BAC Information

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BAC

Clone NameB6Ng01-215E09
Chromosome19 (Build37)
Map Location 27,002,215 - 27,003,419
singlet/doubletsinglet
Overlap genenone
Upstream gene1700048O14Rik, LOC100041846, LOC100041857, Smarca2, Gm815
Downstream geneLOC100042576, Vldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868, LOC100042612, Rfx3, LOC666997
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215E09.bB6Ng01-215E09.g
ACCGA032288GA032289
length1,1881,119
definitionB6Ng01-215E09.b B6Ng01-215E09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcataatataagccaagctgcctttgaacttacggccatcctcctg
ccttgggctcctaggtgctaggatcataggcacattccactgcttgccta
aacaccattttaaataacttaatgacactattactgttgttttaaccaat
ttgaggacaatgtctttccagtatctattcacttctgaaggtcaaaaagt
attactttactttgttagtgaagaaataattattagactctccttcttat
aaatttttgccttttattgccatttacaaactatgataaaatcaataccc
atcacatatttatagtttgacaggcttcaatcctactgcagaattggagt
tgggtggtcagagggagagtaggcattttaattgccagcagacttatcaa
tctttcctacccagcaacagtgtctgagaatgccagtttctcaagtcccc
agcagcactatacattgtcatgcttttaagttgaaagagatagctcatta
tacttttaatttgaatttctgtaattaccagtaaggctgaccatcttttc
ctacatttattgaagtttgcttttcttctgcagattgcgtatccatttac
aacttcatttctctactgggatattcgtctttcccatatcaatttgtagg
agttctttgtggattctagatgtaaatctggatttattgtacatattgga
aatattctgttagtcatctacctttttgactttgcagtagttctaccatc
ccaatgctagggttttcatgaggtcacatctgtcaaactctttaatggct
gaagggatacttagcatgacttccgaatgctagagaactatactgagata
cttgcaagacagtgtctggatactctcttgaactttgagatgttgagtac
actggcaacgtagagtgcttttccttcctgtgcaataaccaacacagaaa
tctttgatgacttcaaacttgtagagagcttgcctggaaacatccattct
tcaacagacacttactgcatctcctgttaaccaattcaccgatgctctct
ccctcatatcatcaacccaatgaagacagactagttctctgagaccctgc
tctatcttagatgctaattcaacccaaggttgtttatctgtcactgatac
accagcccaaactggattcccaactcatcagttattga
gaattctttgtttagctctgagccccatttttaatagggttatttgattt
tctggagtccatcttcttgagttctttatatatatattggatattattcc
cctacctgatttaggataggtaaatatcctttcccaatctgctggtggcc
tttttgttttattgacagtatcttttgccttatagaaacgttgcaatttt
atgaagtcccatttgtcgattctcaatcttacagcacgagcttcgggaat
ttttccctgtgcccatatcttcaaggcttttccccactttcttctctata
agtttcagtatctctggttttatgtggaattccttgatccacttagattt
gaccttagtacaaggagataagaatggatcaattcacattcttctacatg
ataactgccagttgtgcccgcaccatttgttgaaaatgctgtcttttttc
cactggatggttttagctcccttgtcaaagatcaagtgaccatagttgtg
tgggttcatttctgggtcttcaattctattccattggtctacttgtctgt
tgctataccagtaccatgtagtttttatcacaattgctctgtagtacagc
ttttggtcaggcatggtgattcccccagaggttcttttatccttgagaag
agtttttgctatcctaggttttttgttattccggatgaatttgcagattg
ccctttccaattctttgaagtattgagttggaattttgatggggattgca
ttgaatctgtagattgcttttggcaagatagccatttttactatattgat
cctgccaatccatgagcatgggagatttttccatcttctgagatcttctc
taatttcttattcagagacttgaagttctttatcatagagatcttcactt
ccttagagtcaacgccaaggttattttttattatttgtgactattgagaa
ggtgttgtttccctaaatttctttctcagccctgttacccttttgtgtta
gagaaaggcccattgtatttgttggagttaattttatatctcacgctact
cattgagctgttatcagaattaggagttccctggtggaattttaaggcgt
cactttaattagactctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_27002215_27003419
seq2: B6Ng01-215E09.b_44_1231 (reverse)

seq1  TCAATAAACCCTGATGAGAGGTTGTGGGAATCTCTGTTTGTGGCTGGTGT  50
      |||||||   ||||||||      |||||||| | ||||| |||||||||
seq2  TCAATAA---CTGATGAG-----TTGGGAATC-CAGTTTG-GGCTGGTGT  40

seq1  ATCAGTG-CAGATAAAACAACCTGGGTTTGAATTTGGCATCTAGAGTGAG  99
      ||||||| ||||| ||||||||| || ||||| || ||||||| ||  ||
seq2  ATCAGTGACAGAT-AAACAACCTTGGGTTGAA-TTAGCATCTA-AGATAG  87

seq1  GAGGCAGGGTCTCAGAG-ACTAGGTCCTTGTC-TCATTGGGTTGATGATA  147
         |||||||||||||| |||| |||  |||| |||||||||||||||||
seq2  --AGCAGGGTCTCAGAGAACTA-GTC--TGTCTTCATTGGGTTGATGATA  132

seq1  TGAAGGGAGAGAGCATCGGGTGAATTGGGTTACAGGAGATGCAGTAGGTG  197
      || |||||||||||||| |||||||||| | ||||||||||||||| |||
seq2  TG-AGGGAGAGAGCATC-GGTGAATTGGTTAACAGGAGATGCAGTAAGTG  180

seq1  TCTGTTGAAGAATGGATGTTTCCAGGCAAGCTCTCTACAAGTTTTGAAGT  247
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCTGTTGAAGAATGGATGTTTCCAGGCAAGCTCTCTACAAG-TTTGAAGT  229

seq1  CATCAAAGATTTCTGTGTTGGTTATTGCACAGGAAGGAAAAGCACTCTAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAAGATTTCTGTGTTGGTTATTGCACAGGAAGGAAAAGCACTCTAC  279

seq1  GTTGCCAGTGTACTCAACATCTC-AAGTTCAAGAGAGTATCCAGACACTG  346
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTTGCCAGTGTACTCAACATCTCAAAGTTCAAGAGAGTATCCAGACACTG  329

seq1  TCTTGCAAGTATCTCAGTATAGTTCTCTAGCATTCGGAAGTCATGCTAAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCAAGTATCTCAGTATAGTTCTCTAGCATTCGGAAGTCATGCTAAG  379

seq1  TATCCCTTCAGCCATTAAAGAGTTTGACAGATGTGACCTCATGAAAACCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCTTCAGCCATTAAAGAGTTTGACAGATGTGACCTCATGAAAACCC  429

seq1  TAGCATTGGGATGGTAGAACTACTGCAAAGTCAAAAAGGTAGATGACTAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTGGGATGGTAGAACTACTGCAAAGTCAAAAAGGTAGATGACTAA  479

seq1  CAGAATATTTCCAATATGTACAATAAATCCAGATTTACATCTAGAATCCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATATTTCCAATATGTACAATAAATCCAGATTTACATCTAGAATCCA  529

seq1  CAAAGAACTCCTACAAATTGATATGGGAAAGACGAATATCCCAGTAGAGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAACTCCTACAAATTGATATGGGAAAGACGAATATCCCAGTAGAGA  579

seq1  AATGAAGTTGTAAATGGATACGCAATCTGCAGAAGAAAAGCAAACTTCAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGTTGTAAATGGATACGCAATCTGCAGAAGAAAAGCAAACTTCAA  629

seq1  TAAATGTAGGAAAAGATGGTCAGCCTTACTGGTAATTACAGAAATTCAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTAGGAAAAGATGGTCAGCCTTACTGGTAATTACAGAAATTCAAA  679

seq1  TTAAAAGTATAATGAGCTATCTCTTTCAACTTAAAAGCATGACAATGTAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGTATAATGAGCTATCTCTTTCAACTTAAAAGCATGACAATGTAT  729

seq1  AGTGCTGCTGGGGACTTGAGAAACTGGCATTCTCAGACACTGTTGCTGGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGCTGGGGACTTGAGAAACTGGCATTCTCAGACACTGTTGCTGGG  779

seq1  TAGGAAAGATTGATAAGTCTGCTGGCAATTAAAATGCCTACTCTCCCTCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAAGATTGATAAGTCTGCTGGCAATTAAAATGCCTACTCTCCCTCT  829

seq1  GACCACCCAACTCCAATTCTGCAGTAGGATTGAAGCCTGTCAAACTATAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACCCAACTCCAATTCTGCAGTAGGATTGAAGCCTGTCAAACTATAA  879

seq1  ATATGTGATGGGTATTGATTTTATCATAGTTTGTAAATGGCAATAAAAGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGATGGGTATTGATTTTATCATAGTTTGTAAATGGCAATAAAAGG  929

seq1  CAAAAATTTATAAGAAGGAGAGTCTAATAATTATTTCTTCACTAACAAAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATTTATAAGAAGGAGAGTCTAATAATTATTTCTTCACTAACAAAG  979

seq1  TAAAGTAATACTTTTTGACCTTCAGAAGTGAATAGATACTGGAAAGACAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTAATACTTTTTGACCTTCAGAAGTGAATAGATACTGGAAAGACAT  1029

seq1  TGTCCTCAAATTGGTTAAAACAACAGTAATAGTGTCATTAAGTTATTTAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCAAATTGGTTAAAACAACAGTAATAGTGTCATTAAGTTATTTAA  1079

seq1  AATGGTGTTTAGGCAAGCAGTGGAATGTGCCTATGATCCTAGCACCTAGG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTGTTTAGGCAAGCAGTGGAATGTGCCTATGATCCTAGCACCTAGG  1129

seq1  AGCCCAAGGCAGGAGGATGGCCGTAAGTTCAAAGGCAGCTTGGCTTATAT  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAAGGCAGGAGGATGGCCGTAAGTTCAAAGGCAGCTTGGCTTATAT  1179

seq1  TATGAATTC  1205
      |||||||||
seq2  TATGAATTC  1188