BAC Information

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BAC

Clone NameB6Ng01-217M07
Chromosome19 (Build37)
Map Location 18,705,518 - 18,824,490
singlet/doubletdoublet
Overlap geneOstf1, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6
Upstream genePcsk5, Eef1a1-ps1, LOC383440, LOC666712
Downstream geneRorb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217M07.bB6Ng01-217M07.g
ACCGA034079GA034080
length1,081891
definitionB6Ng01-217M07.b B6Ng01-217M07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,705,518 - 18,706,598)(18,823,600 - 18,824,490)
sequence
gaattcatcaaacattcatctcccatttttttacgatccctgtcaattcc
ctatccaaatgaaaattcccacgagtttatttagtctcgtttctccatat
cacagaaaacactctaagaacaacgtttttaaaagtgaaccaggaagggc
ggtcaagaaaactgctttgaggaacttcgtactctctccagtttagttcg
cgagagtcaccctaagcaaaaacactaggatgcatgacagagcgacactg
cctaaagctaggagccgagagggttgcagcccggctgtcccgctggcagc
gcccgagcagctctccaaagctcccgggagacctcgggtccctggcccgc
tccagcccgggcgcaaaccccacccagccgcagcgcacttcccgttcgcc
tgccggtcaagaactccaacttgacagcgacagggcgaaatatgaggaag
tggccgcgaccgaggtgctgccaccacaccgctagaacgtcctggcgagc
cgtgtggacagagtccgaggacgctcctcgggaactcgagcaccgggtcc
cgcagcctggagacccgcacgcgcagcgcacaccactcttacctggtttg
accggtttgggaggtggcttggacatggcgctacacggagcgaccaggct
cagccgcgggagccccacacgcacacgagaactgggcgccaagcctgcgc
tggccgcggccgctccggatccgcgcgcaacccgatgcgggacactcgga
ccagcgagctccgcagacagcccggccttcccaccaggaagtggccgcgc
ctcgccggctgctgattggctgcggcggggagcccggccgacctcagagg
tccagcctgctccggcacgccggagccccgcctttctcttggggggagga
gctttacagtagccacgccctcagccctgcgtaggggaggctatgaaagc
gcagtggactcgctgcctagtgagccaccgggcagtggtaggcatgaacg
ctctttgaagctggctctgcgaacctgctgggaaggattcgaacccgcct
cgggtgagatacccactgcctgctgcgtaca

gaattcctcctcgtccgggacacctcccaggactcgattcctcctggact
cggactccggagtccgggactcacacgcgcgccctgccgcctcgaccctg
ggttcggtttccgctcggccctgacccagctccaggccggtcccaactcc
cggaagaaagactgcgggtcctgcccttcggaagggtccacgcggttgcc
aaaacctcagctacgataatcatgttcgggtggagactagaggacttgaa
agctagcatttcgcaaatcctacctattcgagatcgcagttagatacgcg
tgcgcctggctccacccactgccacctggggccctgggcctgacccctgt
tcataggagagcactcagctgcaggtccggctttcatcctagatttttcc
aggccagcaaccaaaacaatgtctgagcttttgactgtggaatcaatctg
ggctccacctgcacatggacgctgtcttttacagccctgaggagttttca
caatgcctgttgggctctgttaacgcctctgtaggaaagacatgactcca
aagaagtttggctgctgatcaggtatggtcactgtcatcagacaaatttt
agattcttgggtcagagctttaggtgaggagacggtcggtttacgttctc
tgtgtttctgaaatgcccatgagttgctgagcatgacgagagactcttcc
gggcctcagtttacttacctatacagagagaataataaagaaaacccacc
tttctcacagagactacactgaacaaacacagtgaccttgctttatttat
gaagtgtcatacggggctggtgagatggctcagtgggtagagcacccgac
tgctcctcctctgaaggttctggagttcaattcccagcacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_18705518_18706598
seq2: B6Ng01-217M07.b_46_1126

seq1  GAATTCATCAAACATTCATCTCCCATTTTTTTACGATCCCTGTCAATTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAAACATTCATCTCCCATTTTTTTACGATCCCTGTCAATTCC  50

seq1  CTATCCAAATGAAAATTCCCACGAGTTTATTTAGTCTCGTTTCTCCATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCAAATGAAAATTCCCACGAGTTTATTTAGTCTCGTTTCTCCATAT  100

seq1  CACAGAAAACACTCTAAGAACAACGTTTTTAAAAGTGAACCAGGAAGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAAACACTCTAAGAACAACGTTTTTAAAAGTGAACCAGGAAGGGC  150

seq1  GGTCAAGAAAACTGCTTTGAGGAACTTCGTACTCTCTCCAGTTTAGTTCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAGAAAACTGCTTTGAGGAACTTCGTACTCTCTCCAGTTTAGTTCG  200

seq1  CGAGAGTCACCCTAAGCAAAAACACTAGGATGCATGACAGAGCGACACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAGTCACCCTAAGCAAAAACACTAGGATGCATGACAGAGCGACACTG  250

seq1  CCTAAAGCTAGGAGCCGAGAGGGTTGCAGCCCGGCTGTCCCGCTGGCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGCTAGGAGCCGAGAGGGTTGCAGCCCGGCTGTCCCGCTGGCAGC  300

seq1  GCCCGAGCAGCTCTCCAAAGCTCCCGGGAGACCTCGGGTCCCTGGCCCGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGAGCAGCTCTCCAAAGCTCCCGGGAGACCTCGGGTCCCTGGCCCGC  350

seq1  TCCAGCCCGGGCGCAAACCCCACCCAGCCGCAGCGCACTTCCCGTTCGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCCGGGCGCAAACCCCACCCAGCCGCAGCGCACTTCCCGTTCGCC  400

seq1  TGCCGGTCAAGAACTCCAACTTGACAGCGACAGGGCGAAATATGAGGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGGTCAAGAACTCCAACTTGACAGCGACAGGGCGAAATATGAGGAAG  450

seq1  TGGCCGCGACCGAGGTGCTGCCACCACACCGCTAGAACGTCCTGGCGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCGCGACCGAGGTGCTGCCACCACACCGCTAGAACGTCCTGGCGAGC  500

seq1  CGTGTGGACAGAGTCCGAGGACGCTCCTCGGGAACTCGAGCACCGGGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGGACAGAGTCCGAGGACGCTCCTCGGGAACTCGAGCACCGGGTCC  550

seq1  CGCAGCCTGGAGACCCGCACGCGCAGCGCACACCACTCTTACCTGGTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGCCTGGAGACCCGCACGCGCAGCGCACACCACTCTTACCTGGTTTG  600

seq1  ACCGGTTTGGGAGGTGGCTTGGACATGGCGCTACACGGAGCGACCAGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGTTTGGGAGGTGGCTTGGACATGGCGCTACACGGAGCGACCAGGCT  650

seq1  CAGCCGCGGGAGCCCCACACGCACACGAGAACTGGGCGCCAAGCCTGCGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCGCGGGAGCCCCACACGCACACGAGAACTGGGCGCCAAGCCTGCGC  700

seq1  TGGCCGCGGCCGCTCCGGATCCGCGCGCAACCCGATGCGGGACACTCGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCGCGGCCGCTCCGGATCCGCGCGCAACCCGATGCGGGACACTCGGA  750

seq1  CCAGCGAGCTCCGCAGACAGCCCGGCCTTCCCACCAGGAAGTGGCCGCGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCGAGCTCCGCAGACAGCCCGGCCTTCCCACCAGGAAGTGGCCGCGC  800

seq1  CTCGCCGGCTGCTGATTGGCTGCGGCGGGGAGCCCGGCCGAACCTCAGAG  850
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTCGCCGGCTGCTGATTGGCTGCGGCGGGGAGCCCGGCCG-ACCTCAGAG  849

seq1  GTCCAGCCTGCTCCGGCACGCCGGAGCCCCGCCTTTCTCTT-GGGGGAGG  899
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTCCAGCCTGCTCCGGCACGCCGGAGCCCCGCCTTTCTCTTGGGGGGAGG  899

seq1  AGCTTTACAGTAGCCACGCCCTCAGGCCCTGCGTAGGGGAGGCTATGAAA  949
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGCTTTACAGTAGCCACGCCCTCA-GCCCTGCGTAGGGGAGGCTATGAAA  948

seq1  GCGCAGTGGACTTCGCTGCCTAGGTGAG-CACCGGGCAGTGGTAGGCATG  998
      ||||||||||| |||||||||| ||||| |||||||||||||||||||||
seq2  GCGCAGTGGAC-TCGCTGCCTA-GTGAGCCACCGGGCAGTGGTAGGCATG  996

seq1  AAACGCTC-TTGAAGCTTGCTCTGCGACCCTGCTGGGAAGGATTCGAACC  1047
       ||||||| |||||||| ||||||||| ||||||||||||||||||||||
seq2  -AACGCTCTTTGAAGCTGGCTCTGCGAACCTGCTGGGAAGGATTCGAACC  1045

seq1  CGCTTC-GGTGAG-TACCCACTGCCTGCTGCGTACA  1081
      ||| || |||||| ||||||||||||||||||||||
seq2  CGCCTCGGGTGAGATACCCACTGCCTGCTGCGTACA  1081


seq1: chr19_18823600_18824490
seq2: B6Ng01-217M07.g_68_958 (reverse)

seq1  GTTGCTGGGATTTGAACTCC-GGACCTTCAGAGGAGGAGCAGTCGGGTGC  49
      | |||||||| ||||||||| | |||||||||||||||||||||||||||
seq2  GGTGCTGGGAATTGAACTCCAGAACCTTCAGAGGAGGAGCAGTCGGGTGC  50

seq1  TCTTACCCACTGAGCCATCTCACCAGCCCCGTATGACACTTCATAAATAA  99
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TC-TACCCACTGAGCCATCTCACCAGCCCCGTATGACACTTCATAAATAA  99

seq1  AGCAAGGTCACTGTGTTTGTTCAGTGTAGTCTCTGTGAGAAAGGTGGGTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGTCACTGTGTTTGTTCAGTGTAGTCTCTGTGAGAAAGGTGGGTT  149

seq1  TTCTTTATTATTCTCTCTGTATAGGTAAGTAAACTGAGGCCCGGAAGAGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATTATTCTCTCTGTATAGGTAAGTAAACTGAGGCCCGGAAGAGT  199

seq1  CTCTCGTCATGCTCAGCAACTCATGGGCATTTCAGAAACACAGAGAACGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCGTCATGCTCAGCAACTCATGGGCATTTCAGAAACACAGAGAACGT  249

seq1  AAACCGACCGTCTCCTCACCTAAAGCTCTGACCCAAGAATCTAAAATTTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCGACCGTCTCCTCACCTAAAGCTCTGACCCAAGAATCTAAAATTTG  299

seq1  TCTGATGACAGTGACCATACCTGATCAGCAGCCAAACTTCTTTGGAGTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGACAGTGACCATACCTGATCAGCAGCCAAACTTCTTTGGAGTCA  349

seq1  TGTCTTTCCTACAGAGGCGTTAACAGAGCCCAACAGGCATTGTGAAAACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTCCTACAGAGGCGTTAACAGAGCCCAACAGGCATTGTGAAAACT  399

seq1  CCTCAGGGCTGTAAAAGACAGCGTCCATGTGCAGGTGGAGCCCAGATTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGGCTGTAAAAGACAGCGTCCATGTGCAGGTGGAGCCCAGATTGA  449

seq1  TTCCACAGTCAAAAGCTCAGACATTGTTTTGGTTGCTGGCCTGGAAAAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAGTCAAAAGCTCAGACATTGTTTTGGTTGCTGGCCTGGAAAAAT  499

seq1  CTAGGATGAAAGCCGGACCTGCAGCTGAGTGCTCTCCTATGAACAGGGGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGATGAAAGCCGGACCTGCAGCTGAGTGCTCTCCTATGAACAGGGGT  549

seq1  CAGGCCCAGGGCCCCAGGTGGCAGTGGGTGGAGCCAGGCGCACGCGTATC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCCAGGGCCCCAGGTGGCAGTGGGTGGAGCCAGGCGCACGCGTATC  599

seq1  TAACTGCGATCTCGAATAGGTAGGATTTGCGAAATGCTAGCTTTCAAGTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGCGATCTCGAATAGGTAGGATTTGCGAAATGCTAGCTTTCAAGTC  649

seq1  CTCTAGTCTCCACCCGAACATGATTATCGTAGCTGAGGTTTTGGCAACCG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGTCTCCACCCGAACATGATTATCGTAGCTGAGGTTTTGGCAACCG  699

seq1  CGTGGACCCTTCCGAAGGGCAGGACCCGCAGTCTTTCTTCCGGGAGTTGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGACCCTTCCGAAGGGCAGGACCCGCAGTCTTTCTTCCGGGAGTTGG  749

seq1  GACCGGCCTGGAGCTGGGTCAGGGCCGAGCGGAAACCGAACCCAGGGTCG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGGCCTGGAGCTGGGTCAGGGCCGAGCGGAAACCGAACCCAGGGTCG  799

seq1  AGGCGGCAGGGCGCGCGTGTGAGTCCCGGACTCCGGAGTCCGAGTCCAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGGCAGGGCGCGCGTGTGAGTCCCGGACTCCGGAGTCCGAGTCCAGG  849

seq1  AGGAATCGAGTCCTGGGAGGTGTCCCGGACGAGGAGGAATTC  891
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCGAGTCCTGGGAGGTGTCCCGGACGAGGAGGAATTC  891


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