccatctttgattttcctctttgcccctgagcacagagggcaggtatca
taatgttaccgtggttcagctttctcagcttacactcatagaacctgggc
aactttttcctgttaagcattcattgtgtgtgtaaggagatacgggtctc
aggcgtcctttctgacgctgcgaagcatgttctgaagttgctagggatgg
gctgtgctggattaagaagtgcttgctgtatggtctttgggcaacacatt
tggagcaatctactttttattttaggattccttccagccaacataaatac
tctcagctgatgctaaatttgtgtgaagcctaagaatggagggtgctttt
ct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_43004362_43005498
seq2: B6Ng01-212J22.b_47_1203

seq1  GAATTCCCTGAGGCCACATTTTATTCTATTTTGTGTCTCCAGGATTTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGAGGCCACATTTTATTCTATTTTGTGTCTCCAGGATTTGGC  50

seq1  ACTTTGCCTGGTGCCAGTAATACTTCCCCTTAACTGTTGTCAAACAGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCCTGGTGCCAGTAATACTTCCCCTTAACTGTTGTCAAACAGACT  100

seq1  GGGAGAAATATTTCAGATCATTTAGATCTTCTTGCCTAATAGAAGTCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAATATTTCAGATCATTTAGATCTTCTTGCCTAATAGAAGTCAGT  150

seq1  GAGAGAGAAAGGTTCTGGCCAGTGTACCTGGTCCCAAAGTGATTACACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAAAGGTTCTGGCCAGTGTACCTGGTCCCAAAGTGATTACACTG  200

seq1  GGATGCAGAAATCCAGAAGTTTTGAGTATTCTCAGGCTCGAACGCTCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCAGAAATCCAGAAGTTTTGAGTATTCTCAGGCTCGAACGCTCTCC  250

seq1  AAGAATGCCTGAACTCGGAGGGTGTGGTGTTTGGATATGACATTAGGGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGCCTGAACTCGGAGGGTGTGGTGTTTGGATATGACATTAGGGCG  300

seq1  AGAGGATAAGGATGCTCAGACCTCCTCTTTCGTTCTCAATGGTGCTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATAAGGATGCTCAGACCTCCTCTTTCGTTCTCAATGGTGCTTCTC  350

seq1  TATGATGGCTTCAAAGAGAAGTTTCTTTCAGAGGTAGTTTTGAACATGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATGGCTTCAAAGAGAAGTTTCTTTCAGAGGTAGTTTTGAACATGAA  400

seq1  CCATTCATTCATTCATTCATTCATTCATTCACATGATTTAGCTTCCTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCATTCATTCATTCATTCATTCATTCACATGATTTAGCTTCCTCTT  450

seq1  CCTTTTTTACAGAATTCAGCCATTGCATGGATATGGACCAAAGTCATTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTTACAGAATTCAGCCATTGCATGGATATGGACCAAAGTCATTTG  500

seq1  CTCTCAAACCCAGCGCATCAATGAGCGTGAGCGACGAGGGTCTCCTTAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAAACCCAGCGCATCAATGAGCGTGAGCGACGAGGGTCTCCTTAAC  550

seq1  CAGCCCTCCACGTAAGCCCCCAGGAAAAGAAAACAAGCTAACTTGCCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTCCACGTAAGCCCCCAGGAAAAGAAAACAAGCTAACTTGCCATT  600

seq1  TCTTCACTAAACTACTTAGAATTAACTGCTAAAATATTTTTTCAGTAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACTAAACTACTTAGAATTAACTGCTAAAATATTTTTTCAGTAAAA  650

seq1  TAAAGAAACCCTCTAAATAAAAATAAGAGTTTTACTTGATTTTACAAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAACCCTCTAAATAAAAATAAGAGTTTTACTTGATTTTACAAGTA  700

seq1  GGGCAAAGTTGGAAGTATGAAGAGAAAAAAAAATCTGTTTTTTGAAACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAAGTTGGAAGTATGAAGAGAAAAAAAAATCTGTTTTTTGAAACAA  750

seq1  ACCTTTAATATGATTCCCATGTGGAGTTTTTAATTCTTTGAATTGTAC-T  799
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACCTTTAATATGATTCCCATGTGGAGTTTTTAATTCTTTGAATTGTACTT  800

seq1  TTTTGTTTTAATTAATTTATAATAATTGTACATATTTATA-GGATACTGT  848
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTTTGTTTTAATTAATTTATAATAATTGTACATATTTATAGGGATACTGT  850

seq1  GTACTATTTCAGTTATATAATGAAGATTTTCATGTCCTCATTA-TTTCTT  897
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTACTATTTCAGTTATATAATGAAGATTTTCATGTCCTCATTATTTTCTT  900

seq1  TACATTTAGAGCCTCTGAAC-TCTC-TTCTAGTTACTG-ATAAACTATCT  944
      |||||||||||||||||||| |||| |||||||||||| |||||||||||
seq2  TACATTTAGAGCCTCTGAACTTCTCTTTCTAGTTACTGAATAAACTATCT  950

seq1  TACTATGAACAGTTAC-CTT-ATCATGCTGGA--GATA-TGAAC-ATACT  988
      |||||||||||||||| ||| |||||||||||   ||| ||||| |||||
seq2  TACTATGAACAGTTACTCTTAATCATGCTGGAAGAATATTGAACAATACT  1000

seq1  TCCACCACCTCACTGTGTTATTAT-GGTACCTGTTATCCAAATTTGCTAT  1037
      | |||||||||||||||||||||| |||||||||||||| ||||||||||
seq2  TTCACCACCTCACTGTGTTATTATGGGTACCTGTTATCC-AATTTGCTAT  1049

seq1  TTTTCCCT--CTCTCCTCTTCTAGTGTCTGCTATTTTCTAGTTTGCATGA  1085
      |||| |||   ||||||||||| |||||||||||||||||  ||||||||
seq2  TTTTTCCTTCTTCTCCTCTTCTGGTGTCTGCTATTTTCTAAGTTGCATGA  1099

seq1  ATTATTTTACCTCTTGC-ATAGGG-AACACACA-GTA-TTTGTC-TTCT-  1129
       |  ||| ||||||||| |||||| |||||||| ||| |||||| |||| 
seq2  GTATTTTAACCTCTTGCAATAGGGAAACACACAGGTATTTTGTCTTTCTC  1149

seq1  CAGTCTGG  1137
      ||||||||
seq2  CAGTCTGG  1157

seq1: chr19_43221293_43222286
seq2: B6Ng01-212J22.g_66_1067 (reverse)

seq1  AGAAAACCACCCTCCATTTCTTAAGC-TCACAC-AATTTAGCATCAGCTG  48
      |||||| ||||||||| |||||| || |||||| ||||||||||||||||
seq2  AGAAAAGCACCCTCCA-TTCTTAGGCTTCACACAAATTTAGCATCAGCTG  49

seq1  -GGGTATTTATGTT-GCTGGAAGGAATCATAAAATAAAAAGTAAGATTGC  96
       | ||||||||||| ||||||||||||| ||||||||||||| |||||||
seq2  AGAGTATTTATGTTGGCTGGAAGGAATCCTAAAATAAAAAGT-AGATTGC  98

seq1  TCC-AATGTGTTGCCCAAAGGCCATACAGCAAGCACTTCTTAATCCAGCA  145
      ||| |||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCCAAATGTGTTGCCCAAAGACCATACAGCAAGCACTTCTTAATCCAGCA  148

seq1  CAG-CCATCCCTAGCAAC-TCAGAACATGCTTCGCAGCGTCAG-AAGGAC  192
      ||| |||||||||||||| |||||||||||||||||||||||| ||||||
seq2  CAGCCCATCCCTAGCAACTTCAGAACATGCTTCGCAGCGTCAGAAAGGAC  198

seq1  GCCTGAG-CCCGTATCTCCTTACACACACAATGAATGCTTAACAGG-AAA  240
      ||||||| |||||||||||||||||||||||||||||||||||||| |||
seq2  GCCTGAGACCCGTATCTCCTTACACACACAATGAATGCTTAACAGGAAAA  248

seq1  AGTTGCCCAGGTTCTATGAGTGTAAGCTGAGAAAGCTGAACCACGGTAAC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCCCAGGTTCTATGAGTGTAAGCTGAGAAAGCTGAACCACGGTAAC  298

seq1  ATTATGATACCTGCCCTCTGTGCTCAGGGGCAAAGAGGAAAATCAAAGAT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGATACCTGCCCTCTGTGCTCAGGGGCAAAGAGGAAAATCAAAGAT  348

seq1  GGTCATCCATAGGCTGCAAAACGTTAGCAGCTTCATCACACTCTAAACAC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATCCATAGGCTGCAAAACGTTAGCAGCTTCATCACACTCTAAACAC  398

seq1  TGCTACCCAAGCAGCCGGGAAACAAGAGCAGGGGGGTGTGGGGGCTTCGC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACCCAAGCAGCCGGGAAACAAGAGCAGGGGGGTGTGGGGGCTTCGC  448

seq1  CCCAAGGCCAGTCCCTATATCAAGATAAATTTTCAAAAACAAAGCAATAT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGGCCAGTCCCTATATCAAGATAAATTTTCAAAAACAAAGCAATAT  498

seq1  CCGAAATAGTGTGCATATCAATATCTCAACAAGTTTAGCAAGTGATTCGC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAAATAGTGTGCATATCAATATCTCAACAAGTTTAGCAAGTGATTCGC  548

seq1  TCTGAAGAACAAAAACAAAACAAAGAAAAAAAGAAGCACAGGGGAAAGAT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGAACAAAAACAAAACAAAGAAAAAAAGAAGCACAGGGGAAAGAT  598

seq1  GCCAAAATCATGAATTGCTTCTGTTTTGCTAGGAAGATATTTTATCTTCA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAATCATGAATTGCTTCTGTTTTGCTAGGAAGATATTTTATCTTCA  648

seq1  GTGCTAATAATAACTTAACATACTTGAAGGTATTTGAGTGAACTTTACAC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAATAATAACTTAACATACTTGAAGGTATTTGAGTGAACTTTACAC  698

seq1  AATGTCATATTGTTCTGTACTTTTCTATACTTCCTACAATGACTACCTAT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCATATTGTTCTGTACTTTTCTATACTTCCTACAATGACTACCTAT  748

seq1  TACTTTTAAGAGAAAAAACAATGAGACTGAAATACTTCGTATCAAGGGAA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTAAGAGAAAAAACAATGAGACTGAAATACTTCGTATCAAGGGAA  798

seq1  CAATTCTAGAATAGTTTTTATGTCATCGTCTACTCTGAATGTTAGCATCA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTAGAATAGTTTTTATGTCATCGTCTACTCTGAATGTTAGCATCA  848

seq1  TCAAAAGTATATGATGTGCTGTAACAACCTCAGCAGCCTAAAACTTCACA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGTATATGATGTGCTGTAACAACCTCAGCAGCCTAAAACTTCACA  898

seq1  TGCCCAGACCCTATCATTTCTGTTTTGTTTTTCCTCCATGAAAACTTGAT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGACCCTATCATTTCTGTTTTGTTTTTCCTCCATGAAAACTTGAT  948

seq1  AAAATATTCACATTAATTCTGTATCACAGAAACACGGATCTGAAAAGAGA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTCACATTAATTCTGTATCACAGAAACACGGATCTGAAAAGAGA  998

seq1  ATTC  994
      ||||
seq2  ATTC  1002