BAC Information

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BAC

Clone NameB6Ng01-217P21
Chromosome19 (Build37)
Map Location 47,528,784 - 47,715,775
singlet/doubletdoublet
Overlap geneSh3pxd2a, Obfc1, Slk
Upstream geneSufu, Trim8, Arl3, Sfxn2, D19Wsu162e, Cyp17a1, EG629359, 2010012O05Rik, As3mt, Cnnm2, Nt5c2, Ina, Pcgf6, LOC100042842, Taf5, Usmg5, Pdcd11, 2810048G17Rik, EG546729, EG240669, EG629389, Neurl, EG329070
Downstream geneCol17a1, 6330577E15Rik, D19Ertd652e, LOC677174, Gsto1, Gsto2, BC063749, Gm969, LOC670576, Sorcs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217P21.bB6Ng01-217P21.g
ACCGA034239GA034240
length1,0251,000
definitionB6Ng01-217P21.b B6Ng01-217P21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,714,758 - 47,715,775)(47,528,784 - 47,529,773)
sequence
gaattccagacatggacttctgaagccttcatcttctaatattttgttat
agtgaactgaatggatggtatcagggactggaataattcatttaaagaaa
agtgctcttattcaggttgagacaaagcacaagaaggttcccctgaagag
gcagagcatgagcgtggccatgaagcaatggttaactcacaggcaggaca
gagaatggatgccagacaagacaagccagaacagtgacgctggcacagaa
gttgtaggaagaacacagtctatgcacactgcagcacactaagtgagaaa
gcttacagcgcactgtgtcactatgaacacttcaaagtcacaccgatgga
actcacgatttatcaacatctcttcagatgttcaggataaatactctggt
gacagcaggcaaatgagaataaggagaggaactaaagacagaacccatga
ggacatggtgagcaagtgcagcaacagaagagagagtggaaaggagtcac
agttaacaccttgctgaatgctaagtgctgcagatttctaacctgtgtga
gccaggatgtcacttaggagaaaggctgtggaaagcacatttcctgttgg
taaggtcacaggagggagggaaggggagatgaccactgaactcaatctga
tgacgactgagttgacattcttctatcagcttcaacaggggtacattaat
cacttagactgtgccaagaactctaatagcaagtgtcagatcagtgaaca
gagataagctccctgtttcaaaggggcttatagtctcatagaattacaac
agaagagaaacagaactgctgtcaaagaatgggaaagaatataactacag
aaaaccaaataaataagccaggactcagaaagcctgaggtgggaatcaga
gatatgacctcactgttgggtattagacagggaagacagggcacccagaa
agacaatgaattaagtgagagtgcaagttcacacctggtaacaaaaacca
gtgggcctggggtgccattgggcac
gaattcaggagagagctcccctctcggagcctcacgccaggcctgtgcca
ggcggctaggcctcctctctgctgtcactcagagaaattctcccacacag
gcgagtcccttaaaatagctttttgggttccagccaccaggaaacagact
aaagctggatcagaactggacctaccctgaaaggtttacaaaggagttac
ttcaaaggacagggacagcccctattcactcagaacccctaggtaggcaa
agccatgaggcagggtttccaacaaggggcaggctccttaggacagcaca
ttgggcttcaaagtccccatgacccctggggcagccctgaagagagtcca
agtgtgtgaagtaaggtgacagagaccaggcacaggccaggggaagggac
aaatatgcccgaatatgtcctttactgacaatgagactgctactctctaa
actgcagccgtagtccaatggcattagaaaggcaactctgattataaatc
agaggtctggaggtgcctggcacagactaaatggcagcagtgaatggcgg
tgacgtaatacaggccgaattctccatcaactaagtagattacttaagag
tggaggatgctctaccaggcgctgtataataaaaaggacagaggttcaac
ccagtgcacagcccctcagttccttaccccacctaggaggtacactcatt
atcaccaccccttcctccctggagttatggtcggattgataagagcgatc
actttccgccacatctgaaggtcacccacactttagggatcccagcgctg
gttcagaggccctctctgacttagtgcacacagaggaaagggactctgcc
ccatcccgtgtgttacctccgcccaggcctggggagggtggttttcctta
ctggaacaaagggaagtgacagggaatggggccaaagaagcccagaagga
ggagcataaagtctgcagctgtttcctctctgtctaactcatccaccttg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_47714758_47715775
seq2: B6Ng01-217P21.b_46_1070 (reverse)

seq1  GTGCCCACT-GCACCC--AGCCCACTGGTTTTTGTTACCA-GTGTGAACT  46
      ||||||| | ||||||   ||||||||||||||||||||| |||||||| 
seq2  GTGCCCAATGGCACCCCAGGCCCACTGGTTTTTGTTACCAGGTGTGAAC-  49

seq1  TTGCCCTCTCACTTAATTCATTGTC-TTCTGGGTGCCCTGTCTTCCCTGT  95
      |||| |||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTGCACTCTCACTTAATTCATTGTCTTTCTGGGTGCCCTGTCTTCCCTGT  99

seq1  CTAATTCCC-ACTGTGAGGTCCTTATCTCTGATTCCCACCTCA-GCTTTC  143
      ||||| ||| || ||||||| | |||||||||||||||||||| ||||||
seq2  CTAATACCCAACAGTGAGGT-CATATCTCTGATTCCCACCTCAGGCTTTC  148

seq1  TGTGTCCTGGCTTATTTATTTGGTTTTCTGT-GTTATATTCTTTCCCATT  192
      || |||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGAGTCCTGGCTTATTTATTTGGTTTTCTGTAGTTATATTCTTTCCCATT  198

seq1  CTTTGACAGCAGTTCTGTTTCTCTTCTGTTGT-ATTCTATGAGACTATAA  241
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTTTGACAGCAGTTCTGTTTCTCTTCTGTTGTAATTCTATGAGACTATAA  248

seq1  GCCCCTTTGAAACAGGGAGCTTATCTCTGTTCACTGATCTGACACTTGCT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTTTGAAACAGGGAGCTTATCTCTGTTCACTGATCTGACACTTGCT  298

seq1  ATTAGAGTTCTTGGCACAGTCTAAGTGATTAATGTACCCCTGTTGAAGCT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAGTTCTTGGCACAGTCTAAGTGATTAATGTACCCCTGTTGAAGCT  348

seq1  GATAGAAGAATGTCAACTCAGTCGTCATCAGATTGAGTTCAGTGGTCATC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAAGAATGTCAACTCAGTCGTCATCAGATTGAGTTCAGTGGTCATC  398

seq1  TCCCCTTCCCTCCCTCCTGTGACCTTACCAACAGGAAATGTGCTTTCCAC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTCCCTCCCTCCTGTGACCTTACCAACAGGAAATGTGCTTTCCAC  448

seq1  AGCCTTTCTCCTAAGTGACATCCTGGCTCACACAGGTTAGAAATCTGCAG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTCTCCTAAGTGACATCCTGGCTCACACAGGTTAGAAATCTGCAG  498

seq1  CACTTAGCATTCAGCAAGGTGTTAACTGTGACTCCTTTCCACTCTCTCTT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGCATTCAGCAAGGTGTTAACTGTGACTCCTTTCCACTCTCTCTT  548

seq1  CTGTTGCTGCACTTGCTCACCATGTCCTCATGGGTTCTGTCTTTAGTTCC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGCTGCACTTGCTCACCATGTCCTCATGGGTTCTGTCTTTAGTTCC  598

seq1  TCTCCTTATTCTCATTTGCCTGCTGTCACCAGAGTATTTATCCTGAACAT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTATTCTCATTTGCCTGCTGTCACCAGAGTATTTATCCTGAACAT  648

seq1  CTGAAGAGATGTTGATAAATCGTGAGTTCCATCGGTGTGACTTTGAAGTG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAGATGTTGATAAATCGTGAGTTCCATCGGTGTGACTTTGAAGTG  698

seq1  TTCATAGTGACACAGTGCGCTGTAAGCTTTCTCACTTAGTGTGCTGCAGT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGTGACACAGTGCGCTGTAAGCTTTCTCACTTAGTGTGCTGCAGT  748

seq1  GTGCATAGACTGTGTTCTTCCTACAACTTCTGTGCCAGCGTCACTGTTCT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATAGACTGTGTTCTTCCTACAACTTCTGTGCCAGCGTCACTGTTCT  798

seq1  GGCTTGTCTTGTCTGGCATCCATTCTCTGTCCTGCCTGTGAGTTAACCAT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTCTTGTCTGGCATCCATTCTCTGTCCTGCCTGTGAGTTAACCAT  848

seq1  TGCTTCATGGCCACGCTCATGCTCTGCCTCTTCAGGGGAACCTTCTTGTG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCATGGCCACGCTCATGCTCTGCCTCTTCAGGGGAACCTTCTTGTG  898

seq1  CTTTGTCTCAACCTGAATAAGAGCACTTTTCTTTAAATGAATTATTCCAG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCTCAACCTGAATAAGAGCACTTTTCTTTAAATGAATTATTCCAG  948

seq1  TCCCTGATACCATCCATTCAGTTCACTATAACAAAATATTAGAAGATGAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGATACCATCCATTCAGTTCACTATAACAAAATATTAGAAGATGAA  998

seq1  GGCTTCAGAAGTCCATGTCTGGAATTC  1018
      |||||||||||||||||||||||||||
seq2  GGCTTCAGAAGTCCATGTCTGGAATTC  1025

seq1: chr19_47528784_47529773
seq2: B6Ng01-217P21.g_66_1065

seq1  GAATTCAGGAGAGAGCTCCCCTCTCGGAGCCTCACGCCAGGCCTGTGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAGAGAGCTCCCCTCTCGGAGCCTCACGCCAGGCCTGTGCCA  50

seq1  GGCGGCTAGGCCTCCTCTCTGCTGTCACTCAGAGAAATTCTCCCACACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGCTAGGCCTCCTCTCTGCTGTCACTCAGAGAAATTCTCCCACACAG  100

seq1  GCGAGTCCCTTAAAATAGCTTTTTGGGTTCCAGCCACCAGGAAACAGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGTCCCTTAAAATAGCTTTTTGGGTTCCAGCCACCAGGAAACAGACT  150

seq1  AAAGCTGGATCAGAACTGGACCTACCCTGAAAGGTTTACAAAGGAGTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGGATCAGAACTGGACCTACCCTGAAAGGTTTACAAAGGAGTTAC  200

seq1  TTCAAAGGACAGGGACAGCCCCTATTCACTCAGAACCCCTAGGTAGGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGGACAGGGACAGCCCCTATTCACTCAGAACCCCTAGGTAGGCAA  250

seq1  AGCCATGAGGCAGGGTTTCCAACAAGGGGCAGGCTCCTTAGGACAGCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGAGGCAGGGTTTCCAACAAGGGGCAGGCTCCTTAGGACAGCACA  300

seq1  TTGGGCTTCAAAGTCCCCATGACCCCTGGGGCAGCCCTGAAGAGAGTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCTTCAAAGTCCCCATGACCCCTGGGGCAGCCCTGAAGAGAGTCCA  350

seq1  AGTGTGTGAAGTAAGGTGACAGAGACCAGGCACAGGCCAGGGGAAGGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTGAAGTAAGGTGACAGAGACCAGGCACAGGCCAGGGGAAGGGAC  400

seq1  AAATATGCCCGAATATGTCCTTTACTGACAATGAGACTGCTACTCTCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGCCCGAATATGTCCTTTACTGACAATGAGACTGCTACTCTCTAA  450

seq1  ACTGCAGCCGTAGTCCAATGGCATTAGAAAGGCAACTCTGATTATAAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGCCGTAGTCCAATGGCATTAGAAAGGCAACTCTGATTATAAATC  500

seq1  AGAGGTCTGGAGGTGCCTGGCACAGACTAAATGGCAGCAGTGAATGGCGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTCTGGAGGTGCCTGGCACAGACTAAATGGCAGCAGTGAATGGCGG  550

seq1  TGACGTAATACAGGCCGAATTCTCCATCAACTAAGTAGATTACTTAAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGTAATACAGGCCGAATTCTCCATCAACTAAGTAGATTACTTAAGAG  600

seq1  TGGAGGATGCTCTACCAGGCGCTGTATAAT-AAAAGGACAGAGGTTCAAC  649
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGGAGGATGCTCTACCAGGCGCTGTATAATAAAAAGGACAGAGGTTCAAC  650

seq1  CCAGTGCACAGCCCCTCAGTTCCTTACCCCACCTAGGAGGTACACTCATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCACAGCCCCTCAGTTCCTTACCCCACCTAGGAGGTACACTCATT  700

seq1  ATCACCACCCCTTCCTCCCTGGAGTTATGGTCGGATTGATAAGAGCGATC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCACCCCTTCCTCCCTGGAGTTATGGTCGGATTGATAAGAGCGATC  750

seq1  ACTTTCCGCCACATCTGAAGGTCACCCACACTTTAGGGATCCCAGCGCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCGCCACATCTGAAGGTCACCCACACTTTAGGGATCCCAGCGCTG  800

seq1  GTTCAGAGGCCCTCTCTGACTTAGTGCACACAGAGGAAA-GGACTCTGCC  848
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTTCAGAGGCCCTCTCTGACTTAGTGCACACAGAGGAAAGGGACTCTGCC  850

seq1  CCATCCCGTGTG-TACCTCCGCCCAGGCCTGGGGAGGGTGG-TTTCCTTA  896
      |||||||||||| |||||||||||||||||||||||||||| ||||||||
seq2  CCATCCCGTGTGTTACCTCCGCCCAGGCCTGGGGAGGGTGGTTTTCCTTA  900

seq1  CTGG-ACAAAGGGAAGTGACAGGGAA-GGGGCCAAAGAAAGCCCAG-AGG  943
      |||| ||||||||||||||||||||| |||||||||| |||||||| |||
seq2  CTGGAACAAAGGGAAGTGACAGGGAATGGGGCCAAAG-AAGCCCAGAAGG  949

seq1  AGGAGCAGAA---GCGCAGCTGTTTCCTCTCTG-CTAACTCAGCCACCTG  989
      ||||||| ||     |||||||||||||||||| |||||||| |||||| 
seq2  AGGAGCATAAAGTCTGCAGCTGTTTCCTCTCTGTCTAACTCATCCACCTT  999

seq1  G  990
      |
seq2  G  1000