BAC Information

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BAC

Clone NameB6Ng01-213J23
Chromosome19 (Build37)
Map Location 26,135,756 - 26,219,656
singlet/doubletdoublet
Overlap gene1700048O14Rik
Upstream geneDock8, Ankrd15, LOC433233, LOC383474, Dmrt1, Dmrt3, Dmrt2, EG667806
Downstream geneLOC100041846, LOC100041857, Smarca2, Gm815, LOC100042576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213J23.bB6Ng01-213J23.g
ACCGA031092GA031093
length1,146810
definitionB6Ng01-213J23.b B6Ng01-213J23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,135,756 - 26,136,897)(26,218,855 - 26,219,656)
sequence
gaattcatgggcttttgaatttgtttatattctatacattgcaggactat
tgttcatgttataaaatagtggaatggaaggaaatttttttgaggaggtg
aggaagttctttctgtcccctctacagctccttgaagagtaatttcagtt
tttccttgactatttaatacctgttccctgagaattcctctgtagtgaag
tatgttccaatagtccatttcctcaccatttttcaggttcttgaaacact
gtgtgtcaatttacactcttcagagcttccttctgaagccacagcagaat
aggcaccactattatgggttgtctattctcagggctcttgcagaatgccc
accctaatgtaatatttagtaaatacttgctagtttaacaatgataatgc
aattgcccatactgtgcaggagtttctttataaagttgacaaattctagt
taatgagaaggataaaatcctttttggaattcaaatattcatcggggaag
acataaaaatgaaatgattataacaagtaggtatatatcatgtttgaatg
tggtaaatgcactgagaaagtcaaacaaaataactatattgaaaatgcta
gagttcagataaacccattaggtggctagagtcaacttaagtttgataga
agtgtcaaaacatgccctggagaaaggcagcctgttctgtgaaggatgct
gggaaaactggatgtctacatgcagagggatgacagtagatccacacttt
ttcaccatgtacaaaaatcaactttaaaataaaatcaaagatttttaaca
tgatatatgtcagttgtgcgggcatctggagggtgtcatatgtagagagc
agctagggcaaatgtctggggaagatgggagtatagtaaattaagaggct
aatgggacccaaaaatatgccttattgagccggggagtactggaaagaca
gagtggtggtgttacagttaacaattacaaggaatagagttgccataact
ccatagaagccaccatattggatgaccattataaaatggtgctgggtcct
attgtttgtaatcagtatcagaatgccaagtagacagttaaactgaagtg
gaattataggaaagtcctgggttttaatgtgtcattggataaatgt

gaattctttagagtagaatgtgtcaaaagaagacaaaagttatatatcct
gtttcttagtatttgatgtggctaattaagaaatacctacagagccagac
aaaatcccagaatggaggaagggaggtggatagaaagttctgcccctcgc
agagaagcaatttgcctgtgattgctgctgggattactgctttcttcaat
ggactggcacctggtgtgtctaccacactccaggagtaatctttcaacat
aagacatacttgatttcttttgtggggagacacacacacagagagggaga
gagagagagacagagacagagacagagacagacagagggacagagagaca
gaaacagagacagagacagacagagaagcagagagagacagagagacaga
aagagacagagagaaagacagaaacagaagcagagagagacagagagaaa
gacagaaagagacagagaaagacagagacagacagagaggcagagagaga
cagagagaaagacagaaagagacagagaaagacagagacagacagagagg
cagagagagacagagagaatgaagatgagaaagtagggatacaggggagg
atccggaagaagatggaggaggggatgtatatgagcaaaatgaactgtac
aaaactttccaaagaataaattttttaaagacatattcatcaagaacatg
aaacctaggcctactgacagctttactgcatttttcggatccctttggcg
ctagtccctcaggaagggaatcttcaggtcgttttctctgcttgattcct
tccaagtcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_26135756_26136897
seq2: B6Ng01-213J23.b_44_1188

seq1  GAATTCATGGGCTTTTGAATTTGTTTATATTCTATACATTGCAGGACTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGGCTTTTGAATTTGTTTATATTCTATACATTGCAGGACTAT  50

seq1  TGTTCATGTTATAAAATAGTGGAATGGAAGGAAATTTTTTTGAGGAGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATGTTATAAAATAGTGGAATGGAAGGAAATTTTTTTGAGGAGGTG  100

seq1  AGGAAGTTCTTTCTGTCCCCTCTACAGCTCCTTGAAGAGTAATTTCAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTTCTTTCTGTCCCCTCTACAGCTCCTTGAAGAGTAATTTCAGTT  150

seq1  TTTCCTTGACTATTTAATACCTGTTCCCTGAGAATTCCTCTGTAGTGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTGACTATTTAATACCTGTTCCCTGAGAATTCCTCTGTAGTGAAG  200

seq1  TATGTTCCAATAGTCCATTTCCTCACCATTTTTCAGGTTCTTGAAACACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCCAATAGTCCATTTCCTCACCATTTTTCAGGTTCTTGAAACACT  250

seq1  GTGTGTCAATTTACACTCTTCAGAGCTTCCTTCTGAAGCCACAGCAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCAATTTACACTCTTCAGAGCTTCCTTCTGAAGCCACAGCAGAAT  300

seq1  AGGCACCACTATTATGGGTTGTCTATTCTCAGGGCTCTTGCAGAATGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACCACTATTATGGGTTGTCTATTCTCAGGGCTCTTGCAGAATGCCC  350

seq1  ACCCTAATGTAATATTTAGTAAATACTTGCTAGTTTAACAATGATAATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAATGTAATATTTAGTAAATACTTGCTAGTTTAACAATGATAATGC  400

seq1  AATTGCCCATACTGTGCAGGAGTTTCTTTATAAAGTTGACAAATTCTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCCCATACTGTGCAGGAGTTTCTTTATAAAGTTGACAAATTCTAGT  450

seq1  TAATGAGAAGGATAAAATCCTTTTTGGAATTCAAATATTCATCGGGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGAAGGATAAAATCCTTTTTGGAATTCAAATATTCATCGGGGAAG  500

seq1  ACATAAAAATGAAATGATTATAACAAGTAGGTATATATCATGTTTGAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAAATGAAATGATTATAACAAGTAGGTATATATCATGTTTGAATG  550

seq1  TGGTAAATGCACTGAGAAAGTCAAACAAAATAACTATATTGAAAATGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAATGCACTGAGAAAGTCAAACAAAATAACTATATTGAAAATGCTA  600

seq1  GAGTTCAGATAAACCCATTAGGTGGCTAGAGTCAACTTAAGTTTGATAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCAGATAAACCCATTAGGTGGCTAGAGTCAACTTAAGTTTGATAGA  650

seq1  AGTGTCAAAACATGCCCTGGAGAAAGGCAGCCTGTTCTGTGAAGGATGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCAAAACATGCCCTGGAGAAAGGCAGCCTGTTCTGTGAAGGATGCT  700

seq1  GGGAAAACTGGATGTCTACATGCAGAGGGATGACAGTAGATCCACAC-TT  749
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGGAAAACTGGATGTCTACATGCAGAGGGATGACAGTAGATCCACACTTT  750

seq1  TTCACCATGTACAAAAATCAAC-TTAAAAT-AAATCAAAGATTTTTAACA  797
      |||||||||||||||||||||| ||||||| |||||||||||||||||||
seq2  TTCACCATGTACAAAAATCAACTTTAAAATAAAATCAAAGATTTTTAACA  800

seq1  TGATATATGTCAGTTGTGC-GGCATCTGGAGGGTGTCATATGTAGAGAGC  846
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGATATATGTCAGTTGTGCGGGCATCTGGAGGGTGTCATATGTAGAGAGC  850

seq1  AGCTAGGGCAAATGTCTGGGGAAGATGGGAGTATAGTAAATTAAGAGGCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGGGCAAATGTCTGGGGAAGATGGGAGTATAGTAAATTAAGAGGCT  900

seq1  AATGGGACCCAAAAATATGCGTAATTGAGCCGGGGAGTACTGG-AAGACA  945
      |||||||||||||||||||| | |||||||||||||||||||| ||||| 
seq2  AATGGGACCCAAAAATATGCCTTATTGAGCCGGGGAGTACTGGAAAGAC-  949

seq1  AGAGT-GTGGTGTTACAG-TAACAAATACAAGG-ATAGAGTTGCCATTAA  992
      ||||| |||||||||||| |||||| ||||||| |||||||||||| |||
seq2  AGAGTGGTGGTGTTACAGTTAACAATTACAAGGAATAGAGTTGCCA-TAA  998

seq1  CT-CATAGAAGCCA-CATA-TGGATGAACCATATAAAAATGTGTCTGGGT  1039
      || ||||||||||| |||| ||||||| |  |||||||  ||| ||||||
seq2  CTCCATAGAAGCCACCATATTGGATGACCATTATAAAATGGTG-CTGGGT  1047

seq1  CCTATTGTTTGAAATCAGTATCAGATGCCCAAGTAGACAGGTTAAACAGG  1089
      ||||||||||| |||||||||||||   ||||||||||| |||||||  |
seq2  CCTATTGTTTGTAATCAGTATCAGAATGCCAAGTAGACA-GTTAAAC-TG  1095

seq1  AAGTTGGATATATAAGAAAGTCCTGGGTTTTTAATTGTGTCATTGGATAA  1139
      ||| ||||  |||| ||||||||||||||||  | |||||||||||||||
seq2  AAG-TGGAATTATAGGAAAGTCCTGGGTTTT--AATGTGTCATTGGATAA  1142

seq1  ATG  1142
      |||
seq2  ATG  1145


seq1: chr19_26218855_26219656
seq2: B6Ng01-213J23.g_70_879 (reverse)

seq1  AGGACTTGG-AGGAATCAAGC--AGGAAACGACCTGAAG-GTCCCCTCCT  46
      ||||||||| |||||||||||  || |||||||||||||  |||| ||||
seq2  AGGACTTGGAAGGAATCAAGCAGAGAAAACGACCTGAAGATTCCCTTCCT  50

seq1  GA-GGACTAGCGCCAATGGTATCCG-AAAATGCAGTAAAGCTGTCAGTAG  94
      || ||||||||||||| || ||||| ||||||||||||||||||||||||
seq2  GAGGGACTAGCGCCAAAGGGATCCGAAAAATGCAGTAAAGCTGTCAGTAG  100

seq1  GCCTAGG-TTCATGTTCTTGATGAATATGTCTTTAAAAAATTTATTCTTT  143
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGGTTTCATGTTCTTGATGAATATGTCTTTAAAAAATTTATTCTTT  150

seq1  GG-AAGTTTTGTACAGTTCATTTTGCTCATATACATCCCCTCCTCCATCT  192
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTTTTGTACAGTTCATTTTGCTCATATACATCCCCTCCTCCATCT  200

seq1  TCTTCCGGATCCTCCCCTGTATCCCTACTTTCTCATCTTCATTCTCTCTG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCGGATCCTCCCCTGTATCCCTACTTTCTCATCTTCATTCTCTCTG  250

seq1  TCTCTCTCTGCCTCTCTGTCTGTCTCTGTCTTTCTCTGTCTCTTTCTGTC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTGCCTCTCTGTCTGTCTCTGTCTTTCTCTGTCTCTTTCTGTC  300

seq1  TTTCTCTCTGTCTCTCTCTGCCTCTCTGTCTGTCTCTGTCTTTCTCTGTC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCTGTCTCTCTCTGCCTCTCTGTCTGTCTCTGTCTTTCTCTGTC  350

seq1  TCTTTCTGTCTTTCTCTCTGTCTCTCTCTGCTTCTGTTTCTGTCTTTCTC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTGTCTTTCTCTCTGTCTCTCTCTGCTTCTGTTTCTGTCTTTCTC  400

seq1  TCTGTCTCTTTCTGTCTCTCTGTCTCTCTCTGCTTCTCTGTCTGTCTCTG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCTTTCTGTCTCTCTGTCTCTCTCTGCTTCTCTGTCTGTCTCTG  450

seq1  TCTCTGTTTCTGTCTCTCTGTCCCTCTGTCTGTCTCTGTCTCTGTCTCTG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTTTCTGTCTCTCTGTCCCTCTGTCTGTCTCTGTCTCTGTCTCTG  500

seq1  TCTCTCTCTCTCTCCCTCTCTGTGTGTGTGTCTCCCCACAAAAGAAATCA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCCCTCTCTGTGTGTGTGTCTCCCCACAAAAGAAATCA  550

seq1  AGTATGTCTTATGTTGAAAGATTACTCCTGGAGTGTGGTAGACACACCAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGTCTTATGTTGAAAGATTACTCCTGGAGTGTGGTAGACACACCAG  600

seq1  GTGCCAGTCCATTGAAGAAAGCAGTAATCCCAGCAGCAATCACAGGCAAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAGTCCATTGAAGAAAGCAGTAATCCCAGCAGCAATCACAGGCAAA  650

seq1  TTGCTTCTCTGCGAGGGGCAGAACTTTCTATCCACCTCCCTTCCTCCATT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCTCTGCGAGGGGCAGAACTTTCTATCCACCTCCCTTCCTCCATT  700

seq1  CTGGGATTTTGTCTGGCTCTGTAGGTATTTCTTAATTAGCCACATCAAAT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATTTTGTCTGGCTCTGTAGGTATTTCTTAATTAGCCACATCAAAT  750

seq1  ACTAAGAAACAGGATATATAACTTTTGTCTTCTTTTGACACATTCTACTC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGAAACAGGATATATAACTTTTGTCTTCTTTTGACACATTCTACTC  800

seq1  TAAAGAATTC  802
      ||||||||||
seq2  TAAAGAATTC  810


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