BAC Information

Click to search

BAC

Clone NameB6Ng01-214M17
Chromosome19 (Build37)
Map Location 45,829,471 - 45,995,682
singlet/doubletdoublet
Overlap geneMgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939
Upstream genePax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1, Btrc, EG627889, Poll, 5330431N19Rik, Fbxw4, Fgf8, Npm3
Downstream gene4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu, Trim8, Arl3, Sfxn2, D19Wsu162e, Cyp17a1, EG629359, 2010012O05Rik, As3mt, Cnnm2, Nt5c2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214M17.bB6Ng01-214M17.g
ACCGA031947GA031948
length1,151314
definitionB6Ng01-214M17.b B6Ng01-214M17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,829,471 - 45,830,625)(45,995,369 - 45,995,682)
sequence
gaattcaaggctagcctcgtatacacagtgaattccagatcacctacaga
taaacagtaaaaccctagctacaaaaaatgaaagaacacacagacataga
caaacaaccccccaaacacaccaagttaccaaccaataaggggtcgatgc
cagcagttatcaacacttactgcacagttatgaggcctgtacttcaggac
cccagcacctacagggaagatgccacacgcctctaaccctgctttggaga
ggctagatacagggctgctgaggcttgctggcttccaactatctaaaaga
ctgtgaactttaggttcaaccttgcctcagaatatgcagagtgacagagg
atactctctgaatgcacagttcaggcctccacgtatgcagagagttatac
atgtgtacactcatacagacacatacaaatataaattacttttaaaaatg
gcttgtttaacccgtaatggttcttcatgcctgcatcccccagattcctg
taggtttaaagacagcctggtcggccatcatatgttccatgaatgctggg
ttactcagggagattccatctcagaagacaagaaagccaatctaaaggca
gcaacagaacacgtgcttgcatgtgtgaagctgtagattccatcctcagc
aatatacagacttgaaaataaaaatctaagagccaggatgaggatataca
cctgtaatcccagcacctaggaggcagaggcatgtgactctctgtgagca
caatgccagttactcccaggacaggcagcactacatagtgagaccctgtc
ttgaaaaatccagaatgaaaaaacaaacttaaaaaaaaagaaagaaaatc
tgagtcagttgtccagaggacagggagctcctgagggcgtaagggtcagg
tcagccagggcaagacaacataataaacccatttccaagaaaagagacaa
aatattcatggtgtactctgaactaggcactagaatgaagaatgttagta
ggaaagctggtggatagtttaagaatttggttattgacatgcaccagcag
cagtttctaagcttgaaaacgttggaaatgaacaagggacggaattggac
tctataactgaacttacaatagaaattcaaaaaatacatataaagtaact
c
ctagccctggagggagaggcaagtggatctctgtgagttctaggccagcc
tgggatacagagtgaattctaggccagccagtgccatgtagtgatacctt
gtcttaaaaaacaaaatcaaccaaacatgtcttgagtctcaaatattctg
gctttgtgtaacagcaaggaggaaatcagtgcaaacttggactctcactc
ccttccatttggtagcagcatatggactatagggagcctctgtgtttcct
caagatgagtaatctcagaaggaatggcattaggcgggtggggatggatg
ggggcggagagatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_45829471_45830625
seq2: B6Ng01-214M17.b_50_1200

seq1  GAATTCAAGGCTAGCCTCGTATACACAGTGAATTCCAGATCACCTACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCTAGCCTCGTATACACAGTGAATTCCAGATCACCTACAGA  50

seq1  TAAACAGTAAAACCCTAGCTACAAAAAATGAAAGAACACACAGACATAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGTAAAACCCTAGCTACAAAAAATGAAAGAACACACAGACATAGA  100

seq1  CAAACAACCCCCCAAACACACCAAGTTACCAACCAATAAGGGGTCGATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAACCCCCCAAACACACCAAGTTACCAACCAATAAGGGGTCGATGC  150

seq1  CAGCAGTTATCAACACTTACTGCACAGTTATGAGGCCTGTACTTCAGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTTATCAACACTTACTGCACAGTTATGAGGCCTGTACTTCAGGAC  200

seq1  CCCAGCACCTACAGGGAAGATGCCACACGCCTCTAACCCTGCTTTGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACCTACAGGGAAGATGCCACACGCCTCTAACCCTGCTTTGGAGA  250

seq1  GGCTAGATACAGGGCTGCTGAGGCTTGCTGGCTTCCAACTATCTAAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGATACAGGGCTGCTGAGGCTTGCTGGCTTCCAACTATCTAAAAGA  300

seq1  CTGTGAACTTTAGGTTCAACCTTGCCTCAGAATATGCAGAGTGACAGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAACTTTAGGTTCAACCTTGCCTCAGAATATGCAGAGTGACAGAGG  350

seq1  ATACTCTCTGAATGCACAGTTCAGGCCTCCACGTATGCAGAGAGTTATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTCTGAATGCACAGTTCAGGCCTCCACGTATGCAGAGAGTTATAC  400

seq1  ATGTGTACACTCATACAGACACATACAAATATAAATTACTTTTAAAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTACACTCATACAGACACATACAAATATAAATTACTTTTAAAAATG  450

seq1  GCTTGTTTAACCCGTAATGGTTCTTCATGCCTGCATCCCCCAGATTCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTTAACCCGTAATGGTTCTTCATGCCTGCATCCCCCAGATTCCTG  500

seq1  TAGGTTTAAAGACAGCCTGGTCGGCCATCATATGTTCCATGAATGCTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTAAAGACAGCCTGGTCGGCCATCATATGTTCCATGAATGCTGGG  550

seq1  TTACTCAGGGAGATTCCATCTCAGAAGACAAGAAAGCCAATCTAAAGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCAGGGAGATTCCATCTCAGAAGACAAGAAAGCCAATCTAAAGGCA  600

seq1  GCAACAGAACACGTGCTTGCATGTGTGAAGCTGTAGATTCCATCCTCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAGAACACGTGCTTGCATGTGTGAAGCTGTAGATTCCATCCTCAGC  650

seq1  AATATACAGACTTGAAAATAAAAATCTAAGAGCCAGGATGAGGATATACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACAGACTTGAAAATAAAAATCTAAGAGCCAGGATGAGGATATACA  700

seq1  CCTGTAATCCCAGCACCTAGGAGGCAGAGGCATGTGACTCTCTGTGAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAATCCCAGCACCTAGGAGGCAGAGGCATGTGACTCTCTGTGAGCA  750

seq1  CAATGCCAGTTACTCCCAGGACAGGCAGCACTACATAGTGAGACCCTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCCAGTTACTCCCAGGACAGGCAGCACTACATAGTGAGACCCTGTC  800

seq1  TTGAAAAATCCAGAATGAAAAAACAAACTTAAAAAAAAAGAAAGAAAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAATCCAGAATGAAAAAACAAACTTAAAAAAAAAGAAAGAAAATC  850

seq1  TGAGTCAGTTGTCCAGAGGACAGGGAGCTCCTGAGGGCGTAAGGGTCAGG  900
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGAGTCAGTTGTCCAGAGGACAGGGAGCTCCTGAGGGCGTAAGGGTCA-G  899

seq1  GTCAGCCAGGGCAAGACAACATAATAAACCCATTTCCAAGAAAAGAGAC-  949
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTCAGCCAGGGCAAGACAACATAATAAACCCATTTCCAAGAAAAGAGACA  949

seq1  AAATATTCATGGTGTACTCTGAACTAGGCACTAGAATGAAGAATGTTAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTCATGGTGTACTCTGAACTAGGCACTAGAATGAAGAATGTTAGT  999

seq1  AGGAAAGCTGGTGGATAGTTT-AGAATTTGGTTATTGACAATGCACCAGC  1048
      ||||||||||||||||||||| ||||||||||||||||| ||||||||||
seq2  AGGAAAGCTGGTGGATAGTTTAAGAATTTGGTTATTGAC-ATGCACCAGC  1048

seq1  AGCAGTTTCTTAAGCTTGAGAAACGTTGGAAATGAACAAGGGACGGATTG  1098
      ||||||||| ||||||||| ||||||||||||||||||||||||||| | 
seq2  AGCAGTTTC-TAAGCTTGA-AAACGTTGGAAATGAACAAGGGACGGAATT  1096

seq1  GAACTCTAT-ACTGAAACTTTACATAGAAATCAAAAAATTACATTATTAA  1147
      | ||||||| |||| |||||   ||||||||  ||||| |||||   |||
seq2  GGACTCTATAACTG-AACTTACAATAGAAATTCAAAAAATACAT--ATAA  1143

seq1  AGTAACTC  1155
      ||||||||
seq2  AGTAACTC  1151

seq1: chr19_45995369_45995682
seq2: B6Ng01-214M17.g_70_383 (reverse)

seq1  CATCTCTCCGCCCCCATCCATCCCCACCCGCCTAATGCCATTCCTTCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTCCGCCCCCATCCATCCCCACCCGCCTAATGCCATTCCTTCTGA  50

seq1  GATTACTCATCTTGAGGAAACACAGAGGCTCCCTATAGTCCATATGCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACTCATCTTGAGGAAACACAGAGGCTCCCTATAGTCCATATGCTGC  100

seq1  TACCAAATGGAAGGGAGTGAGAGTCCAAGTTTGCACTGATTTCCTCCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAATGGAAGGGAGTGAGAGTCCAAGTTTGCACTGATTTCCTCCTTG  150

seq1  CTGTTACACAAAGCCAGAATATTTGAGACTCAAGACATGTTTGGTTGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTACACAAAGCCAGAATATTTGAGACTCAAGACATGTTTGGTTGATT  200

seq1  TTGTTTTTTAAGACAAGGTATCACTACATGGCACTGGCTGGCCTAGAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTTAAGACAAGGTATCACTACATGGCACTGGCTGGCCTAGAATT  250

seq1  CACTCTGTATCCCAGGCTGGCCTAGAACTCACAGAGATCCACTTGCCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGTATCCCAGGCTGGCCTAGAACTCACAGAGATCCACTTGCCTCT  300

seq1  CCCTCCAGGGCTAG  314
      ||||||||||||||
seq2  CCCTCCAGGGCTAG  314