BAC Information

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BAC

Clone NameB6Ng01-214I02
Chromosome19 (Build37)
Map Location 49,264,246 - 49,431,829
singlet/doubletdoublet
Overlap genenone
Upstream geneSorcs3, LOC100042896
Downstream geneLOC629448, Siah1-ps1, EG433251, Sorcs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214I02.bB6Ng01-214I02.g
ACCGA031735GA031736
length1,1271,090
definitionB6Ng01-214I02.b B6Ng01-214I02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,264,246 - 49,265,312)(49,430,751 - 49,431,829)
sequence
gaattctttgtttagctcttagccccattttttaattgggttatttgatt
ttctagaatctaccttcttgagtcctttatatatattgaatattagtccc
ctatctgatttaggattggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattaatggtgtcttttgccttacagaagctttgcaacttta
tgaggtcccttttgttgattctcaatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtacccatatctttgaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttga
tccacttagatttgaccttagtacaaggagataggaatggaccaatttgc
attcttctacatgataaccgccagttgtgccagcaccatttgttgaaaat
gctgtcttttttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctggttcttcaattctattccattgg
caggacacacagtttaaccctgctcttgtatttgtggaacactaagtgaa
gggtgttagcgcatgtctaagctaatcaaagaattcaatctttagcctta
tgtattggcttaagtaaaaatatgctgataagataggagaaaattgttga
taacttctagagatagaataattttattcttttgaatgaatttttttttc
aaacacttgatctttctctgggatttttatcaatcttatgagcaaaggtt
ggagcttggcagaacatcattatggcctaccatggagacttgctgagtca
agtctcctgtgcacctcacctttcccagtaaagaagaaaggttcccagca
gtttaagccaatgtgcatttcttttaatatgtgaaataatgtagggtaat
gtttagagaaaggaggcaatgaataatgatagtaatgtttacaaatatat
aactacatatgtatttctaaccttccaaagactagtcagacctcagctgt
taagaacttatttcccacaataccagaaaaatcctggactaaatattaag
aaagttacacagtgtgttgccttcagt

gaattcaaataatgattattcttggtgttctataaaaccagttccaactt
gtgtggtcccttgaaggaaatgtctgataaaagaggcaaagctatagtgg
ctctagggagcgagcaagctaattgatttacagcagctttaatgcggttt
ctggaggtgacggaacatatgagttatcaaagggaaaatcaagactttta
ttgtccctccacttacactgacatcactgtctgcccccagactacctgga
agcaaagctgtacttccatctctagaggagaaataatgagttaccagaaa
caaagtgaagaataaaatctacccaaacatttatcacctgacttcacccc
atagttttccaaagatgacagttatagccagaaagtatgtctgtttctta
ggagtaatgaatttcaacgtttagtctttatcatcacatgccagtgtatc
tagatggtgaaaaagaccaacaatctgaaagtgtcaaaacctatgtataa
gagaccaactgaagccaaagccccaatccattgtggatgtgaaggacagc
agtgtattcctgaagtgtaataaggagaatcagagtccataagacatttc
ctagatgttttaaagagacctcaaggtccatcccatagatctttcatgaa
tctacaaccctgtccttccagacactgttctgagtaagttccgcagtgca
ctggaaaagaacacagagaacactttctcaaagccttcattctagattga
aacaacgaggctaaagtatgtgtggtagaagccaatacatgaagaatgct
caatagtaccagagtgacaagtacagactttaatcactgatgtgcaaaat
agctcaagcaaataagttgaatttttaaaaattttgtaccggctcacaaa
actgtttctcattaatgcaatcacgtatacccaggtgtttctgaactagg
atttgggctccaatttgtctgatctctgcggcatgcctcctttcagaagg
tattttatttttaaaacctgcatcttggctatacagtttttcatgaatga
atggccaccatggttaatggggtattgcatgtagcatcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_49264246_49265312
seq2: B6Ng01-214I02.b_94_1169

seq1  TCTAGAATCTACCTTCTTGAGTCCTTTATATATATTGAATATTAGTCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAATCTACCTTCTTGAGTCCTTTATATATATTGAATATTAGTCCCC  50

seq1  TATCTGATTTAGGATTGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGATTTAGGATTGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTT  100

seq1  TTTGTCTTATTAATGGTGTCTTTTGCCTTACAGAAGCTTTGCAACTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTATTAATGGTGTCTTTTGCCTTACAGAAGCTTTGCAACTTTAT  150

seq1  GAGGTCCCTTTTGTTGATTCTCAATCTTACAGCACAAGCCATTGCTGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCCCTTTTGTTGATTCTCAATCTTACAGCACAAGCCATTGCTGTTC  200

seq1  TATTCAGGAATTTTTCCCCTGTACCCATATCTTTGAGGCTTTTCCCCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGGAATTTTTCCCCTGTACCCATATCTTTGAGGCTTTTCCCCACT  250

seq1  TTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGAT  300

seq1  CCACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGACCAATTTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGACCAATTTGCA  350

seq1  TTCTTCTACATGATAACCGCCAGTTGTGCCAGCACCATTTGTTGAAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTACATGATAACCGCCAGTTGTGCCAGCACCATTTGTTGAAAATG  400

seq1  CTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTG  450

seq1  ACCATAGGTGTGTGGGTTCATTTCTGGTTCTTCAATTCTATTCCATTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAGGTGTGTGGGTTCATTTCTGGTTCTTCAATTCTATTCCATTGGC  500

seq1  AGGACACACAGTTTAACCCTGCTCTTGTATTTGTGGAACACTAAGTGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACACAGTTTAACCCTGCTCTTGTATTTGTGGAACACTAAGTGAAG  550

seq1  GGTGTTAGCGCATGTCTAAGCTAATCAAAGAATTCAATCTTTAGCCTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTAGCGCATGTCTAAGCTAATCAAAGAATTCAATCTTTAGCCTTAT  600

seq1  GTATTGGCTTAAGTAAAAATATGCTGATAAGATAGGAGAAAATTGTTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGGCTTAAGTAAAAATATGCTGATAAGATAGGAGAAAATTGTTGAT  650

seq1  AACTTCTAGAGATAGAATAATTTTATTCTTTTGAATGAA-TTTTTTTTCA  699
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AACTTCTAGAGATAGAATAATTTTATTCTTTTGAATGAATTTTTTTTTCA  700

seq1  AACACTTGATCTTTCTCTGGGATTTTTATCAATCTTATGAGCAAAGGTTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTGATCTTTCTCTGGGATTTTTATCAATCTTATGAGCAAAGGTTG  750

seq1  GAGCTTGGCAGAACATCATTATGGCCTACCATGGAGACTTGCTGAGTCAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTGGCAGAACATCATTATGGCCTACCATGGAGACTTGCTGAGTCAA  800

seq1  GTCTCCTGTGCACCTCACCTTTCCCAGTAAAGAAGAAAGGTTCCCAGCAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTGTGCACCTCACCTTTCCCAGTAAAGAAGAAAGGTTCCCAGCAG  850

seq1  TTTAAGCCAATGTGCATTTCTTTTAATATGTGAAATAAATGTAGGGTAAT  899
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTTAAGCCAATGTGCATTTCTTTTAATATGTGAAAT-AATGTAGGGTAAT  899

seq1  GTTTAGAGAAAGGAGGCAATGAATAATGATAGTAAATGTTTACAAATATA  949
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTTTAGAGAAAGGAGGCAATGAATAATGATAGT-AATGTTTACAAATATA  948

seq1  TAACTACATATGTATTCTAAACTTTCAAAAGACTAGTCAGACCTCAGCTG  999
      ||||||||||||||||   ||| ||| |||||||||||||||||||||||
seq2  TAACTACATATGTATTTCTAACCTTCCAAAGACTAGTCAGACCTCAGCTG  998

seq1  -TAAGAACT--ATTCCCACAATAACCAGAAAATTC--TGACTAAATA-TA  1043
       ||||||||   |||||||||| ||||||||| ||   ||||||||| ||
seq2  TTAAGAACTTATTTCCCACAAT-ACCAGAAAAATCCTGGACTAAATATTA  1047

seq1  AGAAAGTAACA----GTGTTG-CTTCAGT  1067
      ||||||| |||    |||||| |||||||
seq2  AGAAAGTTACACAGTGTGTTGCCTTCAGT  1076


seq1: chr19_49430751_49431829
seq2: B6Ng01-214I02.g_65_1154 (reverse)

seq1  TTGATGCTACATCCAAATAACCCCAT--AACAT-GTGGCCA-TCA-TCAT  45
      |||||||||||| |||   |||||||  | ||| ||||||| ||| ||||
seq2  TTGATGCTACATGCAA--TACCCCATTAACCATGGTGGCCATTCATTCAT  48

seq1  GAAAAACTGTATAGCC-AGATGCAGGTTTTAAAA--TAGATA-CTTCTGA  91
      |||||||||||||||| |||||||||||||||||   | ||| |||||||
seq2  GAAAAACTGTATAGCCAAGATGCAGGTTTTAAAAATAAAATACCTTCTGA  98

seq1  AAGGAGGCATGCCGCAGAGATCAGAC-AATTGGAG-CCAAATCCTAGTTC  139
      |||||||||||||||||||||||||| |||||||| ||||||||||||||
seq2  AAGGAGGCATGCCGCAGAGATCAGACAAATTGGAGCCCAAATCCTAGTTC  148

seq1  AGAAACACCTGGGTATACGTGATTGCATTAATGAG-AACAG-TTTGTGAG  187
      ||||||||||||||||||||||||||||||||||| ||||| ||||||||
seq2  AGAAACACCTGGGTATACGTGATTGCATTAATGAGAAACAGTTTTGTGAG  198

seq1  CCCGGTACAAAATTTTTAAAAATTCAACTTATTTGCCTGAGCTATTTTGC  237
       ||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  -CCGGTACAAAATTTTTAAAAATTCAACTTATTTGCTTGAGCTATTTTGC  247

seq1  ACATCAGTGATT-AAGTCTGTACTTGTCACTCTGGTACTATTGAGCATTC  286
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACATCAGTGATTAAAGTCTGTACTTGTCACTCTGGTACTATTGAGCATTC  297

seq1  TTCATGTATTGGCTTCTACCACACATACTTTAGCCTCGTTGTTTCAATCT  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTATTGGCTTCTACCACACATACTTTAGCCTCGTTGTTTCAATCT  347

seq1  AGAATGAAGGCTTTGAGAAAGTGTTCTCTGTGTTCTTTTCCAGTGCACTG  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAAGGCTTTGAGAAAGTGTTCTCTGTGTTCTTTTCCAGTGCACTG  397

seq1  CGGAACTTACTCAGAACAGTGTCTGGAAGGACAGGGTTGTAGATTCATGA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAACTTACTCAGAACAGTGTCTGGAAGGACAGGGTTGTAGATTCATGA  447

seq1  AAGATCTATGGGATGGACCTTGAGGTCTCTTTAAAACATCTAGGAAATGT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTATGGGATGGACCTTGAGGTCTCTTTAAAACATCTAGGAAATGT  497

seq1  CTTATGGACTCTGATTCTCCTTATTACACTTCAGGAATACACTGCTGTCC  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGGACTCTGATTCTCCTTATTACACTTCAGGAATACACTGCTGTCC  547

seq1  TTCACATCCACAATGGATTGGGGCTTTGGCTTCAGTTGGTCTCTTATACA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATCCACAATGGATTGGGGCTTTGGCTTCAGTTGGTCTCTTATACA  597

seq1  TAGGTTTTGACACTTTCAGATTGTTGGTCTTTTTCACCATCTAGATACAC  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTTGACACTTTCAGATTGTTGGTCTTTTTCACCATCTAGATACAC  647

seq1  TGGCATGTGATGATAAAGACTAAACGTTGAAATTCATTACTCCTAAGAAA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGTGATGATAAAGACTAAACGTTGAAATTCATTACTCCTAAGAAA  697

seq1  CAGACATACTTTCTGGCTATAACTGTCATCTTTGGAAAACTATGGGGTGA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATACTTTCTGGCTATAACTGTCATCTTTGGAAAACTATGGGGTGA  747

seq1  AGTCAGGTGATAAATGTTTGGGTAGATTTTATTCTTCACTTTGTTTCTGG  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGTGATAAATGTTTGGGTAGATTTTATTCTTCACTTTGTTTCTGG  797

seq1  TAACTCATTATTTCTCCTCTAGAGATGGAAGTACAGCTTTGCTTCCAGGT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCATTATTTCTCCTCTAGAGATGGAAGTACAGCTTTGCTTCCAGGT  847

seq1  AGTCTGGGGGCAGACAGTGATGTCAGTGTAAGTGGAGGGACAATAAAAGT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGGGGCAGACAGTGATGTCAGTGTAAGTGGAGGGACAATAAAAGT  897

seq1  CTTGATTTTCCCTTTGATAACTCATATGTTCCGTCACCTCCAGAAACCGC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTTTCCCTTTGATAACTCATATGTTCCGTCACCTCCAGAAACCGC  947

seq1  ATTAAAGCTGCTGTAAATCAATTAGCTTGCTCGCTCCCTAGAGCCACTAT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGCTGCTGTAAATCAATTAGCTTGCTCGCTCCCTAGAGCCACTAT  997

seq1  AGCTTTGCCTCTTTTATCAGACATTTCCTTCAAGGGACCACACAAGTTGG  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGCCTCTTTTATCAGACATTTCCTTCAAGGGACCACACAAGTTGG  1047

seq1  AACTGGTTTTATAGAACACCAAGAATAATCATTATTTGAATTC  1079
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGTTTTATAGAACACCAAGAATAATCATTATTTGAATTC  1090


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