BAC Information

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BAC

Clone NameB6Ng01-213J01
Chromosome19 (Build37)
Map Location 58,085,145 - 58,086,178
singlet/doubletsinglet
Overlap geneAtrnl1
Upstream geneAblim1, EG668259, AI450540, Trub1, LOC100043038
Downstream geneGfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213J01.bB6Ng01-213J01.g
ACCGA031050GA031051
length2281,039
definitionB6Ng01-213J01.b B6Ng01-213J01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
aatgctcctaatcagcaggaagtagtctgtcaatatcgaaaccctctttc
tgttctatcctttttcctttcctgcctactgttagggggttgaaagggtg
gaagaagggggtagagaagggtggatgattactttcccacctagtactca
aaaatagcctcaaattagaaggcaatattatttgccattctttaaccaag
tcctaatggtactttttccatggggtgt
gaattccaggtccagtgaaacacctgtctcaaaaagtagggtggaaagca
gttgagaaaaatgtcagtgtcgacctctgggttctttatgtacataacca
catctgcatgcagaccccatacacgtgcacctacaggaacaggtaagcac
acatgcaaaagcaaaaatagggagataagtcagtcataaattcagtcact
tgtcaccttcctaacccactcagctcagtaacgggtggagcctgtttgct
tagtacttagcattggaaaagtggcaaaatgccctcatttaatgaagtct
ttaagaagaaacaagcagtcattgttaaaatcttggtgcataacttctaa
gagtctgcataggggtgggactgtatgtgtgttgcctacatgcatgttta
ctgtggttaagtctccatgacttgaaatgcatcctcttgtttccaagagt
aaaaagatcattggatacaaccccagtgctgcgatccattgctccagctt
tctttcattcccatttccatgggcttgcttttttctttctcatatgacta
tgcatatgtatttactgtggattgtcttttgtgttttttatctaagagaa
ctgtctttatcttttgatttatacattgagatcattcattttaatgtaat
taatatggtttggttacaatctactatgctattatttatgtataaagtgg
ttcagagtttcctgctctatgtcctcagtctcttattttactcaacattt
ctttctccatcactgtgtacactaagtctattcaatttcatcagcaggtc
aaattgtcacagcgatctggcatttctatgctgtctgtcttccaacttaa
atttctagtgttcacaccaaactgatggcctttctgcttgcggtgagatc
acacttcacccatgaaccgttcattgtattttacgtctaggatgtgcaac
ttttctaccctaacttcatcttctagggcgggtgatctttattgtgtatt
gtctgctttaaccctggtgaagaagaaggaagagggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_58085145_58086178
seq2: B6Ng01-213J01.g_68_1106

seq1  GAATTCCAGGTCCAGTGAAACACCTGTCTCAAAAAGTAGGGTGGAAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTCCAGTGAAACACCTGTCTCAAAAAGTAGGGTGGAAAGCA  50

seq1  GTTGAGAAAAATGTCAGTGTCGACCTCTGGGTTCTTTATGTACATAACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGAAAAATGTCAGTGTCGACCTCTGGGTTCTTTATGTACATAACCA  100

seq1  CATCTGCATGCAGACCCCATACACGTGCACCTACAGGAACAGGTAAGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCATGCAGACCCCATACACGTGCACCTACAGGAACAGGTAAGCAC  150

seq1  ACATGCAAAAGCAAAAATAGGGAGATAAGTCAGTCATAAATTCAGTCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCAAAAGCAAAAATAGGGAGATAAGTCAGTCATAAATTCAGTCACT  200

seq1  TGTCACCTTCCTAACCCACTCAGCTCAGTAACGGGTGGAGCCTGTTTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACCTTCCTAACCCACTCAGCTCAGTAACGGGTGGAGCCTGTTTGCT  250

seq1  TAGTACTTAGCATTGGAAAAGTGGCAAAATGCCCTCATTTAATGAAGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACTTAGCATTGGAAAAGTGGCAAAATGCCCTCATTTAATGAAGTCT  300

seq1  TTAAGAAGAAACAAGCAGTCATTGTTAAAATCTTGGTGCATAACTTCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAGAAACAAGCAGTCATTGTTAAAATCTTGGTGCATAACTTCTAA  350

seq1  GAGTCTGCATAGGGGTGGGACTGTATGTGTGTTGCCTACATGCATGTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTGCATAGGGGTGGGACTGTATGTGTGTTGCCTACATGCATGTTTA  400

seq1  CTGTGGTTAAGTCTCCATGACTTGAAATGCATCCTCTTGTTTCCAAGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTTAAGTCTCCATGACTTGAAATGCATCCTCTTGTTTCCAAGAGT  450

seq1  AAAAAGATCATTGGATACAACCCCAGTGCTGCGATCCATTGCTCCAGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGATCATTGGATACAACCCCAGTGCTGCGATCCATTGCTCCAGCTT  500

seq1  TCTTTCATTCCCATTTCCATGGGCTTGCTTTTTTCTTTCTCATATGACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCATTCCCATTTCCATGGGCTTGCTTTTTTCTTTCTCATATGACTA  550

seq1  TGCATATGTATTTACTGTGGATTGTCTTTTGTGTTTTTTATCTAAGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATGTATTTACTGTGGATTGTCTTTTGTGTTTTTTATCTAAGAGAA  600

seq1  CTGTCTTTATCTTTTGATTTATACATTGAGATCATTCATTTTAATGTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTTATCTTTTGATTTATACATTGAGATCATTCATTTTAATGTAAT  650

seq1  TAATATGGTTTGGTTACAATCTACTATGCTATTATTTATGTATAAAGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATGGTTTGGTTACAATCTACTATGCTATTATTTATGTATAAAGTGG  700

seq1  TTCAGAG-TTCCTGCTCTATGTCCTCAGTCTCTTATTTTACTCAACATTT  749
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGTTTCCTGCTCTATGTCCTCAGTCTCTTATTTTACTCAACATTT  750

seq1  CTTTCTCCATCACTGTGTACACTAAGTCTATTCAATTTCATCAGCAGGTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCCATCACTGTGTACACTAAGTCTATTCAATTTCATCAGCAGGTC  800

seq1  AAATTGTCACAGCGATCTGGCATTTCTATGCTGTCTGTCTTCCAACTTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTCACAGCGATCTGGCATTTCTATGCTGTCTGTCTTCCAACTTAA  850

seq1  ATTTCTAGTGTTCACACCAAACTGATGGCCTTTCTGCTTGCGGTGAGATC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTAGTGTTCACACCAAACTGATGGCCTTTCTGCTTGCGGTGAGATC  900

seq1  ACAC-TCACCCATGAACCGTTCATTGTATTTTACGTCTAGGATGTGCACC  948
      |||| ||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACACTTCACCCATGAACCGTTCATTGTATTTTACGTCTAGGATGTGCAAC  950

seq1  TTTTCTACCCTAACTTCACCTTCTAGGGCGGGTGATC-TTATTGTGTATT  997
      |||||||||||||||||| |||||||||||||||||| ||||||||||||
seq2  TTTTCTACCCTAACTTCATCTTCTAGGGCGGGTGATCTTTATTGTGTATT  1000

seq1  GTCTGCTTTAAACCCTGTGAAG-AGAAGG-AGAGGGAGA  1034
      ||||||||||| ||  |||||| |||||| |||||||||
seq2  GTCTGCTTTAACCCTGGTGAAGAAGAAGGAAGAGGGAGA  1039