BAC Information

Click to search

BAC

Clone NameB6Ng01-217J14
Chromosome19 (Build37)
Map Location 29,553,931 - 29,683,048
singlet/doubletdoublet
Overlap geneC030046E11Rik
Upstream geneGlis3, EG434460, EG627788, Slc1a1, LOC545262, 4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3, Rcl1, LOC433238, Jak2, Insl6, Rln1, 5033414D02Rik, Cd274, Pdcd1lg2
Downstream geneD19Wsu12e, Mlana, 9930021J03Rik, Ranbp6, Il33, Trpd52l3, Uhrf2, Gldc, EG625917, Mbl2, LOC100042088, LOC668020, EG546723, Dkk1, Prkg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217J14.bB6Ng01-217J14.g
ACCGA033962GA033963
length5071,079
definitionB6Ng01-217J14.b B6Ng01-217J14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,682,536 - 29,683,048)(29,553,931 - 29,554,996)
sequence
ttcaaacaggtttgcttacatatgcagaccatctctacagagccactgaa
aagttcatccgaaattcagacggcaccacaggagtcctacaacagccgga
gcagccttgagataaatatagacagtacttgaacctccacagcttcctat
gaagcaagaatcacccagaaggaagactgcacatttatagtgtgtccata
aaaaacccgcattatagtgtttttgacagttcagttgggaaaaaaaaatc
ttttcataaattgtactcaaaacattgaatatccatccatatgtaaaaga
gtaagagagtctctcaaatatacaaaaattaactcaaaatgtgtctaaat
gtttaagctacaactataaagcacaggcataaatatttatagccttggtt
aaatggtggtttcctccttgtgcacaagcaatcaacacgagaagctgtgc
tgcagcagcacagtggcccacgcctttaaccccagcacttagggtggggg
tggggag
gaattctatacaactgttgtccaaggctaagattaggagaaatgggaaca
actgttgtctacaaaagacagctgtgagctactgacatgtctccaccctg
gcctactgcaggcagtcccttatttcaggtggcaggtcccctggagggat
gtaactactccttctcaggttcccaggcaccatcctttttcacaaggagc
tgccacaggcttctgagatgtctccatccctttctgcccctttccctctg
aaagagacgggaatcctggagtttatgagaaatggagacacccctttcga
ggccactgctcatatgtggttgtatcagagtttcaagcaaaagaaagtta
gtgtctgcagatgggaaggcgggacttccttcattatgaaggggagatca
gggacagactcaggacaagtgtgctcaaacattcactcctagcctgagtc
caacgccttccaagtttctgttctccgtgcatctgccagctgcggaatgc
ttggtttgcttctgaatccttagtaatatttagttattcctgcaaccaga
aagaacacgatatattttgaacgcctgcttagaaccccctactggtgctc
tgcctacggttttaggggaaatctctgagcttgctgctttcttcctgcac
acacactaatacagaagcagccacatcacctcgattcctttatgacctta
tctttactagaacaatgctccaatataacagctactcggtttccaaaaat
tctacttctccatcaagcctccctcgggtctcaggaagctacgaggaaga
ggaggcaggaaaaccgtaaatcggtggggatggacgacaccaaggaaata
agacctttctagataagagagcagaactgatgcttcgtagaagctcaaca
gacaccgtggcagcacgcacaggaacttgcaccagtcccagttactgaga
ggggaactggacacgaaggcccaatccctcaacgcagaaattgttcttca
attgaacagccattcacagaagaaaattcagttttcttcagtggagtcct
acttggggtgtacaccacaacacttaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_29682536_29683048
seq2: B6Ng01-217J14.b_48_560 (reverse)

seq1  CTCCCCACCCCCACCCTAAGTGCTGGGGTTAAAGGCGTGGGCCACTGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCACCCCCACCCTAAGTGCTGGGGTTAAAGGCGTGGGCCACTGTGC  50

seq1  TGCTGCAGCACAGCTTCTCGTGTTGATTGCTTGTGCACAAGGAGGAAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCAGCACAGCTTCTCGTGTTGATTGCTTGTGCACAAGGAGGAAACC  100

seq1  ACCATTTAACCAAGGCTATAAATATTTATGCCTGTGCTTTATAGTTGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTAACCAAGGCTATAAATATTTATGCCTGTGCTTTATAGTTGTAG  150

seq1  CTTAAACATTTAGACACATTTTGAGTTAATTTTTGTATATTTGAGAGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAACATTTAGACACATTTTGAGTTAATTTTTGTATATTTGAGAGACT  200

seq1  CTCTTACTCTTTTACATATGGATGGATATTCAATGTTTTGAGTACAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTACTCTTTTACATATGGATGGATATTCAATGTTTTGAGTACAATTT  250

seq1  ATGAAAAGATTTTTTTTTCCCAACTGAACTGTCAAAAACACTATAATGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAGATTTTTTTTTCCCAACTGAACTGTCAAAAACACTATAATGCG  300

seq1  GGTTTTTTATGGACACACTATAAATGTGCAGTCTTCCTTCTGGGTGATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTTATGGACACACTATAAATGTGCAGTCTTCCTTCTGGGTGATTC  350

seq1  TTGCTTCATAGGAAGCTGTGGAGGTTCAAGTACTGTCTATATTTATCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCATAGGAAGCTGTGGAGGTTCAAGTACTGTCTATATTTATCTCA  400

seq1  AGGCTGCTCCGGCTGTTGTAGGACTCCTGTGGTGCCGTCTGAATTTCGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCTCCGGCTGTTGTAGGACTCCTGTGGTGCCGTCTGAATTTCGGA  450

seq1  TGAACTTTTCAGTGGCTCTGTAGAGATGGTCTGCATATGTAAGCAAACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTTTCAGTGGCTCTGTAGAGATGGTCTGCATATGTAAGCAAACCT  500

seq1  GTTTGAAGAATTC  513
      |||||||||||||
seq2  GTTTGAAGAATTC  513

seq1: chr19_29553931_29554996
seq2: B6Ng01-217J14.g_63_1141

seq1  GAATTCTATACAACTGTTGTCCAAGGCTAAGATTAGGAGAAATGGGAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATACAACTGTTGTCCAAGGCTAAGATTAGGAGAAATGGGAACA  50

seq1  ACTGTTGTCTACAAAAGACAGCTGTGAGCTACTGACATGTCTCCACCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTGTCTACAAAAGACAGCTGTGAGCTACTGACATGTCTCCACCCTG  100

seq1  GCCTACTGCAGGCAGTCCCTTATTTCAGGTGGCAGGTCCCCTGGAGGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACTGCAGGCAGTCCCTTATTTCAGGTGGCAGGTCCCCTGGAGGGAT  150

seq1  GTAACTACTCCTTCTCAGGTTCCCAGGCACCATCCTTTTTCACAAGGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTACTCCTTCTCAGGTTCCCAGGCACCATCCTTTTTCACAAGGAGC  200

seq1  TGCCACAGGCTTCTGAGATGTCTCCATCCCTTTCTGCCCCTTTCCCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACAGGCTTCTGAGATGTCTCCATCCCTTTCTGCCCCTTTCCCTCTG  250

seq1  AAAGAGACGGGAATCCTGGAGTTTATGAGAAATGGAGACACCCCTTTCGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGACGGGAATCCTGGAGTTTATGAGAAATGGAGACACCCCTTTCGA  300

seq1  GGCCACTGCTCATATGTGGTTGTATCAGAGTTTCAAGCAAAAGAAAGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACTGCTCATATGTGGTTGTATCAGAGTTTCAAGCAAAAGAAAGTTA  350

seq1  GTGTCTGCAGATGGGAAGGCGGGACTTCCTTCATTATGAAGGGGAGATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGCAGATGGGAAGGCGGGACTTCCTTCATTATGAAGGGGAGATCA  400

seq1  GGGACAGACTCAGGACAAGTGTGCTCAAACATTCACTCCTAGCCTGAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGACTCAGGACAAGTGTGCTCAAACATTCACTCCTAGCCTGAGTC  450

seq1  CAACGCCTTCCAAGTTTCTGTTCTCCGTGCATCTGCCAGCTGCGGAATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGCCTTCCAAGTTTCTGTTCTCCGTGCATCTGCCAGCTGCGGAATGC  500

seq1  TTGGTTTGCTTCTGAATCCTTAGTAATATTTAGTTATTCCTGCAACCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTGCTTCTGAATCCTTAGTAATATTTAGTTATTCCTGCAACCAGA  550

seq1  AAGAACACGATATATTTTGAACGCCTGCTTAGAACCCCCTACTGGTGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACACGATATATTTTGAACGCCTGCTTAGAACCCCCTACTGGTGCTC  600

seq1  TGCCTACGGTTTTAGGGGAAATCTCTGAGCTTGCTGCTTTCTTCCTGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTACGGTTTTAGGGGAAATCTCTGAGCTTGCTGCTTTCTTCCTGCAC  650

seq1  ACACACTAATACAGAAGCAGCCACATCACCTCGATTCCTTTATGACCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTAATACAGAAGCAGCCACATCACCTCGATTCCTTTATGACCTTA  700

seq1  TCTTTACTAGAACAATGCTCCAATATAACAGCTACTCGGTTTCCAAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACTAGAACAATGCTCCAATATAACAGCTACTCGGTTTCCAAAAAT  750

seq1  TCTACTTCTCCATCAAGCCTCCCTCGGGTCTCAGGAAGCTACGAGGAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTCTCCATCAAGCCTCCCTCGGGTCTCAGGAAGCTACGAGGAAGA  800

seq1  GGAGGCAGGAAAACCGTAAATCGGTGGGGATGGACGACACCAAGGAAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGGAAAACCGTAAATCGGTGGGGATGGACGACACCAAGGAAATA  850

seq1  AGACC-TTCTAGATAAGAGAGCAGAACTGATGC-TCGTAGAAGCTC-ACA  897
      ||||| ||||||||||||||||||||||||||| |||||||||||| |||
seq2  AGACCTTTCTAGATAAGAGAGCAGAACTGATGCTTCGTAGAAGCTCAACA  900

seq1  GACACCGTGGCAGCACGCACAGG-ACCTGCA-CAGTCCCAG-TACTGAGA  944
      ||||||||||||||||||||||| || |||| ||||||||| ||||||||
seq2  GACACCGTGGCAGCACGCACAGGAACTTGCACCAGTCCCAGTTACTGAGA  950

seq1  GGGGAACTGGACACG-AGGCCC-ATCCCTCAACGCAGAAA-TGTTCTCCA  991
      ||||||||||||||| |||||| ||||||||||||||||| |||||| ||
seq2  GGGGAACTGGACACGAAGGCCCAATCCCTCAACGCAGAAATTGTTCTTCA  1000

seq1  A-TGAACAGCCATTCACAGAAGAAAAATCAGTTTTCTCCAGTGGAGTCTC  1040
      | |||||||||||||||||||||||| |||||||||| ||||||||||  
seq2  ATTGAACAGCCATTCACAGAAGAAAATTCAGTTTTCTTCAGTGGAGTCCT  1050

seq1  ACT--GGGTGTACA-CACAACACTTAAGG  1066
      |||  ||||||||| ||||||||||||||
seq2  ACTTGGGGTGTACACCACAACACTTAAGG  1079